Wall clock time and date at job start Tue Mar 31 2020 06:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45203 * 109.47073 * 2 1 4 4 C 1.34814 * 116.99980 * 180.02562 * 3 2 1 5 5 O 1.21534 * 120.00079 * 0.02562 * 4 3 2 6 6 C 1.47105 * 119.99669 * 179.97438 * 4 3 2 7 7 C 1.34043 * 124.70941 * 179.97438 * 6 4 3 8 8 C 1.39955 * 115.51457 * 180.02562 * 7 6 4 9 9 N 1.35417 * 129.58755 * 179.97438 * 8 7 6 10 10 C 1.30831 * 121.19035 * 180.02562 * 9 8 7 11 11 N 1.32154 * 122.66742 * 359.73535 * 10 9 8 12 12 C 1.32674 * 120.80834 * 0.53741 * 11 10 9 13 13 N 1.38283 * 120.58576 * 179.76649 * 12 11 10 14 14 C 1.36804 * 119.99665 * 359.43534 * 13 12 11 15 15 H 1.08001 * 120.00376 * 0.27923 * 14 13 12 16 16 C 1.38914 * 119.99971 * 180.27897 * 14 13 12 17 17 N 1.31494 * 119.99763 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00085 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46983 * 89.99999 * 18 16 14 20 20 H 1.48499 * 109.47218 * 210.00068 * 18 16 14 21 21 H 1.48505 * 109.47256 * 330.00074 * 18 16 14 22 22 C 1.39854 * 112.67361 * 0.02562 * 8 7 6 23 23 S 1.75569 * 124.71343 * 0.02562 * 6 4 3 24 24 H 1.09000 * 109.47245 * 299.99449 * 1 2 3 25 25 H 1.09000 * 109.47757 * 59.99828 * 1 2 3 26 26 H 1.09000 * 109.47021 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46754 * 240.00364 * 2 1 3 28 28 H 1.09000 * 109.47757 * 120.00172 * 2 1 3 29 29 H 1.07997 * 122.23943 * 359.97438 * 7 6 4 30 30 H 1.08002 * 118.66381 * 180.02562 * 10 9 8 31 31 H 0.97001 * 120.00417 * 179.72142 * 13 12 11 32 32 H 0.96999 * 119.99816 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3505 1.5456 -0.0005 5 8 4.0908 0.5818 -0.0015 6 6 3.9126 2.9050 -0.0011 7 6 5.2226 3.1892 -0.0012 8 6 5.5439 4.5514 -0.0013 9 7 6.7578 5.1517 -0.0009 10 6 6.8690 6.4553 -0.0005 11 7 5.8211 7.2606 -0.0056 12 6 4.5880 6.7712 -0.0008 13 7 3.4948 7.6181 -0.0013 14 6 3.6798 8.9736 0.0048 15 1 4.6795 9.3822 0.0055 16 6 2.5817 9.8244 0.0101 17 7 1.3645 9.3268 0.0098 18 14 2.8342 11.6752 0.0177 19 1 2.8990 12.1716 -1.3803 20 1 1.7008 12.3265 0.7223 21 1 4.1035 11.9988 0.7173 22 6 4.4117 5.3724 -0.0007 23 16 2.9611 4.3805 -0.0006 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.9793 2.4187 -0.0004 30 1 7.8572 6.8909 -0.0006 31 1 2.5969 7.2511 -0.0018 32 1 0.5977 9.9209 0.0131 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534816.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:33 Heat of formation + Delta-G solvation = -18.871163 kcal Electronic energy + Delta-G solvation = -19901.918136 eV Core-core repulsion = 16568.178720 eV Total energy + Delta-G solvation = -3333.739416 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.40662 -39.86438 -36.93322 -36.27590 -35.09490 -32.68464 -31.95868 -30.68415 -29.48343 -26.06144 -24.76329 -23.85763 -22.86578 -21.41387 -20.25024 -18.88866 -18.12984 -17.00277 -16.88637 -16.64265 -16.25424 -15.38985 -14.90407 -14.51609 -14.38007 -14.08553 -13.96888 -13.53450 -13.32736 -12.95896 -12.51148 -12.28426 -11.99807 -11.89931 -11.80147 -11.45446 -11.07196 -11.03249 -10.84301 -10.66900 -10.60205 -10.59070 -9.67468 -9.55670 -8.76471 -8.46265 -8.16061 -7.22698 -7.00297 -4.15314 0.46952 1.71464 1.94775 2.25941 2.31813 2.50236 2.95558 3.01130 3.06118 3.12582 3.75616 4.42640 4.50933 4.56746 4.75210 4.80119 4.98064 5.00651 5.08206 5.23690 5.45625 5.58021 5.58842 5.76861 5.80749 5.94720 6.18266 6.32662 6.41090 7.01901 7.12713 7.48249 7.65946 7.96584 8.33708 8.77305 8.89832 9.45420 10.13164 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.019199 B = 0.004300 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.025964 B = 6509.590336 C = 7947.159374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.064 3.936 3 O -0.351 6.351 4 C 0.546 3.454 5 O -0.501 6.501 6 C -0.219 4.219 7 C -0.030 4.030 8 C 0.170 3.830 9 N -0.600 5.600 10 C 0.351 3.649 11 N -0.591 5.591 12 C 0.388 3.612 13 N -0.484 5.484 14 C -0.281 4.281 15 H 0.126 0.874 16 C 0.025 3.975 17 N -0.868 5.868 18 Si 0.946 3.054 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.261 1.261 22 C -0.289 4.289 23 S 0.175 5.825 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.156 0.844 30 H 0.180 0.820 31 H 0.408 0.592 32 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.489 -10.377 0.015 10.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.268 6.268 4 C 0.390 3.610 5 O -0.390 6.390 6 C -0.339 4.339 7 C -0.067 4.067 8 C 0.037 3.963 9 N -0.330 5.330 10 C 0.057 3.943 11 N -0.326 5.326 12 C 0.132 3.868 13 N -0.088 5.088 14 C -0.414 4.414 15 H 0.143 0.857 16 C -0.183 4.183 17 N -0.503 5.503 18 Si 0.771 3.229 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.185 1.185 22 C -0.418 4.418 23 S 0.439 5.561 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.173 0.827 30 H 0.197 0.803 31 H 0.245 0.755 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.380 -9.713 0.013 10.285 hybrid contribution 0.287 -0.081 -0.005 0.299 sum -3.093 -9.795 0.008 10.272 Atomic orbital electron populations 1.21816 0.92428 1.02926 1.03873 1.23061 0.95460 0.79728 1.02739 1.86599 1.23250 1.32603 1.84350 1.19758 0.80679 0.87922 0.72661 1.90848 1.60438 1.41444 1.46307 1.22551 0.97581 0.95223 1.18509 1.19685 0.94430 0.95258 0.97357 1.18400 0.89002 0.91667 0.97244 1.68365 1.22821 1.12748 1.29081 1.24074 0.96870 0.85036 0.88322 1.68039 0.96778 1.38333 1.29437 1.17461 0.88354 0.83304 0.97647 1.41073 1.04920 1.06111 1.56724 1.20262 0.96241 0.79639 1.45214 0.85670 1.25670 0.94305 1.02586 0.95752 1.69639 0.98512 1.38011 1.44128 0.85577 0.78818 0.79445 0.79054 1.19639 1.20327 1.18547 1.23941 0.98820 0.98670 1.20334 1.83939 1.05111 0.92613 1.74434 0.91278 0.91272 0.90189 0.91047 0.91046 0.82679 0.80325 0.75511 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 37.16 0.38 -0.80 16 2 C 0.06 0.66 6.20 37.16 0.23 0.90 16 3 O -0.35 -4.93 10.04 -40.80 -0.41 -5.34 16 4 C 0.55 8.77 7.94 34.33 0.27 9.04 16 5 O -0.50 -8.66 16.53 -19.29 -0.32 -8.98 16 6 C -0.22 -3.76 6.34 -37.46 -0.24 -3.99 16 7 C -0.03 -0.54 9.83 -40.41 -0.40 -0.93 16 8 C 0.17 3.49 7.00 -85.04 -0.60 2.89 16 9 N -0.60 -12.40 10.50 -12.99 -0.14 -12.54 16 10 C 0.35 7.03 12.23 -92.66 -1.13 5.90 16 11 N -0.59 -13.38 9.24 -13.72 -0.13 -13.50 16 12 C 0.39 8.92 7.50 -154.78 -1.16 7.76 16 13 N -0.48 -11.52 5.40 -10.81 -0.06 -11.57 16 14 C -0.28 -6.87 9.71 -15.08 -0.15 -7.02 16 15 H 0.13 3.09 7.11 -52.49 -0.37 2.71 16 16 C 0.02 0.58 5.50 -17.45 -0.10 0.49 16 17 N -0.87 -21.07 13.05 55.50 0.72 -20.34 16 18 Si 0.95 18.37 29.55 -169.99 -5.02 13.35 16 19 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 20 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 21 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 22 C -0.29 -6.08 6.48 -37.94 -0.25 -6.32 16 23 S 0.18 3.11 22.68 -107.50 -2.44 0.67 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.16 2.56 7.97 -52.49 -0.42 2.15 16 30 H 0.18 2.84 8.06 -52.49 -0.42 2.42 16 31 H 0.41 9.56 7.55 -40.82 -0.31 9.25 16 32 H 0.29 6.45 8.31 -40.82 -0.34 6.11 16 LS Contribution 307.03 15.07 4.63 4.63 Total: -1.00 -27.60 307.03 -9.06 -36.66 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -2.77 Total: 9.08 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -3.13 Total: 7.90 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.40 Total: -57.96 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.73 Total: -14.32 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.02 Total: 13.35 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -2.44 Total: 0.67 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.60 -9.06 -36.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534816.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.784 kcal (2) G-P(sol) polarization free energy of solvation -27.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds