Wall clock time and date at job start Tue Mar 31 2020 06:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86791 * 120.00263 * 2 1 4 4 H 1.48492 * 109.47231 * 274.98839 * 3 2 1 5 5 H 1.48504 * 109.46993 * 34.98731 * 3 2 1 6 6 H 1.48497 * 109.47310 * 154.98173 * 3 2 1 7 7 C 1.40311 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99683 * 189.78331 * 7 2 1 9 9 C 1.40537 * 120.00108 * 9.79498 * 7 2 1 10 10 C 1.44187 * 123.71867 * 23.63028 * 9 7 2 11 11 C 1.32766 * 114.43066 * 180.29461 * 10 9 7 12 12 S 1.75469 * 111.36357 * 359.73568 * 11 10 9 13 13 C 1.39550 * 123.71100 * 203.42852 * 9 7 2 14 14 C 1.46232 * 125.22956 * 359.97438 * 13 9 7 15 15 O 1.21763 * 120.00295 * 359.72808 * 14 13 9 16 16 N 1.34778 * 120.00160 * 179.72115 * 14 13 9 17 17 C 1.46497 * 120.00220 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47153 * 179.97438 * 17 16 14 19 19 C 1.34423 * 126.54221 * 264.68705 * 18 17 16 20 20 N 1.34362 * 108.26444 * 179.89794 * 19 18 17 21 21 C 1.31011 * 109.30123 * 0.37666 * 20 19 18 22 22 O 1.35511 * 125.76326 * 179.73625 * 21 20 19 23 23 N 1.35880 * 108.47662 * 359.76928 * 21 20 19 24 24 H 0.96995 * 126.48585 * 180.02562 * 23 21 20 25 25 H 0.96994 * 119.99938 * 359.97438 * 1 2 3 26 26 H 1.07998 * 122.78527 * 0.03182 * 10 9 7 27 27 H 1.08003 * 124.31980 * 179.77502 * 11 10 9 28 28 H 0.97000 * 119.99656 * 359.97438 * 16 14 13 29 29 H 1.09002 * 109.47359 * 300.00302 * 17 16 14 30 30 H 1.09000 * 109.46885 * 59.99998 * 17 16 14 31 31 H 1.07997 * 125.86629 * 359.97438 * 19 18 17 32 32 H 0.96700 * 113.99426 * 270.03842 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 2.3826 2.1072 -1.3947 5 1 1.4946 2.6199 0.8028 6 1 3.5867 1.4119 0.5921 7 6 2.0079 -1.2152 0.0005 8 1 3.0762 -1.2219 0.1595 9 6 1.3205 -2.4234 -0.2060 10 6 0.0553 -2.5175 -0.8910 11 6 -0.4324 -3.7494 -0.9768 12 16 0.6386 -4.9151 -0.2198 13 6 1.7894 -3.6648 0.2259 14 6 3.0432 -3.8897 0.9442 15 8 3.7723 -2.9501 1.2051 16 7 3.3916 -5.1370 1.3175 17 6 4.6474 -5.3622 2.0375 18 6 4.7987 -6.8315 2.3362 19 6 4.4546 -7.4562 3.4756 20 7 4.7462 -8.7613 3.3449 21 6 5.2695 -8.9718 2.1625 22 8 5.6895 -10.1679 1.6838 23 7 5.3207 -7.7880 1.4973 24 1 5.6607 -7.6448 0.6003 25 1 -0.4850 0.8400 0.0004 26 1 -0.4555 -1.6568 -1.2968 27 1 -1.3687 -4.0019 -1.4524 28 1 2.8106 -5.8854 1.1100 29 1 5.4835 -5.0279 1.4232 30 1 4.6360 -4.8011 2.9720 31 1 4.0175 -6.9895 4.3460 32 1 6.6168 -10.3644 1.8751 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160386695.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:00 Heat of formation + Delta-G solvation = -22.155583 kcal Electronic energy + Delta-G solvation = -19946.210629 eV Core-core repulsion = 16612.328790 eV Total energy + Delta-G solvation = -3333.881839 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.14122 -40.11878 -38.36993 -37.85968 -35.58252 -34.90517 -33.59375 -31.39093 -30.53760 -28.22258 -26.28325 -23.90008 -22.79287 -22.15537 -21.77965 -20.66408 -20.25248 -19.29538 -18.01836 -17.69577 -17.20661 -16.71781 -16.29948 -16.06540 -15.73845 -15.36725 -14.87865 -14.81895 -14.23149 -14.13418 -13.93731 -13.82065 -13.58330 -13.12092 -12.95771 -12.83754 -12.71620 -12.08685 -12.01402 -11.41502 -11.22243 -11.18004 -11.05884 -10.47297 -9.99196 -9.45252 -9.34607 -8.94776 -8.85220 -6.45269 0.30808 0.65478 1.35191 1.35982 1.37340 1.50904 1.52620 1.79026 1.86024 1.98206 2.18832 2.54422 2.71481 3.01330 3.32317 3.67691 4.03677 4.32067 4.36883 4.44285 4.55091 4.90804 5.01709 5.04808 5.28392 5.38665 5.47859 5.56794 5.65170 5.83449 5.91393 6.40267 6.57645 6.70678 6.74699 6.80362 6.92795 7.70604 8.08277 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.023569 B = 0.003854 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.702528 B = 7264.229050 C = 8153.903248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.035 3.965 3 Si 0.990 3.010 4 H -0.251 1.251 5 H -0.257 1.257 6 H -0.269 1.269 7 C -0.415 4.415 8 H 0.088 0.912 9 C 0.113 3.887 10 C -0.128 4.128 11 C -0.192 4.192 12 S 0.000 6.000 13 C -0.467 4.467 14 C 0.595 3.405 15 O -0.598 6.598 16 N -0.735 5.735 17 C 0.208 3.792 18 C -0.023 4.023 19 C 0.004 3.996 20 N -0.517 5.517 21 C 0.388 3.612 22 O -0.446 6.446 23 N -0.555 5.555 24 H 0.432 0.568 25 H 0.301 0.699 26 H 0.141 0.859 27 H 0.175 0.825 28 H 0.397 0.603 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.191 0.809 32 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.833 -9.561 0.252 11.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.181 1.181 6 H -0.193 1.193 7 C -0.445 4.445 8 H 0.106 0.894 9 C 0.102 3.898 10 C -0.160 4.160 11 C -0.326 4.326 12 S 0.255 5.745 13 C -0.585 4.585 14 C 0.392 3.608 15 O -0.484 6.484 16 N -0.388 5.388 17 C 0.084 3.916 18 C -0.138 4.138 19 C -0.144 4.144 20 N -0.248 5.248 21 C 0.086 3.914 22 O -0.250 6.250 23 N -0.173 5.173 24 H 0.273 0.727 25 H 0.112 0.888 26 H 0.159 0.841 27 H 0.192 0.808 28 H 0.231 0.769 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.208 0.792 32 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 6.431 -11.119 1.025 12.886 hybrid contribution 0.676 2.331 -1.172 2.695 sum 7.106 -8.788 -0.147 11.303 Atomic orbital electron populations 1.69655 1.08873 1.31951 1.31293 1.27076 0.95775 1.04938 0.90718 0.85053 0.78834 0.75037 0.80087 1.17486 1.18097 1.19343 1.20067 0.97038 0.90580 1.36856 0.89427 1.18375 0.90802 0.92444 0.88222 1.21641 0.96479 0.97083 1.00831 1.25432 1.04154 0.96239 1.06802 1.82429 1.16171 1.12011 1.63848 1.23024 1.06413 0.97003 1.32095 1.16929 0.84355 0.81934 0.77604 1.90635 1.54772 1.42966 1.59993 1.45774 1.23630 1.08226 1.61207 1.19415 0.86771 0.87393 0.98046 1.20887 1.08731 0.91375 0.92821 1.22387 1.04425 0.88460 0.99159 1.70527 1.19737 1.18247 1.16243 1.20365 1.02191 0.81139 0.87684 1.84885 1.35718 1.26940 1.77440 1.43660 1.49054 1.07061 1.17479 0.72748 0.88782 0.84140 0.80786 0.76857 0.90978 0.89218 0.79240 0.71303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.93 10.82 21.89 0.24 -37.69 16 2 C 0.04 1.70 5.39 85.37 0.46 2.16 16 3 Si 0.99 37.42 29.57 68.60 2.03 39.44 16 4 H -0.25 -8.82 7.11 99.48 0.71 -8.12 16 5 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.41 -22.75 8.52 23.34 0.20 -22.55 16 8 H 0.09 5.11 6.03 -2.91 -0.02 5.09 16 9 C 0.11 6.06 5.67 -20.89 -0.12 5.94 16 10 C -0.13 -6.16 9.04 22.61 0.20 -5.95 16 11 C -0.19 -7.97 11.07 66.64 0.74 -7.23 16 12 S 0.00 0.00 22.25 -56.49 -1.26 -1.26 16 13 C -0.47 -23.39 6.51 24.67 0.16 -23.23 16 14 C 0.60 28.52 7.76 86.32 0.67 29.19 16 15 O -0.60 -32.35 14.45 -4.55 -0.07 -32.41 16 16 N -0.74 -26.84 5.54 -471.22 -2.61 -29.45 16 17 C 0.21 6.04 6.22 85.63 0.53 6.57 16 18 C -0.02 -0.56 6.61 40.79 0.27 -0.29 16 19 C 0.00 0.11 11.77 83.43 0.98 1.09 16 20 N -0.52 -13.99 11.28 -314.07 -3.54 -17.53 16 21 C 0.39 8.66 9.49 179.84 1.71 10.37 16 22 O -0.45 -7.34 13.64 -88.14 -1.20 -8.54 16 23 N -0.55 -11.30 6.22 -297.41 -1.85 -13.15 16 24 H 0.43 6.70 8.96 -92.71 -0.83 5.87 16 25 H 0.30 12.63 8.29 -92.71 -0.77 11.86 16 26 H 0.14 6.76 6.41 -2.91 -0.02 6.74 16 27 H 0.17 5.79 8.06 -2.91 -0.02 5.77 16 28 H 0.40 13.68 7.54 -92.71 -0.70 12.98 16 29 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.19 4.16 8.06 -2.91 -0.02 4.13 16 32 H 0.43 2.11 9.06 -74.06 -0.67 1.43 16 Total: -1.00 -68.95 301.85 -3.43 -72.38 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: -0.97 Total: 32.16 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 5.80 Total: -3.95 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -7.77 Total: -97.83 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -1.27 Total: -40.95 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.44 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.26 Total: -1.26 kcal Total: -68.95 -3.43 -72.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160386695.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.226 kcal (2) G-P(sol) polarization free energy of solvation -68.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds