Wall clock time and date at job start Tue Mar 31 2020 06:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46865 * 2 1 4 4 C 1.50705 * 109.47154 * 240.00014 * 2 1 3 5 5 H 1.07996 * 120.00004 * 274.26941 * 4 2 1 6 6 C 1.37876 * 119.99913 * 93.99573 * 4 2 1 7 7 N 1.31511 * 120.00395 * 182.56767 * 6 4 2 8 8 Si 1.86806 * 119.99996 * 2.56913 * 6 4 2 9 9 H 1.48501 * 109.47263 * 85.08268 * 8 6 4 10 10 H 1.48496 * 109.47120 * 205.08331 * 8 6 4 11 11 H 1.48504 * 109.47015 * 325.08275 * 8 6 4 12 12 N 1.46499 * 109.47227 * 119.99916 * 2 1 3 13 13 C 1.34769 * 120.00425 * 274.99954 * 12 2 1 14 14 O 1.21681 * 119.99678 * 0.02562 * 13 12 2 15 15 C 1.46899 * 120.00376 * 179.97438 * 13 12 2 16 16 C 1.36344 * 127.15623 * 270.02302 * 15 13 12 17 17 Cl 1.73601 * 125.10440 * 359.96201 * 16 15 13 18 18 O 1.33834 * 109.79335 * 179.97438 * 16 15 13 19 19 C 1.34949 * 111.36295 * 0.02562 * 18 16 15 20 20 C 1.38934 * 133.06628 * 180.02562 * 19 18 16 21 21 C 1.37871 * 119.98032 * 179.97438 * 20 19 18 22 22 C 1.38659 * 120.65277 * 0.02562 * 21 20 19 23 23 C 1.37862 * 120.19131 * 359.97438 * 22 21 20 24 24 C 1.39101 * 119.63225 * 359.71609 * 23 22 21 25 25 H 1.08999 * 109.46961 * 183.79764 * 1 2 3 26 26 H 1.08999 * 109.47188 * 303.79948 * 1 2 3 27 27 H 1.08999 * 109.47350 * 63.79928 * 1 2 3 28 28 H 0.96999 * 120.00196 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99583 * 95.00028 * 12 2 1 30 30 H 1.08002 * 120.01189 * 359.94673 * 20 19 18 31 31 H 1.08011 * 119.67501 * 180.02562 * 21 20 19 32 32 H 1.07999 * 119.90729 * 179.97438 * 22 21 20 33 33 H 1.08004 * 120.18482 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1467 -1.7843 -1.2252 6 6 2.3406 0.0100 -2.3649 7 7 2.7307 -0.6142 -3.4547 8 14 2.2041 1.8731 -2.3540 9 1 3.4585 2.4582 -1.8161 10 1 1.9843 2.3614 -3.7390 11 1 1.0610 2.2806 -1.4981 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8573 1.1622 2.4119 15 6 2.6362 -0.7109 3.5567 16 6 1.8897 -1.3616 4.4938 17 17 0.1604 -1.5107 4.4652 18 8 2.6903 -1.8679 5.4393 19 6 3.9861 -1.5871 5.1883 20 6 5.1679 -1.8850 5.8554 21 6 6.3742 -1.4536 5.3460 22 6 6.4235 -0.7214 4.1695 23 6 5.2613 -0.4163 3.4936 24 6 4.0393 -0.8520 3.9953 25 1 -0.3633 -1.0254 0.0681 26 1 -0.3633 0.5717 0.8540 27 1 -0.3634 0.4537 -0.9220 28 1 2.9472 -0.1074 -4.2529 29 1 2.2490 -1.6317 1.1525 30 1 5.1415 -2.4539 6.7731 31 1 7.2899 -1.6883 5.8684 32 1 7.3750 -0.3893 3.7814 33 1 5.2998 0.1537 2.5770 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160774322.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:57 Heat of formation + Delta-G solvation = -9.965481 kcal Electronic energy + Delta-G solvation = -20591.964275 eV Core-core repulsion = 17224.274581 eV Total energy + Delta-G solvation = -3367.689694 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.70196 -38.89794 -38.10939 -37.15377 -34.94265 -33.10068 -32.29724 -30.64124 -29.95428 -29.09505 -25.34443 -23.97858 -23.27001 -22.46272 -20.58604 -19.60426 -18.21412 -17.86029 -16.80194 -16.64865 -16.19959 -15.51131 -15.44748 -14.51420 -14.26458 -14.16313 -13.88100 -13.22782 -13.02097 -12.76257 -12.55101 -12.39330 -12.25273 -12.13351 -11.62669 -11.48898 -11.19093 -11.06621 -10.88515 -10.60881 -10.17098 -9.91258 -9.45910 -9.22640 -8.84071 -8.76059 -8.31313 -8.19356 -6.25891 -4.30125 0.59606 0.83858 1.12698 1.86366 2.93584 3.01054 3.24327 3.32274 3.39516 3.51092 3.81008 4.29931 4.47951 4.74511 4.75559 4.89276 5.09070 5.14629 5.19155 5.36560 5.57295 5.82413 6.00279 6.15157 6.25696 6.29542 6.34374 6.50611 6.64064 6.81084 6.87976 7.13537 7.31157 7.47108 8.06488 8.48485 8.72863 8.83127 9.35243 10.85665 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.016466 B = 0.005335 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.032949 B = 5246.888088 C = 6372.795568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.231 3.769 3 H 0.051 0.949 4 C -0.530 4.530 5 H 0.080 0.920 6 C 0.083 3.917 7 N -0.888 5.888 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.259 1.259 12 N -0.686 5.686 13 C 0.573 3.427 14 O -0.540 6.540 15 C -0.168 4.168 16 C 0.097 3.903 17 Cl 0.048 6.952 18 O -0.181 6.181 19 C 0.063 3.937 20 C -0.106 4.106 21 C -0.089 4.089 22 C -0.130 4.130 23 C -0.058 4.058 24 C -0.098 4.098 25 H 0.046 0.954 26 H 0.030 0.970 27 H 0.056 0.944 28 H 0.268 0.732 29 H 0.396 0.604 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.076 -3.491 17.682 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.129 3.871 3 H 0.069 0.931 4 C -0.568 4.568 5 H 0.098 0.902 6 C -0.122 4.122 7 N -0.524 5.524 8 Si 0.699 3.301 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.184 1.184 12 N -0.334 5.334 13 C 0.356 3.644 14 O -0.419 6.419 15 C -0.174 4.174 16 C 0.022 3.978 17 Cl 0.077 6.923 18 O -0.083 6.083 19 C 0.016 3.984 20 C -0.124 4.124 21 C -0.107 4.107 22 C -0.148 4.148 23 C -0.076 4.076 24 C -0.100 4.100 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.230 0.770 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.664 -2.788 17.684 18.274 hybrid contribution -0.203 0.439 -0.181 0.516 sum 3.461 -2.349 17.503 17.996 Atomic orbital electron populations 1.22239 0.98345 1.00320 0.99890 1.19192 0.91100 0.94320 0.82462 0.93101 1.20982 1.45516 0.95838 0.94507 0.90207 1.24914 0.93511 0.98577 0.95210 1.69872 1.44036 1.36269 1.02193 0.86928 0.79951 0.85792 0.77467 1.19805 1.21100 1.18356 1.46663 1.63568 1.13990 1.09190 1.17091 0.78594 0.86409 0.82289 1.90799 1.51113 1.15115 1.84858 1.20952 0.91818 1.05378 0.99273 1.22339 0.86028 0.99498 0.89982 1.98476 0.99826 1.96656 1.97310 1.83681 1.15374 1.64680 1.44552 1.19430 0.82321 1.00368 0.96306 1.19923 0.87598 1.03774 1.01111 1.20962 0.96577 0.97146 0.95991 1.21103 0.98205 0.99753 0.95708 1.20668 0.89789 0.97401 0.99736 1.19389 0.92388 1.02122 0.96077 0.93442 0.95095 0.92482 0.92188 0.77008 0.84685 0.84388 0.84724 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.44 37.16 0.35 -2.90 16 2 C 0.23 5.48 2.16 -69.08 -0.15 5.33 16 3 H 0.05 1.31 4.89 -51.93 -0.25 1.05 16 4 C -0.53 -14.08 9.05 -34.44 -0.31 -14.39 16 5 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -25.80 13.96 55.43 0.77 -25.02 16 8 Si 0.87 21.25 26.74 -169.99 -4.55 16.71 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.26 -6.21 6.87 56.52 0.39 -5.82 16 12 N -0.69 -14.21 5.06 -56.17 -0.28 -14.50 16 13 C 0.57 11.73 7.44 -12.76 -0.09 11.63 16 14 O -0.54 -12.84 16.77 5.21 0.09 -12.75 16 15 C -0.17 -2.92 6.06 -103.22 -0.63 -3.55 16 16 C 0.10 1.51 7.91 30.05 0.24 1.74 16 17 Cl 0.05 0.67 29.06 -51.86 -1.51 -0.84 16 18 O -0.18 -2.60 10.53 5.15 0.05 -2.55 16 19 C 0.06 0.86 7.38 -38.58 -0.28 0.57 16 20 C -0.11 -1.09 10.06 -39.46 -0.40 -1.48 16 21 C -0.09 -0.79 10.01 -39.56 -0.40 -1.19 16 22 C -0.13 -1.35 10.04 -39.56 -0.40 -1.74 16 23 C -0.06 -0.79 10.09 -39.40 -0.40 -1.19 16 24 C -0.10 -1.52 6.39 -104.98 -0.67 -2.19 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 1.25 7.92 -51.93 -0.41 0.84 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.40 7.45 8.57 -40.82 -0.35 7.10 16 30 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 32 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.14 1.91 8.06 -52.48 -0.42 1.48 16 LS Contribution 310.98 15.07 4.69 4.69 Total: -1.00 -31.22 310.98 -7.09 -38.31 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.12 Total: 3.14 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -3.23 Total: -7.18 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.49 Total: -39.52 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.14 Total: -15.30 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.55 Total: 16.71 kcal Atomic # 17 Polarization: 0.67 SS G_CDS: -1.51 Total: -0.84 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.22 -7.09 -38.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160774322.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.349 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds