Wall clock time and date at job start Tue Mar 31 2020 06:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.47244 * 2 1 4 4 C 1.34863 * 116.99809 * 180.02562 * 3 2 1 5 5 O 1.21525 * 120.00263 * 359.97438 * 4 3 2 6 6 C 1.47569 * 119.99718 * 180.02562 * 4 3 2 7 7 N 1.31113 * 118.71853 * 359.97438 * 6 4 3 8 8 C 1.33860 * 121.20459 * 179.97438 * 7 6 4 9 9 N 1.34304 * 120.39010 * 180.02562 * 8 7 6 10 10 C 1.31794 * 119.99865 * 0.02562 * 9 8 7 11 11 H 1.07999 * 120.00232 * 359.97438 * 10 9 8 12 12 C 1.41105 * 119.99546 * 180.02562 * 10 9 8 13 13 N 1.30448 * 120.00654 * 359.71918 * 12 10 9 14 14 Si 1.86809 * 119.99858 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47087 * 89.99656 * 14 12 10 16 16 H 1.48497 * 109.47017 * 209.99805 * 14 12 10 17 17 H 1.48500 * 109.46668 * 329.99771 * 14 12 10 18 18 C 1.46653 * 119.21717 * 0.28187 * 8 7 6 19 19 S 1.75778 * 131.60285 * 180.32476 * 18 8 7 20 20 C 1.75640 * 91.29791 * 179.50421 * 19 18 8 21 21 C 1.33174 * 110.35273 * 359.80060 * 20 19 18 22 22 C 1.38834 * 118.81541 * 359.42147 * 18 8 7 23 23 N 1.36778 * 118.71565 * 179.97438 * 6 4 3 24 24 H 0.96994 * 119.63846 * 359.97415 * 23 6 4 25 25 H 1.08998 * 109.47259 * 59.99527 * 1 2 3 26 26 H 1.08997 * 109.47327 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46684 * 300.00261 * 1 2 3 28 28 H 1.09001 * 109.46684 * 239.99739 * 2 1 3 29 29 H 1.08998 * 109.47259 * 120.00473 * 2 1 3 30 30 H 0.97001 * 120.00663 * 179.97438 * 13 12 10 31 31 H 1.08004 * 124.81982 * 179.78137 * 20 19 18 32 32 H 1.08001 * 122.07589 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3511 1.5456 -0.0005 5 8 4.0913 0.5818 -0.0005 6 6 3.9151 2.9092 0.0000 7 7 3.0934 3.9309 0.0005 8 6 3.5509 5.1889 0.0015 9 7 2.6944 6.2233 0.0025 10 6 1.3950 6.0030 0.0030 11 1 1.0189 4.9906 0.0022 12 6 0.4951 7.0899 0.0035 13 7 0.9492 8.3127 0.0090 14 14 -1.3467 6.7776 0.0035 15 1 -1.8346 6.6942 1.4036 16 1 -2.0374 7.8906 -0.6960 17 1 -1.6320 5.4997 -0.6971 18 6 4.9984 5.4242 -0.0042 19 16 5.9396 6.9087 0.0027 20 6 7.4439 6.0022 0.0027 21 6 7.1961 4.6937 0.0022 22 6 5.8541 4.3309 0.0017 23 7 5.2748 3.0580 0.0000 24 1 5.8433 2.2721 0.0000 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.3306 9.0599 0.0090 31 1 8.4298 6.4433 0.0029 32 1 7.9886 3.9599 0.0025 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181749.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:36 Heat of formation + Delta-G solvation = -15.265308 kcal Electronic energy + Delta-G solvation = -20419.573404 eV Core-core repulsion = 17085.990350 eV Total energy + Delta-G solvation = -3333.583054 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.83557 -38.67990 -36.09086 -35.92413 -34.77988 -33.17219 -31.51502 -30.70257 -28.88409 -25.41190 -25.01931 -23.26964 -22.33553 -20.68459 -19.84310 -18.07301 -17.67943 -17.16831 -16.48998 -16.08133 -16.04129 -15.75953 -14.65351 -14.13876 -14.06903 -13.48451 -13.27097 -13.26160 -12.88301 -12.63638 -12.41259 -12.12904 -12.08787 -11.69459 -11.32526 -11.29837 -11.22474 -10.87414 -10.74583 -10.11635 -10.09458 -10.03604 -9.85884 -9.04529 -8.51441 -8.01006 -7.93152 -7.81867 -7.07374 -4.25247 1.63394 1.75536 2.48383 2.63430 2.63846 2.74299 2.92341 3.12335 3.24143 3.33945 3.47867 4.25182 4.55897 5.14031 5.16811 5.28675 5.45901 5.46894 5.67470 5.75356 5.80282 5.96374 6.04846 6.13645 6.25253 6.32579 6.59475 6.84545 6.94004 7.00045 7.17247 7.38432 7.84946 8.16715 8.36594 8.74069 9.03837 9.45573 9.89047 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.008640 B = 0.008409 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.948605 B = 3329.062981 C = 6548.563556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.336 6.336 4 C 0.534 3.466 5 O -0.547 6.547 6 C 0.174 3.826 7 N -0.370 5.370 8 C 0.011 3.989 9 N -0.322 5.322 10 C -0.091 4.091 11 H 0.099 0.901 12 C 0.047 3.953 13 N -0.673 5.673 14 Si 0.947 3.053 15 H -0.254 1.254 16 H -0.263 1.263 17 H -0.243 1.243 18 C -0.114 4.114 19 S 0.154 5.846 20 C -0.271 4.271 21 C -0.126 4.126 22 C 0.091 3.909 23 N -0.677 5.677 24 H 0.398 0.602 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.305 0.695 31 H 0.156 0.844 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 -3.631 -0.007 4.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.251 6.251 4 C 0.382 3.618 5 O -0.438 6.438 6 C -0.082 4.082 7 N -0.093 5.093 8 C -0.232 4.232 9 N -0.037 5.037 10 C -0.271 4.271 11 H 0.116 0.884 12 C -0.188 4.188 13 N -0.293 5.293 14 Si 0.766 3.234 15 H -0.178 1.178 16 H -0.187 1.187 17 H -0.166 1.166 18 C -0.240 4.240 19 S 0.416 5.584 20 C -0.408 4.408 21 C -0.161 4.161 22 C -0.015 4.015 23 N -0.314 5.314 24 H 0.232 0.768 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.173 0.827 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.751 -1.287 -0.003 3.037 hybrid contribution 0.649 -2.647 -0.001 2.725 sum -2.102 -3.934 -0.003 4.460 Atomic orbital electron populations 1.21772 0.93010 1.02241 1.03737 1.22904 0.95080 0.81273 1.01933 1.86704 1.23524 1.30445 1.84401 1.20143 0.80325 0.87898 0.73435 1.90743 1.60481 1.42154 1.50457 1.18475 0.80931 0.89417 1.19377 1.67660 1.36065 0.99549 1.06011 1.17997 0.87229 0.85027 1.32984 1.68113 1.04036 1.30461 1.01089 1.21673 0.89791 0.94747 1.20889 0.88372 1.27232 1.04955 0.93882 0.92738 1.69567 1.40885 1.00557 1.18313 0.85587 0.76042 0.80941 0.80828 1.17764 1.18721 1.16619 1.23591 0.96675 0.94402 1.09308 1.83768 0.94582 1.07562 1.72499 1.24914 1.01761 0.96848 1.17263 1.19002 0.93706 0.95956 1.07421 1.17495 0.91133 0.84894 1.07942 1.40303 1.03152 1.04281 1.83712 0.76799 0.91448 0.90776 0.91452 0.91787 0.91784 0.88347 0.82680 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.29 37.16 0.38 -1.38 16 2 C 0.06 0.94 6.20 37.16 0.23 1.17 16 3 O -0.34 -6.77 9.99 -40.94 -0.41 -7.18 16 4 C 0.53 11.84 7.96 34.54 0.27 12.12 16 5 O -0.55 -12.09 16.14 -19.28 -0.31 -12.40 16 6 C 0.17 4.25 7.66 -154.77 -1.19 3.06 16 7 N -0.37 -9.72 8.67 -8.86 -0.08 -9.80 16 8 C 0.01 0.31 7.56 -155.08 -1.17 -0.86 16 9 N -0.32 -8.69 10.04 -10.47 -0.11 -8.79 16 10 C -0.09 -2.23 9.58 -16.48 -0.16 -2.39 16 11 H 0.10 2.41 6.95 -52.49 -0.36 2.04 16 12 C 0.05 0.98 5.54 -17.05 -0.09 0.89 16 13 N -0.67 -14.55 13.58 55.62 0.76 -13.80 16 14 Si 0.95 14.95 29.57 -169.99 -5.03 9.92 16 15 H -0.25 -3.91 7.11 56.52 0.40 -3.51 16 16 H -0.26 -3.88 7.11 56.52 0.40 -3.48 16 17 H -0.24 -3.87 7.11 56.52 0.40 -3.47 16 18 C -0.11 -2.82 6.72 -35.97 -0.24 -3.06 16 19 S 0.15 3.17 23.30 -107.50 -2.51 0.67 16 20 C -0.27 -4.80 11.16 28.97 0.32 -4.48 16 21 C -0.13 -2.39 10.13 -41.06 -0.42 -2.81 16 22 C 0.09 2.07 7.09 -83.69 -0.59 1.48 16 23 N -0.68 -15.41 5.46 -8.51 -0.05 -15.46 16 24 H 0.40 8.18 8.16 -40.82 -0.33 7.84 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.30 5.51 8.29 -40.82 -0.34 5.17 16 31 H 0.16 2.18 8.06 -52.48 -0.42 1.76 16 32 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -30.02 308.19 -8.52 -38.54 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -2.79 Total: 9.91 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -2.65 Total: 3.74 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.53 Total: -47.85 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.72 Total: -19.58 kcal Atomic # 14 Polarization: 14.95 SS G_CDS: -5.03 Total: 9.92 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -2.51 Total: 0.67 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.02 -8.52 -38.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181749.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.275 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds