Wall clock time and date at job start Tue Mar 31 2020 06:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46865 * 2 1 4 4 C 1.50705 * 109.47154 * 240.00014 * 2 1 3 5 5 H 1.07996 * 120.00004 * 274.26941 * 4 2 1 6 6 C 1.37876 * 119.99913 * 93.99573 * 4 2 1 7 7 N 1.31511 * 120.00395 * 182.56767 * 6 4 2 8 8 Si 1.86806 * 119.99996 * 2.56913 * 6 4 2 9 9 H 1.48501 * 109.47263 * 85.08268 * 8 6 4 10 10 H 1.48496 * 109.47120 * 205.08331 * 8 6 4 11 11 H 1.48504 * 109.47015 * 325.08275 * 8 6 4 12 12 N 1.46499 * 109.47227 * 119.99916 * 2 1 3 13 13 C 1.34769 * 120.00425 * 274.99954 * 12 2 1 14 14 O 1.21681 * 119.99678 * 0.02562 * 13 12 2 15 15 C 1.46899 * 120.00376 * 179.97438 * 13 12 2 16 16 C 1.36344 * 127.15623 * 270.02302 * 15 13 12 17 17 Cl 1.73601 * 125.10440 * 359.96201 * 16 15 13 18 18 O 1.33834 * 109.79335 * 179.97438 * 16 15 13 19 19 C 1.34949 * 111.36295 * 0.02562 * 18 16 15 20 20 C 1.38934 * 133.06628 * 180.02562 * 19 18 16 21 21 C 1.37871 * 119.98032 * 179.97438 * 20 19 18 22 22 C 1.38659 * 120.65277 * 0.02562 * 21 20 19 23 23 C 1.37862 * 120.19131 * 359.97438 * 22 21 20 24 24 C 1.39101 * 119.63225 * 359.71609 * 23 22 21 25 25 H 1.08999 * 109.46961 * 183.79764 * 1 2 3 26 26 H 1.08999 * 109.47188 * 303.79948 * 1 2 3 27 27 H 1.08999 * 109.47350 * 63.79928 * 1 2 3 28 28 H 0.96999 * 120.00196 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99583 * 95.00028 * 12 2 1 30 30 H 1.08002 * 120.01189 * 359.94673 * 20 19 18 31 31 H 1.08011 * 119.67501 * 180.02562 * 21 20 19 32 32 H 1.07999 * 119.90729 * 179.97438 * 22 21 20 33 33 H 1.08004 * 120.18482 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1467 -1.7843 -1.2252 6 6 2.3406 0.0100 -2.3649 7 7 2.7307 -0.6142 -3.4547 8 14 2.2041 1.8731 -2.3540 9 1 3.4585 2.4582 -1.8161 10 1 1.9843 2.3614 -3.7390 11 1 1.0610 2.2806 -1.4981 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8573 1.1622 2.4119 15 6 2.6362 -0.7109 3.5567 16 6 1.8897 -1.3616 4.4938 17 17 0.1604 -1.5107 4.4652 18 8 2.6903 -1.8679 5.4393 19 6 3.9861 -1.5871 5.1883 20 6 5.1679 -1.8850 5.8554 21 6 6.3742 -1.4536 5.3460 22 6 6.4235 -0.7214 4.1695 23 6 5.2613 -0.4163 3.4936 24 6 4.0393 -0.8520 3.9953 25 1 -0.3633 -1.0254 0.0681 26 1 -0.3633 0.5717 0.8540 27 1 -0.3634 0.4537 -0.9220 28 1 2.9472 -0.1074 -4.2529 29 1 2.2490 -1.6317 1.1525 30 1 5.1415 -2.4539 6.7731 31 1 7.2899 -1.6883 5.8684 32 1 7.3750 -0.3893 3.7814 33 1 5.2998 0.1537 2.5770 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160774322.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:56 Heat of formation + Delta-G solvation = -30.030059 kcal Electronic energy + Delta-G solvation = -20592.834340 eV Core-core repulsion = 17224.274581 eV Total energy + Delta-G solvation = -3368.559759 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.78405 -40.58814 -39.03607 -38.29180 -36.81063 -34.55699 -34.06529 -31.73655 -31.41687 -30.27777 -27.35459 -25.33904 -24.36651 -23.42424 -22.27048 -21.24233 -19.68011 -18.88792 -18.51659 -17.85178 -17.32032 -17.25348 -16.85496 -15.91937 -15.72851 -15.40767 -15.05066 -14.78978 -14.56698 -14.35225 -14.14493 -13.77167 -13.32216 -13.19994 -13.14983 -13.08312 -12.85001 -12.61989 -12.46973 -12.04249 -11.89292 -11.35339 -11.24965 -11.09650 -10.87841 -9.98862 -9.77402 -9.36178 -8.40294 -6.47519 -0.43647 -0.31097 0.20130 0.76889 1.27990 1.33393 1.36179 1.44166 1.92282 2.25423 2.28502 2.62213 2.99643 3.42183 3.57600 3.70638 3.98679 4.17746 4.23642 4.38848 4.41468 4.53568 4.70628 4.77478 4.90798 5.03285 5.10360 5.27888 5.29933 5.37340 5.41470 5.42468 5.59511 5.89122 6.06420 6.55408 6.69941 7.11646 7.24735 8.74522 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.016466 B = 0.005335 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.032949 B = 5246.888088 C = 6372.795568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.235 3.765 3 H 0.033 0.967 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.037 3.963 7 N -0.927 5.927 8 Si 0.923 3.077 9 H -0.274 1.274 10 H -0.275 1.275 11 H -0.254 1.254 12 N -0.685 5.685 13 C 0.582 3.418 14 O -0.578 6.578 15 C -0.200 4.200 16 C 0.106 3.894 17 Cl 0.059 6.941 18 O -0.176 6.176 19 C 0.046 3.954 20 C -0.098 4.098 21 C -0.073 4.073 22 C -0.116 4.116 23 C -0.092 4.092 24 C -0.124 4.124 25 H 0.060 0.940 26 H 0.037 0.963 27 H 0.054 0.946 28 H 0.272 0.728 29 H 0.405 0.595 30 H 0.170 0.830 31 H 0.186 0.814 32 H 0.163 0.837 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.439 -3.851 20.046 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.131 3.869 3 H 0.051 0.949 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.164 4.164 7 N -0.565 5.565 8 Si 0.747 3.253 9 H -0.199 1.199 10 H -0.200 1.200 11 H -0.178 1.178 12 N -0.332 5.332 13 C 0.367 3.633 14 O -0.459 6.459 15 C -0.206 4.206 16 C 0.030 3.970 17 Cl 0.088 6.912 18 O -0.078 6.078 19 C 0.000 4.000 20 C -0.116 4.116 21 C -0.091 4.091 22 C -0.134 4.134 23 C -0.110 4.110 24 C -0.126 4.126 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.240 0.760 30 H 0.187 0.813 31 H 0.203 0.797 32 H 0.181 0.819 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.030 -3.173 20.066 20.928 hybrid contribution -0.515 0.461 -0.817 1.070 sum 4.515 -2.712 19.248 19.956 Atomic orbital electron populations 1.22137 0.96661 1.01315 1.00060 1.18992 0.92311 0.93115 0.82439 0.94903 1.21113 1.44865 0.94938 0.95631 0.92502 1.25557 0.93516 1.02332 0.94966 1.69964 1.45769 1.37855 1.02950 0.86114 0.79932 0.81308 0.77909 1.19935 1.20018 1.17758 1.46425 1.63698 1.14317 1.08808 1.17345 0.77282 0.85850 0.82798 1.90760 1.52667 1.16834 1.85618 1.20658 0.93672 1.07411 0.98866 1.22329 0.86545 0.98561 0.89604 1.98475 0.98861 1.96546 1.97295 1.83686 1.15846 1.64404 1.43874 1.19921 0.82718 1.00999 0.96372 1.20501 0.86452 1.02896 1.01706 1.21540 0.97800 0.94819 0.94908 1.21519 0.97969 0.98295 0.95572 1.20755 0.90773 0.99149 1.00302 1.19535 0.91872 1.03771 0.97402 0.92127 0.94406 0.92703 0.91902 0.76009 0.81294 0.79703 0.81916 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.19 9.44 71.98 0.68 -5.51 16 2 C 0.23 11.25 2.16 44.25 0.10 11.35 16 3 H 0.03 1.71 4.89 -2.39 -0.01 1.70 16 4 C -0.53 -28.55 9.05 25.60 0.23 -28.32 16 5 H 0.06 3.28 8.06 -2.91 -0.02 3.26 16 6 C 0.04 2.08 5.47 84.65 0.46 2.54 16 7 N -0.93 -54.83 13.96 21.45 0.30 -54.53 16 8 Si 0.92 44.14 26.74 68.60 1.83 45.97 16 9 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.25 -11.81 6.87 99.48 0.68 -11.12 16 12 N -0.68 -28.96 5.06 -449.86 -2.28 -31.24 16 13 C 0.58 24.38 7.44 86.51 0.64 25.02 16 14 O -0.58 -28.13 16.77 -4.29 -0.07 -28.20 16 15 C -0.20 -7.06 6.06 -18.96 -0.11 -7.17 16 16 C 0.11 3.26 7.91 67.38 0.53 3.79 16 17 Cl 0.06 1.61 29.06 -2.72 -0.08 1.53 16 18 O -0.18 -4.86 10.53 -4.50 -0.05 -4.91 16 19 C 0.05 1.19 7.38 22.92 0.17 1.35 16 20 C -0.10 -1.62 10.06 22.35 0.22 -1.40 16 21 C -0.07 -0.96 10.01 22.28 0.22 -0.74 16 22 C -0.12 -2.07 10.04 22.28 0.22 -1.84 16 23 C -0.09 -2.49 10.09 22.39 0.23 -2.26 16 24 C -0.12 -3.84 6.39 -20.09 -0.13 -3.96 16 25 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 2.37 7.92 -2.39 -0.02 2.35 16 28 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.40 15.65 8.57 -92.71 -0.79 14.85 16 30 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 31 H 0.19 0.79 8.06 -2.91 -0.02 0.76 16 32 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.12 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -69.21 310.98 3.47 -65.74 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.34 Total: 12.78 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 3.47 Total: -7.14 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -1.98 Total: -85.76 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.12 Total: -33.12 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.83 Total: 45.97 kcal Atomic # 17 Polarization: 1.61 SS G_CDS: -0.08 Total: 1.53 kcal Total: -69.21 3.47 -65.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160774322.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.707 kcal (2) G-P(sol) polarization free energy of solvation -69.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds