Wall clock time and date at job start Tue Mar 31 2020 06:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31491 * 119.81871 * 2 1 4 4 C 1.32734 * 121.72977 * 179.97438 * 3 2 1 5 5 N 1.38378 * 119.42763 * 180.02562 * 4 3 2 6 6 C 1.46490 * 119.99810 * 186.72769 * 5 4 3 7 7 H 1.08998 * 110.63895 * 15.31904 * 6 5 4 8 8 S 1.82482 * 110.70762 * 252.21022 * 6 5 4 9 9 C 1.77278 * 94.25960 * 241.62426 * 8 6 5 10 10 O 1.21581 * 126.16170 * 180.02562 * 9 8 6 11 11 N 1.33471 * 107.67829 * 359.97438 * 9 8 6 12 12 C 1.32624 * 121.32737 * 359.88349 * 11 9 8 13 13 O 1.21237 * 123.32786 * 180.14220 * 12 11 9 14 14 C 1.39708 * 121.14334 * 359.97438 * 4 3 2 15 15 C 1.36561 * 119.49402 * 0.02562 * 14 4 3 16 16 C 1.40760 * 119.81494 * 180.02562 * 2 1 3 17 17 C 1.41195 * 120.57178 * 0.02562 * 16 2 1 18 18 H 1.08005 * 119.99839 * 29.16422 * 17 16 2 19 19 C 1.39868 * 120.00369 * 209.16951 * 17 16 2 20 20 N 1.30904 * 119.99909 * 20.14443 * 19 17 16 21 21 Si 1.86800 * 120.00041 * 200.15031 * 19 17 16 22 22 H 1.48498 * 109.47355 * 59.99677 * 21 19 17 23 23 H 1.48503 * 109.46989 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47009 * 299.99604 * 21 19 17 25 25 H 1.09007 * 109.47257 * 89.99291 * 1 2 3 26 26 H 1.08999 * 109.47221 * 209.99541 * 1 2 3 27 27 H 1.08999 * 109.47163 * 329.99695 * 1 2 3 28 28 H 0.97003 * 119.99770 * 6.72596 * 5 4 3 29 29 H 0.96998 * 119.37184 * 180.02562 * 11 9 8 30 30 H 1.07998 * 120.25134 * 179.97438 * 14 4 3 31 31 H 1.07994 * 120.79769 * 179.72589 * 15 14 4 32 32 H 0.96993 * 119.99953 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4874 1.1851 0.0005 5 7 4.1267 2.4123 0.0010 6 6 5.5825 2.4798 -0.1470 7 1 5.9761 1.5309 -0.5113 8 16 6.3711 2.9414 1.4325 9 6 7.0745 4.4389 0.7959 10 8 7.7559 5.2319 1.4164 11 7 6.7224 4.5385 -0.4877 12 6 5.9753 3.6113 -1.0716 13 8 5.6366 3.6638 -2.2345 14 6 4.2494 0.0141 0.0016 15 6 3.6199 -1.1977 0.0016 16 6 2.2068 -1.2213 -0.0005 17 6 1.5091 -2.4488 -0.0016 18 1 0.5323 -2.5144 -0.4579 19 6 2.0827 -3.5799 0.5882 20 7 3.0450 -3.4439 1.4652 21 14 1.4759 -5.2846 0.1243 22 1 1.6721 -5.5007 -1.3317 23 1 2.2412 -6.3060 0.8834 24 1 0.0323 -5.4022 0.4520 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 3.6108 3.2279 0.0994 29 1 7.0203 5.3031 -1.0048 30 1 5.3281 0.0669 0.0016 31 1 4.1881 -2.1160 -0.0020 32 1 3.4430 -4.2282 1.8740 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155844585.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:18 Heat of formation + Delta-G solvation = -18.505912 kcal Electronic energy + Delta-G solvation = -20254.501391 eV Core-core repulsion = 16920.777814 eV Total energy + Delta-G solvation = -3333.723577 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.53697 -39.22210 -38.78138 -36.05439 -35.52754 -33.77328 -31.37959 -30.68200 -27.87389 -26.98242 -25.03054 -24.48042 -22.21139 -21.59616 -20.15823 -18.74483 -18.30674 -17.51613 -17.27304 -16.72695 -16.04040 -15.61906 -15.42329 -15.28633 -14.48969 -14.45003 -13.93696 -13.58018 -13.35785 -12.53565 -12.32659 -12.08217 -11.80088 -11.60167 -11.46201 -11.27915 -11.24223 -11.00584 -10.87757 -10.70601 -10.23357 -9.95900 -9.51749 -9.04763 -8.72640 -8.42222 -8.26829 -7.11327 -6.85306 -4.40507 0.65497 0.82032 1.31800 2.17881 2.42994 2.58821 2.80351 3.00217 3.02130 3.13489 3.48343 3.58088 3.83182 4.49373 4.65764 5.35540 5.43093 5.72115 6.00599 6.08381 6.15635 6.28186 6.55696 6.57907 6.66288 6.84944 6.98501 7.02615 7.16605 7.23145 7.29550 7.66491 7.86087 8.00823 8.32852 8.62110 8.64953 9.43474 10.03337 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.027456 B = 0.003831 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.582404 B = 7306.308776 C = 7719.383572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.037 3.963 3 N -0.497 5.497 4 C 0.248 3.752 5 N -0.674 5.674 6 C 0.175 3.825 7 H 0.169 0.831 8 S -0.171 6.171 9 C 0.549 3.451 10 O -0.446 6.446 11 N -0.681 5.681 12 C 0.523 3.477 13 O -0.445 6.445 14 C -0.190 4.190 15 C -0.095 4.095 16 C 0.053 3.947 17 C -0.452 4.452 18 H 0.085 0.915 19 C 0.078 3.922 20 N -0.791 5.791 21 Si 0.907 3.093 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.264 1.264 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.403 0.597 29 H 0.417 0.583 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.249 6.886 -2.398 8.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 N -0.211 5.211 4 C 0.018 3.982 5 N -0.313 5.313 6 C -0.050 4.050 7 H 0.186 0.814 8 S 0.051 5.949 9 C 0.228 3.772 10 O -0.319 6.319 11 N -0.350 5.350 12 C 0.303 3.697 13 O -0.313 6.313 14 C -0.213 4.213 15 C -0.121 4.121 16 C 0.047 3.953 17 C -0.482 4.482 18 H 0.103 0.897 19 C -0.141 4.141 20 N -0.416 5.416 21 Si 0.731 3.269 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.188 1.188 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.239 0.761 29 H 0.257 0.743 30 H 0.116 0.884 31 H 0.139 0.861 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.177 7.139 -1.316 8.917 hybrid contribution 0.438 -0.355 -1.272 1.392 sum 5.615 6.784 -2.588 9.179 Atomic orbital electron populations 1.20267 0.90700 1.01420 1.00484 1.20780 0.94883 0.87012 1.07650 1.66173 1.06848 1.31649 1.16403 1.17370 0.88617 0.83526 1.08686 1.43334 1.00402 1.07476 1.80047 1.23407 0.88097 1.02279 0.91177 0.81362 1.88756 1.60376 1.22088 1.23708 1.21970 0.81820 0.90684 0.82694 1.90932 1.36352 1.44159 1.60425 1.44563 1.49874 1.26834 1.13779 1.20589 0.77223 0.83235 0.88619 1.90884 1.50316 1.75227 1.14846 1.20726 0.97884 0.92872 1.09848 1.21078 0.94798 0.95781 1.00468 1.18207 0.92061 0.93218 0.91777 1.19373 1.03936 0.92576 1.32301 0.89707 1.25906 0.94009 1.01554 0.92662 1.69822 1.20805 1.32939 1.18032 0.86374 0.79922 0.80630 0.79954 1.18738 1.20333 1.18837 0.93191 0.91088 0.93197 0.76117 0.74286 0.88370 0.86089 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 9.58 36.00 0.35 -1.06 16 2 C 0.04 0.87 6.86 -81.79 -0.56 0.31 16 3 N -0.50 -11.19 10.29 -8.04 -0.08 -11.27 16 4 C 0.25 5.11 7.63 -155.12 -1.18 3.93 16 5 N -0.67 -10.98 5.24 -57.79 -0.30 -11.28 16 6 C 0.18 2.33 3.73 -4.90 -0.02 2.31 16 7 H 0.17 2.14 5.76 -51.93 -0.30 1.84 16 8 S -0.17 -2.24 23.14 -107.50 -2.49 -4.72 16 9 C 0.55 6.58 8.91 53.47 0.48 7.06 16 10 O -0.45 -6.31 18.05 5.29 0.10 -6.21 16 11 N -0.68 -6.84 5.06 -14.70 -0.07 -6.91 16 12 C 0.52 6.34 7.87 -11.64 -0.09 6.25 16 13 O -0.45 -6.57 18.02 5.59 0.10 -6.47 16 14 C -0.19 -3.95 9.15 -39.64 -0.36 -4.31 16 15 C -0.10 -2.23 8.72 -39.01 -0.34 -2.57 16 16 C 0.05 1.28 5.51 -106.65 -0.59 0.70 16 17 C -0.45 -10.85 8.00 -37.85 -0.30 -11.15 16 18 H 0.08 1.94 7.06 -52.48 -0.37 1.57 16 19 C 0.08 1.79 5.07 -17.34 -0.09 1.70 16 20 N -0.79 -18.95 11.47 55.54 0.64 -18.32 16 21 Si 0.91 17.27 29.60 -169.99 -5.03 12.24 16 22 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 23 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.07 1.38 6.83 -51.93 -0.35 1.03 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.40 6.20 8.91 -40.82 -0.36 5.84 16 29 H 0.42 3.23 8.88 -40.82 -0.36 2.86 16 30 H 0.10 1.73 5.98 -52.49 -0.31 1.42 16 31 H 0.12 2.88 6.71 -52.49 -0.35 2.52 16 32 H 0.28 6.23 8.30 -40.82 -0.34 5.90 16 LS Contribution 297.93 15.07 4.49 4.49 Total: -1.00 -27.56 297.93 -7.77 -35.33 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -2.40 Total: 9.97 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -2.71 Total: 3.16 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.18 Total: -47.78 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.20 Total: -12.69 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Atomic # 16 Polarization: -2.24 SS G_CDS: -2.49 Total: -4.72 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.56 -7.77 -35.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155844585.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.822 kcal (2) G-P(sol) polarization free energy of solvation -27.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds