Wall clock time and date at job start Tue Mar 31 2020 06:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86805 * 119.99700 * 2 1 4 4 H 1.48495 * 109.47028 * 270.27100 * 3 2 1 5 5 H 1.48496 * 109.47147 * 30.27840 * 3 2 1 6 6 H 1.48499 * 109.46885 * 150.27437 * 3 2 1 7 7 C 1.38789 * 119.99785 * 180.27406 * 2 1 3 8 8 H 1.08002 * 119.99533 * 179.72438 * 7 2 1 9 9 N 1.36825 * 120.00527 * 359.72653 * 7 2 1 10 10 C 1.38959 * 120.00195 * 180.02562 * 9 7 2 11 11 C 1.38934 * 120.14769 * 353.98141 * 10 9 7 12 12 C 1.38263 * 120.00794 * 179.71990 * 11 10 9 13 13 F 1.35088 * 119.84925 * 180.27634 * 12 11 10 14 14 C 1.38752 * 120.30160 * 0.56574 * 12 11 10 15 15 C 1.37942 * 120.29552 * 359.71083 * 14 12 11 16 16 C 1.39329 * 119.99300 * 0.02562 * 15 14 12 17 17 C 1.48138 * 120.15583 * 180.02562 * 16 15 14 18 18 C 1.39865 * 120.17731 * 6.19137 * 17 16 15 19 19 C 1.38530 * 117.89846 * 180.02562 * 18 17 16 20 20 C 1.38925 * 118.06219 * 0.02562 * 19 18 17 21 21 Cl 1.73602 * 119.97020 * 179.97438 * 20 19 18 22 22 N 1.32029 * 120.06019 * 0.02562 * 20 19 18 23 23 N 1.28350 * 122.29307 * 359.65490 * 22 20 19 24 24 H 0.97005 * 120.00007 * 359.72620 * 1 2 3 25 25 H 0.97006 * 119.99542 * 359.97438 * 9 7 2 26 26 H 1.08003 * 119.99578 * 359.97438 * 11 10 9 27 27 H 1.07999 * 119.85465 * 179.70005 * 14 12 11 28 28 H 1.08005 * 120.00207 * 179.97438 * 15 14 12 29 29 H 1.08003 * 121.04696 * 0.03106 * 18 17 16 30 30 H 1.08003 * 120.96685 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4915 2.0498 -1.4000 5 1 1.4502 2.6510 0.7059 6 1 3.5502 1.4386 0.6942 7 6 2.0098 -1.2020 -0.0057 8 1 3.0898 -1.2019 -0.0102 9 7 1.3257 -2.3869 -0.0058 10 6 2.0205 -3.5903 -0.0110 11 6 3.4037 -3.5969 -0.1421 12 6 4.0927 -4.7956 -0.1412 13 9 5.4380 -4.7980 -0.2633 14 6 3.4080 -5.9965 -0.0213 15 6 2.0343 -6.0049 0.1039 16 6 1.3282 -4.8038 0.1099 17 6 -0.1471 -4.8085 0.2447 18 6 -0.8263 -6.0051 0.4960 19 6 -2.2057 -5.9552 0.6129 20 6 -2.8293 -4.7217 0.4731 21 17 -4.5558 -4.6022 0.6096 22 7 -2.1101 -3.6402 0.2354 23 7 -0.8313 -3.6763 0.1315 24 1 -0.4850 0.8401 0.0040 25 1 0.3557 -2.3869 -0.0014 26 1 3.9411 -2.6653 -0.2408 27 1 3.9530 -6.9289 -0.0263 28 1 1.5061 -6.9424 0.1964 29 1 -0.2921 -6.9385 0.5958 30 1 -2.7797 -6.8494 0.8063 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534888.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:02 Heat of formation + Delta-G solvation = 24.276315 kcal Electronic energy + Delta-G solvation = -20127.813298 eV Core-core repulsion = 16670.440886 eV Total energy + Delta-G solvation = -3457.372412 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.043 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.73220 -42.05633 -39.90697 -37.81107 -36.89977 -34.46898 -34.11464 -33.53462 -30.61008 -29.76931 -26.98274 -25.65013 -25.30451 -22.94649 -22.55203 -19.89123 -18.98746 -18.50484 -18.29334 -17.64125 -16.84770 -16.55184 -16.43523 -16.22376 -16.00219 -15.46197 -14.97386 -14.96175 -14.18742 -13.91984 -13.85800 -13.49634 -13.37906 -13.27147 -12.87858 -12.61637 -12.49804 -12.17298 -11.96975 -11.89827 -11.63328 -11.29446 -10.87457 -10.68943 -10.49708 -9.36717 -8.58226 -8.56514 -5.80704 -0.53715 -0.15814 0.64474 0.71991 0.83782 1.36564 1.45783 1.50919 2.19547 2.39381 2.84441 3.00206 3.29826 3.38523 3.49223 3.67313 3.76799 3.78893 4.13582 4.22574 4.45993 4.57480 4.63055 4.98403 4.98722 5.14110 5.19160 5.34582 5.46944 5.57284 5.71497 5.75668 6.28705 6.72409 7.41126 7.59695 7.78337 8.55356 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.006575 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.420656 B = 4257.285198 C = 6813.474715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C -0.022 4.022 3 Si 1.003 2.997 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.257 1.257 7 C -0.338 4.338 8 H 0.107 0.893 9 N -0.535 5.535 10 C 0.206 3.794 11 C -0.275 4.275 12 C 0.160 3.840 13 F -0.150 7.150 14 C -0.270 4.270 15 C 0.021 3.979 16 C -0.223 4.223 17 C 0.131 3.869 18 C -0.102 4.102 19 C -0.083 4.083 20 C 0.069 3.931 21 Cl -0.011 7.011 22 N -0.258 5.258 23 N -0.296 5.296 24 H 0.280 0.720 25 H 0.422 0.578 26 H 0.114 0.886 27 H 0.157 0.843 28 H 0.175 0.825 29 H 0.208 0.792 30 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 -14.769 1.636 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.225 4.225 3 Si 0.824 3.176 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.181 1.181 7 C -0.469 4.469 8 H 0.124 0.876 9 N -0.145 5.145 10 C 0.077 3.923 11 C -0.299 4.299 12 C 0.138 3.862 13 F -0.128 7.128 14 C -0.292 4.292 15 C 0.002 3.998 16 C -0.233 4.233 17 C -0.010 4.010 18 C -0.131 4.131 19 C -0.111 4.111 20 C -0.106 4.106 21 Cl 0.017 6.983 22 N -0.099 5.099 23 N -0.141 5.141 24 H 0.089 0.911 25 H 0.274 0.726 26 H 0.132 0.868 27 H 0.174 0.826 28 H 0.192 0.808 29 H 0.225 0.775 30 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.728 -12.554 1.383 12.922 hybrid contribution -0.113 0.227 0.113 0.277 sum -2.841 -12.328 1.496 12.739 Atomic orbital electron populations 1.69944 1.07551 1.29700 1.45591 1.26462 0.96531 1.03570 0.95952 0.84784 0.78141 0.75714 0.78941 1.19309 1.20078 1.18051 1.20286 0.93766 0.84096 1.48727 0.87550 1.42684 1.11896 1.02324 1.57630 1.17923 0.91184 0.86429 0.96804 1.20326 0.93304 0.97571 1.18705 1.17699 0.75873 0.94708 0.97873 1.91410 1.30665 1.97578 1.93194 1.20644 0.94720 0.96156 1.17668 1.20908 0.92681 0.96025 0.90207 1.17703 0.88379 0.93262 1.23962 1.21801 0.95204 0.91481 0.92554 1.22788 0.93786 0.99781 0.96741 1.22550 0.95018 0.97787 0.95743 1.23721 0.89562 0.93544 1.03772 1.98378 1.05331 1.98539 1.96034 1.72700 1.00597 1.27593 1.09014 1.72346 0.99504 1.25545 1.16679 0.91100 0.72580 0.86784 0.82576 0.80776 0.77501 0.77754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.40 13.05 21.65 0.28 -51.12 16 2 C -0.02 -1.18 5.50 84.86 0.47 -0.72 16 3 Si 1.00 41.81 29.55 68.60 2.03 43.84 16 4 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.34 -18.52 9.54 84.05 0.80 -17.72 16 8 H 0.11 5.52 5.72 -2.91 -0.02 5.50 16 9 N -0.54 -28.97 5.30 -183.79 -0.97 -29.94 16 10 C 0.21 9.63 6.61 38.66 0.26 9.88 16 11 C -0.27 -11.96 9.26 22.44 0.21 -11.75 16 12 C 0.16 5.82 7.29 22.40 0.16 5.99 16 13 F -0.15 -5.26 17.26 44.97 0.78 -4.48 16 14 C -0.27 -7.82 10.01 22.32 0.22 -7.60 16 15 C 0.02 0.58 9.42 22.46 0.21 0.80 16 16 C -0.22 -8.50 5.89 -19.90 -0.12 -8.62 16 17 C 0.13 4.83 6.79 42.03 0.29 5.11 16 18 C -0.10 -2.44 9.54 22.73 0.22 -2.22 16 19 C -0.08 -1.85 9.99 22.50 0.22 -1.63 16 20 C 0.07 2.19 7.37 84.83 0.62 2.81 16 21 Cl -0.01 -0.28 29.13 -2.72 -0.08 -0.36 16 22 N -0.26 -11.07 11.48 -49.77 -0.57 -11.64 16 23 N -0.30 -13.62 7.80 -48.41 -0.38 -13.99 16 24 H 0.28 15.05 8.31 -92.70 -0.77 14.28 16 25 H 0.42 23.62 4.03 -110.19 -0.44 23.18 16 26 H 0.11 5.18 6.00 -2.91 -0.02 5.17 16 27 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 28 H 0.18 2.77 6.29 -2.91 -0.02 2.76 16 29 H 0.21 2.57 6.35 -2.91 -0.02 2.55 16 30 H 0.21 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -69.77 284.92 5.44 -64.33 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 0.79 Total: 29.01 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 3.57 Total: -25.65 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -1.64 Total: -106.69 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.78 Total: -4.48 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -69.77 5.44 -64.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534888.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.611 kcal (2) G-P(sol) polarization free energy of solvation -69.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds