Wall clock time and date at job start Tue Mar 31 2020 06:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86791 * 120.00263 * 2 1 4 4 H 1.48492 * 109.47231 * 274.98839 * 3 2 1 5 5 H 1.48504 * 109.46993 * 34.98731 * 3 2 1 6 6 H 1.48497 * 109.47310 * 154.98173 * 3 2 1 7 7 C 1.40311 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99683 * 189.78331 * 7 2 1 9 9 C 1.40537 * 120.00108 * 9.79498 * 7 2 1 10 10 C 1.44187 * 123.71867 * 23.63028 * 9 7 2 11 11 C 1.32766 * 114.43066 * 180.29461 * 10 9 7 12 12 S 1.75469 * 111.36357 * 359.73568 * 11 10 9 13 13 C 1.39550 * 123.71100 * 203.42852 * 9 7 2 14 14 C 1.46232 * 125.22956 * 359.97438 * 13 9 7 15 15 O 1.21763 * 120.00295 * 359.72808 * 14 13 9 16 16 N 1.34778 * 120.00160 * 179.72115 * 14 13 9 17 17 C 1.46497 * 120.00220 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47153 * 179.97438 * 17 16 14 19 19 C 1.34423 * 126.54221 * 264.68705 * 18 17 16 20 20 N 1.34362 * 108.26444 * 179.89794 * 19 18 17 21 21 C 1.31011 * 109.30123 * 0.37666 * 20 19 18 22 22 O 1.35511 * 125.76326 * 179.73625 * 21 20 19 23 23 N 1.35880 * 108.47662 * 359.76928 * 21 20 19 24 24 H 0.96995 * 126.48585 * 180.02562 * 23 21 20 25 25 H 0.96994 * 119.99938 * 359.97438 * 1 2 3 26 26 H 1.07998 * 122.78527 * 0.03182 * 10 9 7 27 27 H 1.08003 * 124.31980 * 179.77502 * 11 10 9 28 28 H 0.97000 * 119.99656 * 359.97438 * 16 14 13 29 29 H 1.09002 * 109.47359 * 300.00302 * 17 16 14 30 30 H 1.09000 * 109.46885 * 59.99998 * 17 16 14 31 31 H 1.07997 * 125.86629 * 359.97438 * 19 18 17 32 32 H 0.96700 * 113.99426 * 270.03842 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 2.3826 2.1072 -1.3947 5 1 1.4946 2.6199 0.8028 6 1 3.5867 1.4119 0.5921 7 6 2.0079 -1.2152 0.0005 8 1 3.0762 -1.2219 0.1595 9 6 1.3205 -2.4234 -0.2060 10 6 0.0553 -2.5175 -0.8910 11 6 -0.4324 -3.7494 -0.9768 12 16 0.6386 -4.9151 -0.2198 13 6 1.7894 -3.6648 0.2259 14 6 3.0432 -3.8897 0.9442 15 8 3.7723 -2.9501 1.2051 16 7 3.3916 -5.1370 1.3175 17 6 4.6474 -5.3622 2.0375 18 6 4.7987 -6.8315 2.3362 19 6 4.4546 -7.4562 3.4756 20 7 4.7462 -8.7613 3.3449 21 6 5.2695 -8.9718 2.1625 22 8 5.6895 -10.1679 1.6838 23 7 5.3207 -7.7880 1.4973 24 1 5.6607 -7.6448 0.6003 25 1 -0.4850 0.8400 0.0004 26 1 -0.4555 -1.6568 -1.2968 27 1 -1.3687 -4.0019 -1.4524 28 1 2.8106 -5.8854 1.1100 29 1 5.4835 -5.0279 1.4232 30 1 4.6360 -4.8011 2.9720 31 1 4.0175 -6.9895 4.3460 32 1 6.6168 -10.3644 1.8751 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160386695.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:00 Heat of formation + Delta-G solvation = 4.211403 kcal Electronic energy + Delta-G solvation = -19945.067270 eV Core-core repulsion = 16612.328790 eV Total energy + Delta-G solvation = -3332.738480 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.16539 -38.38707 -37.51565 -36.09745 -34.03292 -33.10063 -32.57064 -29.97933 -28.88549 -26.60430 -24.89671 -22.19669 -21.82437 -21.11426 -20.06927 -19.32394 -18.79519 -17.75528 -16.99350 -15.95284 -15.65725 -15.52329 -14.81662 -14.48896 -14.27036 -13.82372 -13.81748 -13.65228 -12.98977 -12.50341 -12.38608 -12.10221 -11.97491 -11.82530 -11.47413 -11.17558 -11.00120 -10.45771 -10.23709 -10.18140 -10.16472 -9.67569 -9.29833 -8.75585 -8.38928 -8.29419 -7.53498 -7.17888 -7.08744 -4.57638 1.62419 2.11405 2.43805 2.85242 2.92849 2.97061 3.05588 3.09844 3.60553 3.75976 3.82200 3.85591 4.20551 4.36216 4.71651 5.04653 5.20646 5.33364 5.46668 5.78171 6.01843 6.10134 6.37361 6.58914 6.64393 6.79614 7.12442 7.13949 7.18126 7.43012 7.49459 7.65617 7.77624 8.30605 8.37092 8.55135 8.71614 9.48924 9.82179 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.023569 B = 0.003854 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.702528 B = 7264.229050 C = 8153.903248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.067 3.933 3 Si 0.925 3.075 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.253 1.253 7 C -0.376 4.376 8 H 0.112 0.888 9 C 0.141 3.859 10 C -0.100 4.100 11 C -0.204 4.204 12 S -0.052 6.052 13 C -0.431 4.431 14 C 0.601 3.399 15 O -0.563 6.563 16 N -0.751 5.751 17 C 0.203 3.797 18 C -0.018 4.018 19 C 0.007 3.993 20 N -0.483 5.483 21 C 0.375 3.625 22 O -0.443 6.443 23 N -0.565 5.565 24 H 0.420 0.580 25 H 0.289 0.711 26 H 0.146 0.854 27 H 0.138 0.862 28 H 0.392 0.608 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.180 0.820 32 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.957 -8.573 0.575 11.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.155 4.155 3 Si 0.748 3.252 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.176 1.176 7 C -0.407 4.407 8 H 0.130 0.870 9 C 0.130 3.870 10 C -0.132 4.132 11 C -0.338 4.338 12 S 0.203 5.797 13 C -0.550 4.550 14 C 0.399 3.601 15 O -0.446 6.446 16 N -0.405 5.405 17 C 0.078 3.922 18 C -0.133 4.133 19 C -0.142 4.142 20 N -0.213 5.213 21 C 0.074 3.926 22 O -0.244 6.244 23 N -0.181 5.181 24 H 0.259 0.741 25 H 0.100 0.900 26 H 0.163 0.837 27 H 0.155 0.845 28 H 0.226 0.774 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.197 0.803 32 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.540 -10.064 1.360 12.079 hybrid contribution 0.618 2.254 -1.283 2.666 sum 7.158 -7.810 0.077 10.594 Atomic orbital electron populations 1.69671 1.08110 1.30440 1.31785 1.26398 0.94951 1.02648 0.91527 0.85987 0.81018 0.78825 0.79370 1.19015 1.19861 1.17631 1.20075 0.97795 0.88776 1.34018 0.86990 1.17934 0.89522 0.91781 0.87750 1.21730 0.96375 0.96056 0.99039 1.24954 1.03331 0.96995 1.08529 1.82780 1.17967 1.14060 1.64929 1.22522 1.04962 0.95671 1.31866 1.16842 0.84697 0.80900 0.77674 1.90666 1.53811 1.41483 1.58669 1.45967 1.22578 1.09843 1.62153 1.19402 0.88498 0.85817 0.98475 1.21332 1.07343 0.92241 0.92344 1.22122 1.04893 0.88502 0.98662 1.70518 1.18131 1.17824 1.14846 1.20285 1.03557 0.80512 0.88239 1.84927 1.33393 1.28347 1.77686 1.43762 1.49568 1.07682 1.17130 0.74095 0.90033 0.83713 0.84470 0.77431 0.91362 0.89249 0.80311 0.74370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.42 10.82 55.57 0.60 -17.82 16 2 C 0.07 1.59 5.39 -17.28 -0.09 1.50 16 3 Si 0.92 18.07 29.57 -169.99 -5.03 13.04 16 4 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.25 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.38 -9.91 8.52 -37.94 -0.32 -10.23 16 8 H 0.11 3.08 6.03 -52.48 -0.32 2.77 16 9 C 0.14 3.70 5.67 -106.21 -0.60 3.10 16 10 C -0.10 -2.39 9.04 -39.12 -0.35 -2.74 16 11 C -0.20 -4.40 11.07 28.86 0.32 -4.08 16 12 S -0.05 -1.11 22.25 -107.50 -2.39 -3.50 16 13 C -0.43 -10.69 6.51 -35.88 -0.23 -10.92 16 14 C 0.60 14.15 7.76 -13.05 -0.10 14.05 16 15 O -0.56 -14.71 14.45 5.13 0.07 -14.63 16 16 N -0.75 -13.83 5.54 -62.94 -0.35 -14.18 16 17 C 0.20 3.01 6.22 -5.20 -0.03 2.97 16 18 C -0.02 -0.23 6.61 -81.39 -0.54 -0.77 16 19 C 0.01 0.09 11.77 -17.79 -0.21 -0.12 16 20 N -0.48 -6.92 11.28 -14.72 -0.17 -7.09 16 21 C 0.38 4.58 9.49 -89.18 -0.85 3.74 16 22 O -0.44 -4.23 13.64 -18.23 -0.25 -4.48 16 23 N -0.56 -6.29 6.22 -10.26 -0.06 -6.35 16 24 H 0.42 3.70 8.96 -40.82 -0.37 3.33 16 25 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 26 H 0.15 3.44 6.41 -52.49 -0.34 3.11 16 27 H 0.14 2.51 8.06 -52.48 -0.42 2.08 16 28 H 0.39 6.97 7.54 -40.82 -0.31 6.66 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.18 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.40 1.58 9.06 45.56 0.41 1.99 16 LS Contribution 301.85 15.07 4.55 4.55 Total: -1.00 -31.44 301.85 -7.78 -39.21 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -1.74 Total: 14.76 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -3.01 Total: -3.50 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.02 Total: -45.44 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.17 Total: -19.12 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -2.39 Total: -3.50 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.44 -7.78 -39.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160386695.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.424 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds