Wall clock time and date at job start Tue Mar 31 2020 06:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.47244 * 2 1 4 4 C 1.34863 * 116.99809 * 180.02562 * 3 2 1 5 5 O 1.21525 * 120.00263 * 359.97438 * 4 3 2 6 6 C 1.47569 * 119.99718 * 180.02562 * 4 3 2 7 7 N 1.31113 * 118.71853 * 359.97438 * 6 4 3 8 8 C 1.33860 * 121.20459 * 179.97438 * 7 6 4 9 9 N 1.34304 * 120.39010 * 180.02562 * 8 7 6 10 10 C 1.31794 * 119.99865 * 0.02562 * 9 8 7 11 11 H 1.07999 * 120.00232 * 359.97438 * 10 9 8 12 12 C 1.41105 * 119.99546 * 180.02562 * 10 9 8 13 13 N 1.30448 * 120.00654 * 359.71918 * 12 10 9 14 14 Si 1.86809 * 119.99858 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47087 * 89.99656 * 14 12 10 16 16 H 1.48497 * 109.47017 * 209.99805 * 14 12 10 17 17 H 1.48500 * 109.46668 * 329.99771 * 14 12 10 18 18 C 1.46653 * 119.21717 * 0.28187 * 8 7 6 19 19 S 1.75778 * 131.60285 * 180.32476 * 18 8 7 20 20 C 1.75640 * 91.29791 * 179.50421 * 19 18 8 21 21 C 1.33174 * 110.35273 * 359.80060 * 20 19 18 22 22 C 1.38834 * 118.81541 * 359.42147 * 18 8 7 23 23 N 1.36778 * 118.71565 * 179.97438 * 6 4 3 24 24 H 0.96994 * 119.63846 * 359.97415 * 23 6 4 25 25 H 1.08998 * 109.47259 * 59.99527 * 1 2 3 26 26 H 1.08997 * 109.47327 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46684 * 300.00261 * 1 2 3 28 28 H 1.09001 * 109.46684 * 239.99739 * 2 1 3 29 29 H 1.08998 * 109.47259 * 120.00473 * 2 1 3 30 30 H 0.97001 * 120.00663 * 179.97438 * 13 12 10 31 31 H 1.08004 * 124.81982 * 179.78137 * 20 19 18 32 32 H 1.08001 * 122.07589 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3511 1.5456 -0.0005 5 8 4.0913 0.5818 -0.0005 6 6 3.9151 2.9092 0.0000 7 7 3.0934 3.9309 0.0005 8 6 3.5509 5.1889 0.0015 9 7 2.6944 6.2233 0.0025 10 6 1.3950 6.0030 0.0030 11 1 1.0189 4.9906 0.0022 12 6 0.4951 7.0899 0.0035 13 7 0.9492 8.3127 0.0090 14 14 -1.3467 6.7776 0.0035 15 1 -1.8346 6.6942 1.4036 16 1 -2.0374 7.8906 -0.6960 17 1 -1.6320 5.4997 -0.6971 18 6 4.9984 5.4242 -0.0042 19 16 5.9396 6.9087 0.0027 20 6 7.4439 6.0022 0.0027 21 6 7.1961 4.6937 0.0022 22 6 5.8541 4.3309 0.0017 23 7 5.2748 3.0580 0.0000 24 1 5.8433 2.2721 0.0000 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.3306 9.0599 0.0090 31 1 8.4298 6.4433 0.0029 32 1 7.9886 3.9599 0.0025 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163181749.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:35 Heat of formation + Delta-G solvation = -33.626242 kcal Electronic energy + Delta-G solvation = -20420.369594 eV Core-core repulsion = 17085.990350 eV Total energy + Delta-G solvation = -3334.379244 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52339 -40.36496 -37.81809 -37.53782 -36.46312 -34.89413 -32.87158 -32.31574 -30.54255 -27.14334 -26.70074 -24.80858 -23.66067 -22.37671 -21.45871 -19.81781 -19.41910 -18.81521 -18.20119 -17.72514 -17.54290 -17.36178 -16.21831 -15.67085 -15.64618 -15.18421 -14.79144 -14.76152 -14.32281 -14.04333 -13.77601 -13.69160 -13.56631 -13.06096 -12.81321 -12.80640 -12.46639 -12.35089 -12.07965 -11.79605 -11.61614 -11.48207 -11.42646 -10.89601 -10.28159 -9.89967 -9.58477 -9.40207 -8.76666 -6.07107 -0.09616 0.14587 0.88094 1.20454 1.29356 1.36206 1.53764 1.55396 1.74386 1.83744 2.05515 2.52819 2.91895 3.58674 3.60161 4.03152 4.11036 4.12894 4.25969 4.34447 4.42147 4.58150 4.73917 4.84449 4.93875 5.02096 5.13219 5.25551 5.39177 5.41972 5.46418 5.57213 6.07125 6.39499 6.67441 7.04869 7.47879 7.65759 8.06577 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.008640 B = 0.008409 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.948605 B = 3329.062981 C = 6548.563556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 O -0.349 6.349 4 C 0.539 3.461 5 O -0.549 6.549 6 C 0.156 3.844 7 N -0.394 5.394 8 C -0.030 4.030 9 N -0.352 5.352 10 C -0.111 4.111 11 H 0.088 0.912 12 C 0.014 3.986 13 N -0.705 5.705 14 Si 1.021 2.979 15 H -0.244 1.244 16 H -0.239 1.239 17 H -0.249 1.249 18 C -0.180 4.180 19 S 0.144 5.856 20 C -0.225 4.225 21 C -0.138 4.138 22 C 0.091 3.909 23 N -0.675 5.675 24 H 0.407 0.593 25 H 0.063 0.937 26 H 0.111 0.889 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.323 0.677 31 H 0.205 0.795 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.866 -4.069 -0.002 4.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.264 6.264 4 C 0.387 3.613 5 O -0.442 6.442 6 C -0.101 4.101 7 N -0.117 5.117 8 C -0.273 4.273 9 N -0.067 5.067 10 C -0.292 4.292 11 H 0.105 0.895 12 C -0.217 4.217 13 N -0.325 5.325 14 Si 0.834 3.166 15 H -0.168 1.168 16 H -0.162 1.162 17 H -0.172 1.172 18 C -0.305 4.305 19 S 0.406 5.594 20 C -0.361 4.361 21 C -0.171 4.171 22 C -0.016 4.016 23 N -0.313 5.313 24 H 0.242 0.758 25 H 0.082 0.918 26 H 0.129 0.871 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.136 0.864 31 H 0.222 0.778 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.583 -1.723 0.002 3.105 hybrid contribution 0.761 -2.559 0.000 2.670 sum -1.822 -4.282 0.002 4.654 Atomic orbital electron populations 1.21820 0.90257 1.04524 1.03448 1.23385 0.97240 0.78897 1.02684 1.86696 1.22218 1.33756 1.83779 1.19912 0.81132 0.87077 0.73194 1.90718 1.60803 1.41949 1.50709 1.18983 0.81725 0.90168 1.19198 1.67573 1.37063 0.99994 1.07076 1.18414 0.88654 0.85341 1.34889 1.68155 1.04973 1.31092 1.02491 1.22064 0.89958 0.95727 1.21418 0.89499 1.28279 1.09043 0.92751 0.91650 1.69518 1.43435 1.01670 1.17926 0.84614 0.69462 0.81162 0.81344 1.16779 1.16166 1.17163 1.23732 0.96528 0.96634 1.13636 1.83653 0.95931 1.07056 1.72783 1.25552 1.02295 0.95970 1.12283 1.19355 0.92793 0.97345 1.07584 1.18119 0.92629 0.84385 1.06502 1.40348 1.02896 1.04904 1.83129 0.75774 0.91765 0.87101 0.91714 0.91039 0.91015 0.86366 0.77797 0.81773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 10.29 71.98 0.74 -2.39 16 2 C 0.05 1.50 6.20 71.98 0.45 1.95 16 3 O -0.35 -14.32 9.99 -57.76 -0.58 -14.90 16 4 C 0.54 24.37 7.96 70.28 0.56 24.92 16 5 O -0.55 -24.26 16.14 19.75 0.32 -23.94 16 6 C 0.16 7.87 7.66 136.44 1.05 8.92 16 7 N -0.39 -21.81 8.67 -181.94 -1.58 -23.38 16 8 C -0.03 -1.72 7.56 136.14 1.03 -0.69 16 9 N -0.35 -20.11 10.04 -187.03 -1.88 -21.99 16 10 C -0.11 -5.77 9.58 85.40 0.82 -4.95 16 11 H 0.09 4.55 6.95 -2.91 -0.02 4.53 16 12 C 0.01 0.60 5.54 85.60 0.47 1.07 16 13 N -0.70 -31.02 13.58 22.05 0.30 -30.72 16 14 Si 1.02 30.13 29.57 68.60 2.03 32.16 16 15 H -0.24 -6.81 7.11 99.48 0.71 -6.11 16 16 H -0.24 -6.10 7.11 99.48 0.71 -5.39 16 17 H -0.25 -7.45 7.11 99.48 0.71 -6.74 16 18 C -0.18 -9.18 6.72 24.61 0.17 -9.01 16 19 S 0.14 5.92 23.30 -56.49 -1.32 4.61 16 20 C -0.22 -7.20 11.16 66.68 0.74 -6.46 16 21 C -0.14 -4.85 10.13 21.32 0.22 -4.63 16 22 C 0.09 4.14 7.09 38.19 0.27 4.41 16 23 N -0.68 -31.12 5.46 -180.83 -0.99 -32.11 16 24 H 0.41 16.64 8.16 -92.71 -0.76 15.89 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.32 11.62 8.29 -92.71 -0.77 10.85 16 31 H 0.21 4.54 8.06 -2.91 -0.02 4.52 16 32 H 0.16 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -69.97 308.19 3.25 -66.72 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.43 Total: 30.41 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 6.51 Total: 13.14 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -4.14 Total: -108.21 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.26 Total: -38.84 kcal Atomic # 14 Polarization: 30.13 SS G_CDS: 2.03 Total: 32.16 kcal Atomic # 16 Polarization: 5.92 SS G_CDS: -1.32 Total: 4.61 kcal Total: -69.97 3.25 -66.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181749.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.094 kcal (2) G-P(sol) polarization free energy of solvation -69.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds