Wall clock time and date at job start Tue Mar 31 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29348 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48502 * 109.47092 * 239.99671 * 3 2 1 5 5 H 1.48492 * 109.47509 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46755 * 120.00378 * 3 2 1 7 7 C 1.46764 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99908 * 179.97438 * 7 2 1 9 9 N 1.32639 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.39160 * 120.00187 * 185.07254 * 9 7 2 11 11 C 1.38098 * 119.74383 * 353.52183 * 10 9 7 12 12 C 1.40202 * 119.44584 * 180.02562 * 11 10 9 13 13 C 1.40912 * 121.25230 * 179.97438 * 12 11 10 14 14 C 1.36501 * 118.17980 * 180.02562 * 13 12 11 15 15 C 1.39501 * 119.90979 * 359.97438 * 14 13 12 16 16 Cl 1.73598 * 119.13409 * 180.02562 * 15 14 13 17 17 N 1.31208 * 121.72944 * 0.02562 * 15 14 13 18 18 C 1.33692 * 121.36382 * 359.97438 * 17 15 14 19 19 C 1.40675 * 120.89058 * 179.97438 * 18 17 15 20 20 C 1.35849 * 120.03182 * 180.02562 * 19 18 17 21 21 N 1.48025 * 119.51521 * 180.02562 * 20 19 18 22 22 O 1.31700 * 119.99616 * 6.34089 * 21 20 19 23 23 O 1.31693 * 120.00110 * 186.35441 * 21 20 19 24 24 H 0.97000 * 120.00029 * 359.97438 * 1 2 3 25 25 H 0.96999 * 120.00378 * 5.06686 * 9 7 2 26 26 H 1.08001 * 120.27676 * 359.73028 * 11 10 9 27 27 H 1.07997 * 120.90371 * 0.05952 * 13 12 11 28 28 H 1.08006 * 120.04202 * 180.02562 * 14 13 12 29 29 H 1.07994 * 119.98048 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2935 0.0000 0.0000 3 14 2.2274 1.6178 0.0000 4 1 3.0812 1.6965 -1.2125 5 1 1.2624 2.7465 0.0006 6 1 3.0812 1.6964 1.2125 7 6 2.0273 -1.2710 0.0006 8 1 3.1073 -1.2710 0.0002 9 7 1.3641 -2.4197 0.0006 10 6 2.0558 -3.6225 0.1077 11 6 3.4365 -3.6238 0.0786 12 6 4.1269 -4.8393 0.1864 13 6 5.5351 -4.8849 0.1607 14 6 6.1427 -6.1023 0.2700 15 6 5.3699 -7.2560 0.4031 16 17 6.1636 -8.7937 0.5413 17 7 4.0588 -7.2094 0.4267 18 6 3.4018 -6.0496 0.3243 19 6 1.9958 -6.0112 0.3502 20 6 1.3460 -4.8229 0.2442 21 7 -0.1337 -4.7958 0.2734 22 8 -0.8076 -5.8988 0.5259 23 8 -0.7762 -3.6689 0.0466 24 1 -0.4850 0.8400 0.0004 25 1 0.3970 -2.4214 -0.0740 26 1 3.9797 -2.6969 -0.0311 27 1 6.1175 -3.9813 0.0578 28 1 7.2204 -6.1721 0.2542 29 1 1.4328 -6.9269 0.4544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155537884.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:08 Heat of formation + Delta-G solvation = 49.881238 kcal Electronic energy + Delta-G solvation = -20142.741074 eV Core-core repulsion = 16674.106185 eV Total energy + Delta-G solvation = -3468.634889 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.035 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.82479 -40.37703 -37.98868 -37.43616 -36.49631 -35.43172 -34.18328 -33.08072 -31.23086 -30.32428 -27.79540 -26.68131 -24.27942 -23.60178 -23.24644 -21.06579 -20.07120 -19.01710 -18.31595 -17.68359 -16.86371 -16.74790 -16.57933 -16.06442 -15.95535 -15.41167 -15.20765 -14.66544 -14.58395 -14.38101 -14.08084 -13.77528 -13.44426 -12.97229 -12.90998 -12.81992 -12.17140 -12.12786 -11.64455 -11.38054 -11.28032 -10.49518 -10.43962 -10.29321 -10.23308 -10.13700 -9.54886 -9.13467 -6.22099 -1.41058 -0.12859 0.24166 0.90491 1.03425 1.11385 1.40181 1.66628 1.91472 1.96171 2.11466 2.13408 2.34933 3.11623 3.22800 3.52410 3.71118 3.84614 4.07535 4.18015 4.26727 4.40736 4.60073 4.63453 4.89116 5.04270 5.16312 5.30576 5.38423 5.61286 5.73540 5.94462 6.02847 6.71348 7.05419 7.27059 8.17314 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.018054 B = 0.004754 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.535509 B = 5888.175473 C = 7421.128615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.661 5.661 2 C -0.047 4.047 3 Si 1.060 2.940 4 H -0.207 1.207 5 H -0.264 1.264 6 H -0.212 1.212 7 C 0.127 3.873 8 H 0.259 0.741 9 N -0.389 5.389 10 C -0.046 4.046 11 C 0.033 3.967 12 C -0.212 4.212 13 C 0.037 3.963 14 C -0.231 4.231 15 C 0.231 3.769 16 Cl -0.045 7.045 17 N -0.551 5.551 18 C 0.165 3.835 19 C -0.202 4.202 20 C 0.061 3.939 21 N -0.096 5.096 22 O -0.670 6.670 23 O -0.620 6.620 24 H 0.364 0.636 25 H 0.426 0.574 26 H 0.227 0.773 27 H 0.215 0.785 28 H 0.179 0.821 29 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.256 21.147 -1.976 33.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.284 5.284 2 C -0.282 4.282 3 Si 0.866 3.134 4 H -0.129 1.129 5 H -0.188 1.188 6 H -0.134 1.134 7 C -0.052 4.052 8 H 0.275 0.725 9 N 0.004 4.996 10 C -0.154 4.154 11 C 0.014 3.986 12 C -0.218 4.218 13 C 0.012 3.988 14 C -0.253 4.253 15 C 0.046 3.954 16 Cl -0.017 7.017 17 N -0.264 5.264 18 C 0.048 3.952 19 C -0.228 4.228 20 C -0.070 4.070 21 N 0.192 4.808 22 O -0.736 6.736 23 O -0.679 6.679 24 H 0.183 0.817 25 H 0.289 0.711 26 H 0.243 0.757 27 H 0.232 0.768 28 H 0.197 0.803 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 24.361 19.972 -1.862 31.557 hybrid contribution -2.302 -0.675 0.061 2.400 sum 22.059 19.297 -1.800 29.364 Atomic orbital electron populations 1.68812 1.12154 1.40329 1.07101 1.30832 0.97167 1.06057 0.94125 0.84143 0.78352 0.66154 0.84736 1.12855 1.18795 1.13383 1.26979 1.02623 0.82923 0.92696 0.72524 1.44586 1.18366 1.05803 1.30836 1.17288 0.92753 0.82155 1.23168 1.21482 0.87523 1.00000 0.89569 1.18329 0.95818 0.92164 1.15507 1.21892 0.90181 0.99639 0.87100 1.21533 1.02378 0.90148 1.11266 1.22422 0.89568 0.88480 0.94975 1.98366 1.76853 1.30742 1.95695 1.66992 1.10139 1.30389 1.18925 1.17906 0.90693 0.88702 0.97882 1.19019 0.92903 0.95046 1.15809 1.19085 0.78466 0.95200 1.14282 1.47544 1.00476 0.99740 1.32991 1.95651 1.70713 1.23288 1.83972 1.94979 1.70373 1.18349 1.84232 0.81688 0.71080 0.75689 0.76785 0.80332 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 62. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -16.53 13.09 23.25 0.30 -16.23 15 2 C -0.05 -0.72 5.69 87.29 0.50 -0.22 15 3 Si 1.06 3.05 29.65 68.60 2.03 5.08 15 4 H -0.21 0.05 7.11 99.48 0.71 0.76 15 5 H -0.26 -1.58 7.11 99.48 0.71 -0.88 15 6 H -0.21 -0.11 7.11 99.48 0.71 0.60 15 7 C 0.13 2.16 9.78 86.80 0.85 3.01 15 8 H 0.26 -0.01 5.70 -2.91 -0.02 -0.03 15 9 N -0.39 -14.22 5.17 -180.54 -0.93 -15.16 15 10 C -0.05 -1.91 6.58 38.40 0.25 -1.66 15 11 C 0.03 0.84 9.04 22.71 0.21 1.04 15 12 C -0.21 -6.50 5.74 -21.28 -0.12 -6.62 15 13 C 0.04 0.66 9.89 22.52 0.22 0.88 15 14 C -0.23 -5.01 9.78 22.17 0.22 -4.79 15 15 C 0.23 7.63 7.26 85.09 0.62 8.25 15 16 Cl -0.04 -1.28 29.08 -2.72 -0.08 -1.36 15 17 N -0.55 -24.59 10.30 -179.38 -1.85 -26.44 15 18 C 0.17 7.66 6.61 40.33 0.27 7.93 15 19 C -0.20 -12.23 9.48 22.31 0.21 -12.02 15 20 C 0.06 3.76 6.84 36.28 0.25 4.00 15 21 N -0.10 -7.54 4.98 -46.69 -0.23 -7.77 15 22 O -0.67 -60.36 19.08 3.51 0.07 -60.29 15 23 O -0.62 -47.75 16.26 3.53 0.06 -47.69 15 24 H 0.36 6.78 8.26 -92.71 -0.77 6.01 15 25 H 0.43 20.79 4.12 -118.38 -0.49 20.30 15 26 H 0.23 1.17 5.94 -2.91 -0.02 1.15 15 27 H 0.22 0.63 8.06 -2.91 -0.02 0.61 15 28 H 0.18 2.29 8.06 -2.91 -0.02 2.27 15 29 H 0.07 4.83 7.50 -2.91 -0.02 4.81 15 Total: -1.00 -138.05 283.29 3.60 -134.45 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.76 Total: 35.60 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 3.47 Total: -0.19 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -2.71 Total: -65.59 kcal Atomic # 8 Polarization: -108.11 SS G_CDS: 0.12 Total: -107.99 kcal Atomic # 14 Polarization: 3.05 SS G_CDS: 2.03 Total: 5.08 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -138.05 3.60 -134.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537884.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.330 kcal (2) G-P(sol) polarization free energy of solvation -138.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -134.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds