Wall clock time and date at job start Tue Mar 31 2020 06:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31491 * 119.81871 * 2 1 4 4 C 1.32734 * 121.72977 * 179.97438 * 3 2 1 5 5 N 1.38378 * 119.42763 * 180.02562 * 4 3 2 6 6 C 1.46490 * 119.99810 * 186.72769 * 5 4 3 7 7 H 1.08998 * 110.63895 * 15.31904 * 6 5 4 8 8 S 1.82482 * 110.70762 * 252.21022 * 6 5 4 9 9 C 1.77278 * 94.25960 * 241.62426 * 8 6 5 10 10 O 1.21581 * 126.16170 * 180.02562 * 9 8 6 11 11 N 1.33471 * 107.67829 * 359.97438 * 9 8 6 12 12 C 1.32624 * 121.32737 * 359.88349 * 11 9 8 13 13 O 1.21237 * 123.32786 * 180.14220 * 12 11 9 14 14 C 1.39708 * 121.14334 * 359.97438 * 4 3 2 15 15 C 1.36561 * 119.49402 * 0.02562 * 14 4 3 16 16 C 1.40760 * 119.81494 * 180.02562 * 2 1 3 17 17 C 1.41195 * 120.57178 * 0.02562 * 16 2 1 18 18 H 1.08005 * 119.99839 * 29.16422 * 17 16 2 19 19 C 1.39868 * 120.00369 * 209.16951 * 17 16 2 20 20 N 1.30904 * 119.99909 * 20.14443 * 19 17 16 21 21 Si 1.86800 * 120.00041 * 200.15031 * 19 17 16 22 22 H 1.48498 * 109.47355 * 59.99677 * 21 19 17 23 23 H 1.48503 * 109.46989 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47009 * 299.99604 * 21 19 17 25 25 H 1.09007 * 109.47257 * 89.99291 * 1 2 3 26 26 H 1.08999 * 109.47221 * 209.99541 * 1 2 3 27 27 H 1.08999 * 109.47163 * 329.99695 * 1 2 3 28 28 H 0.97003 * 119.99770 * 6.72596 * 5 4 3 29 29 H 0.96998 * 119.37184 * 180.02562 * 11 9 8 30 30 H 1.07998 * 120.25134 * 179.97438 * 14 4 3 31 31 H 1.07994 * 120.79769 * 179.72589 * 15 14 4 32 32 H 0.96993 * 119.99953 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4874 1.1851 0.0005 5 7 4.1267 2.4123 0.0010 6 6 5.5825 2.4798 -0.1470 7 1 5.9761 1.5309 -0.5113 8 16 6.3711 2.9414 1.4325 9 6 7.0745 4.4389 0.7959 10 8 7.7559 5.2319 1.4164 11 7 6.7224 4.5385 -0.4877 12 6 5.9753 3.6113 -1.0716 13 8 5.6366 3.6638 -2.2345 14 6 4.2494 0.0141 0.0016 15 6 3.6199 -1.1977 0.0016 16 6 2.2068 -1.2213 -0.0005 17 6 1.5091 -2.4488 -0.0016 18 1 0.5323 -2.5144 -0.4579 19 6 2.0827 -3.5799 0.5882 20 7 3.0450 -3.4439 1.4652 21 14 1.4759 -5.2846 0.1243 22 1 1.6721 -5.5007 -1.3317 23 1 2.2412 -6.3060 0.8834 24 1 0.0323 -5.4022 0.4520 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 3.6108 3.2279 0.0994 29 1 7.0203 5.3031 -1.0048 30 1 5.3281 0.0669 0.0016 31 1 4.1881 -2.1160 -0.0020 32 1 3.4430 -4.2282 1.8740 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155844585.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:17 Heat of formation + Delta-G solvation = -37.726652 kcal Electronic energy + Delta-G solvation = -20255.334865 eV Core-core repulsion = 16920.777814 eV Total energy + Delta-G solvation = -3334.557051 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.59585 -40.66162 -40.09089 -37.29466 -36.82470 -35.41300 -33.02999 -32.29687 -29.23949 -28.57550 -26.14293 -26.04713 -23.43741 -23.25130 -21.66662 -19.83536 -19.37081 -19.17976 -18.64885 -17.99384 -17.16411 -16.93840 -16.88817 -16.53743 -15.94658 -15.64081 -15.48404 -15.06424 -14.84772 -14.03535 -13.80258 -13.59829 -13.46046 -13.23212 -12.79711 -12.78760 -12.61617 -12.49620 -12.22301 -11.90316 -11.63560 -11.35567 -11.11731 -10.55325 -10.13171 -9.98372 -9.85358 -8.77581 -8.50490 -6.16537 -0.42931 -0.23683 0.20414 0.83133 1.05516 1.17805 1.44444 1.46136 1.54522 1.61491 2.19344 2.26062 2.48011 2.80183 3.53339 3.69631 4.14780 4.41718 4.53147 4.59063 4.63041 5.02473 5.04840 5.06478 5.18538 5.32303 5.36834 5.52877 5.58657 5.67270 5.95055 6.20286 6.23114 6.42263 6.64393 6.89562 6.92838 7.72914 8.36665 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.027456 B = 0.003831 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.582404 B = 7306.308776 C = 7719.383572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.020 3.980 3 N -0.515 5.515 4 C 0.263 3.737 5 N -0.675 5.675 6 C 0.173 3.827 7 H 0.178 0.822 8 S -0.165 6.165 9 C 0.563 3.437 10 O -0.460 6.460 11 N -0.661 5.661 12 C 0.541 3.459 13 O -0.466 6.466 14 C -0.196 4.196 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.482 4.482 18 H 0.086 0.914 19 C 0.042 3.958 20 N -0.827 5.827 21 Si 0.974 3.026 22 H -0.262 1.262 23 H -0.273 1.273 24 H -0.259 1.259 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.408 0.592 29 H 0.433 0.567 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.947 7.716 -2.717 10.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 N -0.230 5.230 4 C 0.031 3.969 5 N -0.315 5.315 6 C -0.051 4.051 7 H 0.195 0.805 8 S 0.057 5.943 9 C 0.242 3.758 10 O -0.334 6.334 11 N -0.332 5.332 12 C 0.322 3.678 13 O -0.335 6.335 14 C -0.219 4.219 15 C -0.137 4.137 16 C 0.014 3.986 17 C -0.512 4.512 18 H 0.104 0.896 19 C -0.174 4.174 20 N -0.453 5.453 21 Si 0.796 3.204 22 H -0.187 1.187 23 H -0.198 1.198 24 H -0.183 1.183 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.245 0.755 29 H 0.276 0.724 30 H 0.146 0.854 31 H 0.127 0.873 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.895 8.018 -1.639 10.086 hybrid contribution 0.379 -0.375 -1.146 1.264 sum 6.274 7.643 -2.785 10.273 Atomic orbital electron populations 1.20247 0.88873 1.01715 1.01400 1.21266 0.96472 0.86983 1.07262 1.66300 1.07757 1.31352 1.17563 1.17670 0.88355 0.85016 1.05862 1.43247 1.01602 1.06171 1.80465 1.23579 0.86519 1.03553 0.91461 0.80533 1.88825 1.60157 1.22857 1.22491 1.21711 0.81270 0.89919 0.82867 1.90947 1.37117 1.44513 1.60823 1.44218 1.48948 1.26831 1.13171 1.20138 0.76916 0.82881 0.87849 1.90901 1.51275 1.75553 1.15722 1.20974 0.99542 0.92121 1.09264 1.21122 0.94820 0.96391 1.01345 1.18526 0.92808 0.94050 0.93180 1.19562 1.04515 0.93418 1.33687 0.89605 1.26622 0.94010 1.04701 0.92042 1.69872 1.22271 1.34006 1.19158 0.85360 0.79472 0.76194 0.79421 1.18657 1.19792 1.18335 0.91874 0.91440 0.92106 0.75468 0.72385 0.85366 0.87266 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.56 9.58 71.23 0.68 -1.87 16 2 C 0.02 0.92 6.86 43.22 0.30 1.21 16 3 N -0.51 -22.99 10.29 -179.36 -1.85 -24.83 16 4 C 0.26 10.59 7.63 133.32 1.02 11.61 16 5 N -0.68 -20.80 5.24 -336.74 -1.77 -22.57 16 6 C 0.17 4.19 3.73 85.83 0.32 4.51 16 7 H 0.18 4.05 5.76 -2.39 -0.01 4.04 16 8 S -0.17 -3.93 23.14 -56.49 -1.31 -5.24 16 9 C 0.56 11.94 8.91 129.99 1.16 13.10 16 10 O -0.46 -11.84 18.05 -3.97 -0.07 -11.91 16 11 N -0.66 -11.34 5.06 -439.00 -2.22 -13.57 16 12 C 0.54 11.71 7.87 88.18 0.69 12.40 16 13 O -0.47 -12.66 18.02 -2.90 -0.05 -12.71 16 14 C -0.20 -8.02 9.15 22.23 0.20 -7.82 16 15 C -0.11 -5.27 8.72 22.64 0.20 -5.07 16 16 C 0.02 0.97 5.51 -21.18 -0.12 0.86 16 17 C -0.48 -23.69 8.00 23.39 0.19 -23.50 16 18 H 0.09 4.02 7.06 -2.91 -0.02 4.00 16 19 C 0.04 1.94 5.07 85.23 0.43 2.38 16 20 N -0.83 -40.51 11.47 21.82 0.25 -40.26 16 21 Si 0.97 35.69 29.60 68.60 2.03 37.72 16 22 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 23 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 24 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 25 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 26 H 0.07 2.66 6.83 -2.39 -0.02 2.65 16 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.41 11.81 8.91 -92.71 -0.83 10.99 16 29 H 0.43 5.33 8.88 -92.71 -0.82 4.50 16 30 H 0.13 4.32 5.98 -2.91 -0.02 4.31 16 31 H 0.11 5.36 6.71 -2.91 -0.02 5.34 16 32 H 0.29 12.90 8.30 -92.71 -0.77 12.13 16 Total: -1.00 -59.03 297.93 -0.34 -59.37 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -0.42 Total: 26.19 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 5.07 Total: 7.80 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -5.58 Total: -101.22 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.12 Total: -24.62 kcal Atomic # 14 Polarization: 35.69 SS G_CDS: 2.03 Total: 37.72 kcal Atomic # 16 Polarization: -3.93 SS G_CDS: -1.31 Total: -5.24 kcal Total: -59.03 -0.34 -59.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155844585.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.645 kcal (2) G-P(sol) polarization free energy of solvation -59.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds