Wall clock time and date at job start Tue Mar 31 2020 06:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45203 * 109.47073 * 2 1 4 4 C 1.34814 * 116.99980 * 180.02562 * 3 2 1 5 5 O 1.21534 * 120.00079 * 0.02562 * 4 3 2 6 6 C 1.47105 * 119.99669 * 179.97438 * 4 3 2 7 7 C 1.34043 * 124.70941 * 179.97438 * 6 4 3 8 8 C 1.39955 * 115.51457 * 180.02562 * 7 6 4 9 9 N 1.35417 * 129.58755 * 179.97438 * 8 7 6 10 10 C 1.30831 * 121.19035 * 180.02562 * 9 8 7 11 11 N 1.32154 * 122.66742 * 359.73535 * 10 9 8 12 12 C 1.32674 * 120.80834 * 0.53741 * 11 10 9 13 13 N 1.38283 * 120.58576 * 179.76649 * 12 11 10 14 14 C 1.36804 * 119.99665 * 359.43534 * 13 12 11 15 15 H 1.08001 * 120.00376 * 0.27923 * 14 13 12 16 16 C 1.38914 * 119.99971 * 180.27897 * 14 13 12 17 17 N 1.31494 * 119.99763 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00085 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46983 * 89.99999 * 18 16 14 20 20 H 1.48499 * 109.47218 * 210.00068 * 18 16 14 21 21 H 1.48505 * 109.47256 * 330.00074 * 18 16 14 22 22 C 1.39854 * 112.67361 * 0.02562 * 8 7 6 23 23 S 1.75569 * 124.71343 * 0.02562 * 6 4 3 24 24 H 1.09000 * 109.47245 * 299.99449 * 1 2 3 25 25 H 1.09000 * 109.47757 * 59.99828 * 1 2 3 26 26 H 1.09000 * 109.47021 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46754 * 240.00364 * 2 1 3 28 28 H 1.09000 * 109.47757 * 120.00172 * 2 1 3 29 29 H 1.07997 * 122.23943 * 359.97438 * 7 6 4 30 30 H 1.08002 * 118.66381 * 180.02562 * 10 9 8 31 31 H 0.97001 * 120.00417 * 179.72142 * 13 12 11 32 32 H 0.96999 * 119.99816 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3505 1.5456 -0.0005 5 8 4.0908 0.5818 -0.0015 6 6 3.9126 2.9050 -0.0011 7 6 5.2226 3.1892 -0.0012 8 6 5.5439 4.5514 -0.0013 9 7 6.7578 5.1517 -0.0009 10 6 6.8690 6.4553 -0.0005 11 7 5.8211 7.2606 -0.0056 12 6 4.5880 6.7712 -0.0008 13 7 3.4948 7.6181 -0.0013 14 6 3.6798 8.9736 0.0048 15 1 4.6795 9.3822 0.0055 16 6 2.5817 9.8244 0.0101 17 7 1.3645 9.3268 0.0098 18 14 2.8342 11.6752 0.0177 19 1 2.8990 12.1716 -1.3803 20 1 1.7008 12.3265 0.7223 21 1 4.1035 11.9988 0.7173 22 6 4.4117 5.3724 -0.0007 23 16 2.9611 4.3805 -0.0006 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.9793 2.4187 -0.0004 30 1 7.8572 6.8909 -0.0006 31 1 2.5969 7.2511 -0.0018 32 1 0.5977 9.9209 0.0131 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534816.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:32 Heat of formation + Delta-G solvation = -33.064655 kcal Electronic energy + Delta-G solvation = -19902.533612 eV Core-core repulsion = 16568.178720 eV Total energy + Delta-G solvation = -3334.354892 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.74969 -41.39851 -38.32149 -37.75793 -36.65510 -34.40210 -32.86823 -32.25343 -31.05850 -27.61206 -26.33610 -25.36335 -23.93814 -22.80777 -21.71581 -20.43815 -19.67119 -18.54687 -18.24305 -17.83652 -17.73662 -16.88408 -16.47422 -16.03690 -16.01708 -15.49533 -15.20526 -14.89771 -14.72598 -14.03684 -13.78191 -13.62065 -13.55816 -13.14187 -12.91297 -12.66561 -12.61350 -12.59076 -12.42742 -12.10598 -11.92423 -11.58752 -11.31909 -11.23352 -10.35259 -10.09435 -9.86601 -8.80771 -8.72107 -5.98549 -1.00658 0.23799 0.31152 0.74828 0.81039 1.34547 1.43015 1.47353 1.56440 1.65570 2.16403 2.72660 2.80680 3.25404 3.26763 3.59731 3.70739 3.94000 4.01264 4.04661 4.22332 4.33519 4.45687 4.66100 4.82672 4.86405 4.92701 5.04975 5.24674 5.32707 5.43852 5.80245 6.25761 6.42468 6.59392 7.02184 7.16960 7.75805 8.43144 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.019199 B = 0.004300 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.025964 B = 6509.590336 C = 7947.159374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.354 6.354 4 C 0.552 3.448 5 O -0.511 6.511 6 C -0.204 4.204 7 C -0.036 4.036 8 C 0.163 3.837 9 N -0.599 5.599 10 C 0.347 3.653 11 N -0.613 5.613 12 C 0.390 3.610 13 N -0.503 5.503 14 C -0.312 4.312 15 H 0.115 0.885 16 C -0.011 4.011 17 N -0.902 5.902 18 Si 1.008 2.992 19 H -0.268 1.268 20 H -0.273 1.273 21 H -0.261 1.261 22 C -0.322 4.322 23 S 0.208 5.792 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.172 0.828 30 H 0.219 0.781 31 H 0.405 0.595 32 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 -11.725 0.019 11.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.271 6.271 4 C 0.395 3.605 5 O -0.402 6.402 6 C -0.324 4.324 7 C -0.073 4.073 8 C 0.028 3.972 9 N -0.327 5.327 10 C 0.053 3.947 11 N -0.348 5.348 12 C 0.134 3.866 13 N -0.109 5.109 14 C -0.443 4.443 15 H 0.133 0.867 16 C -0.215 4.215 17 N -0.538 5.538 18 Si 0.830 3.170 19 H -0.193 1.193 20 H -0.197 1.197 21 H -0.185 1.185 22 C -0.450 4.450 23 S 0.472 5.528 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.126 0.874 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.189 0.811 30 H 0.235 0.765 31 H 0.241 0.759 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.370 -11.086 0.016 11.587 hybrid contribution 0.376 -0.015 -0.008 0.376 sum -2.994 -11.100 0.009 11.497 Atomic orbital electron populations 1.21862 0.90269 1.04686 1.03725 1.23482 0.97125 0.77881 1.03462 1.86601 1.21749 1.35117 1.83650 1.19520 0.81429 0.87042 0.72477 1.90848 1.60972 1.41539 1.46805 1.22813 0.97472 0.95929 1.16233 1.19761 0.95192 0.94496 0.97809 1.18795 0.88853 0.92658 0.96847 1.68431 1.23113 1.13068 1.28093 1.24853 0.97795 0.84840 0.87162 1.68086 0.97293 1.39531 1.29843 1.17833 0.88545 0.84260 0.95940 1.41035 1.04850 1.06027 1.58974 1.20285 0.96201 0.80309 1.47533 0.86694 1.26433 0.93823 1.06190 0.95052 1.69700 0.99057 1.39213 1.45842 0.84680 0.78676 0.74660 0.79001 1.19307 1.19740 1.18457 1.24080 1.00810 0.98312 1.21821 1.83860 1.03379 0.91818 1.73742 0.91421 0.91415 0.87447 0.90359 0.90354 0.81064 0.76509 0.75869 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.29 71.98 0.74 -1.16 16 2 C 0.05 0.98 6.20 71.98 0.45 1.43 16 3 O -0.35 -9.21 10.04 -57.25 -0.58 -9.78 16 4 C 0.55 16.58 7.94 70.15 0.56 17.14 16 5 O -0.51 -16.54 16.53 19.72 0.33 -16.22 16 6 C -0.20 -6.67 6.34 23.64 0.15 -6.52 16 7 C -0.04 -1.24 9.83 21.73 0.21 -1.02 16 8 C 0.16 6.51 7.00 39.40 0.28 6.79 16 9 N -0.60 -23.94 10.50 -195.01 -2.05 -25.99 16 10 C 0.35 13.50 12.23 181.06 2.21 15.72 16 11 N -0.61 -27.76 9.24 -197.31 -1.82 -29.59 16 12 C 0.39 18.17 7.50 133.68 1.00 19.17 16 13 N -0.50 -24.60 5.40 -188.11 -1.02 -25.62 16 14 C -0.31 -15.71 9.71 84.08 0.82 -14.89 16 15 H 0.12 5.85 7.11 -2.91 -0.02 5.83 16 16 C -0.01 -0.53 5.50 84.91 0.47 -0.06 16 17 N -0.90 -44.76 13.05 21.66 0.28 -44.47 16 18 Si 1.01 38.05 29.55 68.60 2.03 40.07 16 19 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 20 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 21 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 22 C -0.32 -13.48 6.48 23.33 0.15 -13.33 16 23 S 0.21 7.21 22.68 -56.49 -1.28 5.93 16 24 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.17 5.29 7.97 -2.91 -0.02 5.27 16 30 H 0.22 6.44 8.06 -2.91 -0.02 6.42 16 31 H 0.41 19.62 7.55 -92.71 -0.70 18.92 16 32 H 0.29 13.25 8.31 -92.71 -0.77 12.48 16 Total: -1.00 -58.98 307.03 3.41 -55.56 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.49 Total: 26.84 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: 7.03 Total: 23.26 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -4.60 Total: -125.67 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.25 Total: -26.00 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.07 kcal Atomic # 16 Polarization: 7.21 SS G_CDS: -1.28 Total: 5.93 kcal Total: -58.98 3.41 -55.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534816.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.499 kcal (2) G-P(sol) polarization free energy of solvation -58.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds