Wall clock time and date at job start Tue Mar 31 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29348 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48502 * 109.47092 * 239.99671 * 3 2 1 5 5 H 1.48492 * 109.47509 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46755 * 120.00378 * 3 2 1 7 7 C 1.46764 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99908 * 179.97438 * 7 2 1 9 9 N 1.32639 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.39160 * 120.00187 * 185.07254 * 9 7 2 11 11 C 1.38098 * 119.74383 * 353.52183 * 10 9 7 12 12 C 1.40202 * 119.44584 * 180.02562 * 11 10 9 13 13 C 1.40912 * 121.25230 * 179.97438 * 12 11 10 14 14 C 1.36501 * 118.17980 * 180.02562 * 13 12 11 15 15 C 1.39501 * 119.90979 * 359.97438 * 14 13 12 16 16 Cl 1.73598 * 119.13409 * 180.02562 * 15 14 13 17 17 N 1.31208 * 121.72944 * 0.02562 * 15 14 13 18 18 C 1.33692 * 121.36382 * 359.97438 * 17 15 14 19 19 C 1.40675 * 120.89058 * 179.97438 * 18 17 15 20 20 C 1.35849 * 120.03182 * 180.02562 * 19 18 17 21 21 N 1.48025 * 119.51521 * 180.02562 * 20 19 18 22 22 O 1.31700 * 119.99616 * 6.34089 * 21 20 19 23 23 O 1.31693 * 120.00110 * 186.35441 * 21 20 19 24 24 H 0.97000 * 120.00029 * 359.97438 * 1 2 3 25 25 H 0.96999 * 120.00378 * 5.06686 * 9 7 2 26 26 H 1.08001 * 120.27676 * 359.73028 * 11 10 9 27 27 H 1.07997 * 120.90371 * 0.05952 * 13 12 11 28 28 H 1.08006 * 120.04202 * 180.02562 * 14 13 12 29 29 H 1.07994 * 119.98048 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2935 0.0000 0.0000 3 14 2.2274 1.6178 0.0000 4 1 3.0812 1.6965 -1.2125 5 1 1.2624 2.7465 0.0006 6 1 3.0812 1.6964 1.2125 7 6 2.0273 -1.2710 0.0006 8 1 3.1073 -1.2710 0.0002 9 7 1.3641 -2.4197 0.0006 10 6 2.0558 -3.6225 0.1077 11 6 3.4365 -3.6238 0.0786 12 6 4.1269 -4.8393 0.1864 13 6 5.5351 -4.8849 0.1607 14 6 6.1427 -6.1023 0.2700 15 6 5.3699 -7.2560 0.4031 16 17 6.1636 -8.7937 0.5413 17 7 4.0588 -7.2094 0.4267 18 6 3.4018 -6.0496 0.3243 19 6 1.9958 -6.0112 0.3502 20 6 1.3460 -4.8229 0.2442 21 7 -0.1337 -4.7958 0.2734 22 8 -0.8076 -5.8988 0.5259 23 8 -0.7762 -3.6689 0.0466 24 1 -0.4850 0.8400 0.0004 25 1 0.3970 -2.4214 -0.0740 26 1 3.9797 -2.6969 -0.0311 27 1 6.1175 -3.9813 0.0578 28 1 7.2204 -6.1721 0.2542 29 1 1.4328 -6.9269 0.4544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155537884.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:10 Heat of formation + Delta-G solvation = 75.633324 kcal Electronic energy + Delta-G solvation = -20141.624380 eV Core-core repulsion = 16674.106185 eV Total energy + Delta-G solvation = -3467.518194 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.035 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.33784 -38.54023 -36.85541 -36.36691 -35.04590 -33.58084 -32.89715 -32.63548 -30.17183 -28.55554 -25.77876 -25.69356 -22.68025 -22.43325 -21.78367 -19.07489 -18.60141 -17.66100 -17.04454 -16.09296 -15.92661 -15.55288 -15.02830 -14.73364 -14.59174 -13.99512 -13.85170 -13.48183 -13.09764 -13.00233 -12.86883 -11.99180 -11.87072 -11.71321 -11.53398 -11.41155 -11.16212 -10.92966 -10.38297 -10.20840 -9.76282 -9.65366 -9.53525 -9.43535 -9.15348 -8.33959 -8.10765 -7.41075 -4.38941 0.03845 1.20118 1.50913 2.20909 2.40701 2.42601 2.51706 2.67282 2.68354 3.06047 3.11866 3.78608 4.27246 4.55332 4.88217 5.13127 5.20587 5.33302 5.42373 5.59373 5.85697 5.94124 6.09254 6.19401 6.26128 6.41357 6.45131 6.69994 6.89698 7.02912 7.05990 7.51035 8.03460 8.24920 8.31644 8.48926 8.90140 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.018054 B = 0.004754 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.535509 B = 5888.175473 C = 7421.128615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.727 5.727 2 C 0.029 3.971 3 Si 0.961 3.039 4 H -0.250 1.250 5 H -0.264 1.264 6 H -0.250 1.250 7 C -0.229 4.229 8 H 0.142 0.858 9 N -0.389 5.389 10 C 0.058 3.942 11 C -0.129 4.129 12 C -0.072 4.072 13 C -0.060 4.060 14 C -0.154 4.154 15 C 0.155 3.845 16 Cl -0.060 7.060 17 N -0.429 5.429 18 C 0.022 3.978 19 C 0.046 3.954 20 C -0.039 4.039 21 N 0.025 4.975 22 O -0.340 6.340 23 O -0.345 6.345 24 H 0.318 0.682 25 H 0.429 0.571 26 H 0.135 0.865 27 H 0.138 0.862 28 H 0.133 0.867 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.082 3.045 -0.507 12.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.352 5.352 2 C -0.200 4.200 3 Si 0.780 3.220 4 H -0.173 1.173 5 H -0.188 1.188 6 H -0.173 1.173 7 C -0.375 4.375 8 H 0.159 0.841 9 N 0.002 4.998 10 C -0.073 4.073 11 C -0.151 4.151 12 C -0.078 4.078 13 C -0.086 4.086 14 C -0.175 4.175 15 C -0.033 4.033 16 Cl -0.032 7.032 17 N -0.139 5.139 18 C -0.099 4.099 19 C 0.025 3.975 20 C -0.148 4.148 21 N 0.417 4.583 22 O -0.477 6.477 23 O -0.472 6.472 24 H 0.132 0.868 25 H 0.286 0.714 26 H 0.153 0.847 27 H 0.155 0.845 28 H 0.151 0.849 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 11.005 2.444 -0.430 11.281 hybrid contribution -0.085 1.148 -0.100 1.155 sum 10.920 3.591 -0.530 11.507 Atomic orbital electron populations 1.68731 1.08771 1.34284 1.23373 1.27918 0.95733 1.02543 0.93796 0.85389 0.79637 0.75543 0.81414 1.17327 1.18787 1.17323 1.22202 0.95700 0.82991 1.36623 0.84111 1.42422 1.14613 1.03431 1.39336 1.16685 0.91293 0.83464 1.15892 1.20232 0.90561 0.96785 1.07554 1.18168 0.93346 0.93558 1.02743 1.21211 0.93196 0.97344 0.96803 1.21203 1.00480 0.91482 1.04359 1.21214 0.89635 0.86401 1.06076 1.98344 1.77745 1.30703 1.96431 1.66787 1.08417 1.29244 1.09420 1.17389 0.91642 0.87202 1.13637 1.20104 0.92216 0.96547 0.88623 1.18800 0.76814 0.94739 1.24406 1.49478 1.02875 1.01703 1.04204 1.96087 1.68955 1.19297 1.63409 1.95674 1.69960 1.16013 1.65555 0.86827 0.71360 0.84718 0.84465 0.84893 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -14.20 13.09 56.00 0.73 -13.46 15 2 C 0.03 0.51 5.69 -15.15 -0.09 0.43 15 3 Si 0.96 12.42 29.65 -169.99 -5.04 7.38 15 4 H -0.25 -3.14 7.11 56.52 0.40 -2.74 15 5 H -0.26 -3.39 7.11 56.52 0.40 -2.99 15 6 H -0.25 -3.18 7.11 56.52 0.40 -2.77 15 7 C -0.23 -4.30 9.78 -13.76 -0.13 -4.43 15 8 H 0.14 2.21 5.70 -52.48 -0.30 1.91 15 9 N -0.39 -8.49 5.17 -8.42 -0.04 -8.53 15 10 C 0.06 1.23 6.58 -83.88 -0.55 0.68 15 11 C -0.13 -2.33 9.04 -38.90 -0.35 -2.68 15 12 C -0.07 -1.29 5.74 -106.80 -0.61 -1.90 15 13 C -0.06 -0.85 9.89 -39.20 -0.39 -1.23 15 14 C -0.15 -2.14 9.78 -39.74 -0.39 -2.53 15 15 C 0.16 2.56 7.26 -17.35 -0.13 2.43 15 16 Cl -0.06 -0.85 29.08 -51.86 -1.51 -2.36 15 17 N -0.43 -8.27 10.30 -8.05 -0.08 -8.35 15 18 C 0.02 0.45 6.61 -84.79 -0.56 -0.11 15 19 C 0.05 0.98 9.48 -39.52 -0.37 0.60 15 20 C -0.04 -0.92 6.84 -80.09 -0.55 -1.47 15 21 N 0.02 0.66 4.98 33.89 0.17 0.82 15 22 O -0.34 -9.36 19.08 -31.57 -0.60 -9.97 15 23 O -0.34 -9.53 16.26 -31.56 -0.51 -10.04 15 24 H 0.32 5.35 8.26 -40.82 -0.34 5.01 15 25 H 0.43 10.35 4.12 -42.44 -0.17 10.18 15 26 H 0.14 2.01 5.94 -52.49 -0.31 1.70 15 27 H 0.14 1.45 8.06 -52.49 -0.42 1.03 15 28 H 0.13 1.41 8.06 -52.48 -0.42 0.99 15 29 H 0.15 3.09 7.50 -52.49 -0.39 2.70 15 LS Contribution 283.29 15.07 4.27 4.27 Total: -1.00 -27.53 283.29 -7.90 -35.43 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -1.16 Total: 15.01 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -4.12 Total: -10.21 kcal Atomic # 7 Polarization: -30.29 SS G_CDS: 0.78 Total: -29.52 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -1.12 Total: -20.01 kcal Atomic # 14 Polarization: 12.42 SS G_CDS: -5.04 Total: 7.38 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.51 Total: -2.36 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.53 -7.90 -35.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537884.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.061 kcal (2) G-P(sol) polarization free energy of solvation -27.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds