Wall clock time and date at job start Tue Mar 31 2020 06:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45191 * 109.47165 * 2 1 4 4 C 1.34884 * 117.00307 * 180.02562 * 3 2 1 5 5 O 1.21611 * 119.99648 * 359.97438 * 4 3 2 6 6 C 1.46629 * 120.00318 * 180.02562 * 4 3 2 7 7 C 1.34064 * 124.67931 * 179.97438 * 6 4 3 8 8 C 1.39736 * 115.50323 * 179.73569 * 7 6 4 9 9 C 1.40283 * 112.77901 * 359.97438 * 8 7 6 10 10 N 1.33713 * 119.21223 * 180.02562 * 9 8 7 11 11 C 1.31411 * 121.09561 * 0.02562 * 10 9 8 12 12 N 1.31968 * 122.23404 * 359.97438 * 11 10 9 13 13 C 1.32535 * 121.30337 * 0.02562 * 12 11 10 14 14 N 1.37928 * 120.54404 * 179.97438 * 13 12 11 15 15 C 1.36842 * 120.00007 * 0.02612 * 14 13 12 16 16 H 1.08005 * 119.99750 * 359.97438 * 15 14 13 17 17 C 1.38904 * 120.00030 * 180.02562 * 15 14 13 18 18 N 1.31492 * 119.99738 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00064 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46558 * 90.00414 * 19 17 15 21 21 H 1.48498 * 109.47249 * 210.00324 * 19 17 15 22 22 H 1.48494 * 109.47398 * 330.00450 * 19 17 15 23 23 S 1.75540 * 124.67979 * 359.69315 * 6 4 3 24 24 H 1.08997 * 109.46540 * 299.99842 * 1 2 3 25 25 H 1.08995 * 109.47051 * 59.99997 * 1 2 3 26 26 H 1.09000 * 109.46856 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47056 * 239.99780 * 2 1 3 28 28 H 1.09000 * 109.47064 * 120.00477 * 2 1 3 29 29 H 1.08001 * 122.24404 * 359.71204 * 7 6 4 30 30 H 1.07998 * 118.87940 * 180.02562 * 11 10 9 31 31 H 0.96998 * 120.00266 * 180.02562 * 14 13 12 32 32 H 0.97004 * 119.99584 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3512 1.5457 -0.0005 5 8 4.0920 0.5812 -0.0005 6 6 3.9117 2.9006 0.0000 7 6 5.2220 3.1841 0.0000 8 6 5.5434 4.5440 -0.0052 9 6 4.4096 5.3700 -0.0102 10 7 4.5693 6.6976 -0.0161 11 6 5.7676 7.2369 -0.0178 12 7 6.8677 6.5079 -0.0133 13 6 6.8161 5.1836 -0.0073 14 7 7.9758 4.4370 -0.0032 15 6 9.1926 5.0630 -0.0048 16 1 9.2449 6.1418 -0.0096 17 6 10.3606 4.3111 -0.0012 18 7 11.5298 4.9128 -0.0032 19 14 10.2702 2.4454 0.0064 20 1 10.2470 1.9453 -1.3917 21 1 11.4570 1.8952 0.7093 22 1 9.0349 2.0124 0.7076 23 16 2.9595 4.3753 -0.0064 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 5.9784 2.4131 0.0042 30 1 5.8551 8.3134 -0.0221 31 1 7.9289 3.4681 0.0007 32 1 12.3454 4.3877 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182178.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:31 Heat of formation + Delta-G solvation = -19.163961 kcal Electronic energy + Delta-G solvation = -20070.010667 eV Core-core repulsion = 16736.258555 eV Total energy + Delta-G solvation = -3333.752112 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.31237 -39.96109 -36.67438 -36.38193 -35.36765 -33.04571 -31.89523 -31.34029 -29.29139 -25.75329 -25.35546 -23.38753 -22.54965 -21.81762 -20.11161 -19.36455 -18.24834 -17.65528 -16.84221 -16.49267 -15.67575 -15.44425 -15.01774 -14.70526 -14.56614 -14.06806 -13.76086 -13.59102 -13.49525 -12.89727 -12.78302 -12.39901 -12.36917 -12.07628 -11.71617 -11.53275 -11.23326 -11.11381 -10.75827 -10.61581 -10.56137 -10.39360 -10.08613 -9.79790 -8.97306 -8.30801 -8.26629 -7.38527 -7.10991 -4.29736 0.60595 1.65997 1.97801 2.20707 2.27897 2.71291 2.72400 2.75436 2.79806 3.18698 3.51634 3.95002 4.29280 4.79639 4.79877 4.80538 4.92910 5.00864 5.13689 5.27788 5.39736 5.54544 5.62076 5.63442 5.80066 5.98129 6.17259 6.39762 6.52110 6.72685 6.90284 7.49922 7.73582 7.89782 7.97512 8.47553 8.57178 9.18560 9.95138 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.016695 B = 0.004946 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.732521 B = 5659.827585 C = 7316.109900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.356 6.356 4 C 0.548 3.452 5 O -0.518 6.518 6 C -0.305 4.305 7 C 0.023 3.977 8 C -0.283 4.283 9 C 0.168 3.832 10 N -0.594 5.594 11 C 0.363 3.637 12 N -0.574 5.574 13 C 0.379 3.621 14 N -0.488 5.488 15 C -0.276 4.276 16 H 0.145 0.855 17 C 0.048 3.952 18 N -0.819 5.819 19 Si 0.877 3.123 20 H -0.257 1.257 21 H -0.261 1.261 22 H -0.260 1.260 23 S 0.175 5.825 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.136 0.864 30 H 0.188 0.812 31 H 0.392 0.608 32 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.554 -6.322 -0.011 14.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.273 6.273 4 C 0.395 3.605 5 O -0.409 6.409 6 C -0.423 4.423 7 C -0.010 4.010 8 C -0.301 4.301 9 C -0.087 4.087 10 N -0.325 5.325 11 C 0.068 3.932 12 N -0.302 5.302 13 C 0.125 3.875 14 N -0.088 5.088 15 C -0.408 4.408 16 H 0.162 0.838 17 C -0.165 4.165 18 N -0.450 5.450 19 Si 0.700 3.300 20 H -0.181 1.181 21 H -0.185 1.185 22 H -0.185 1.185 23 S 0.431 5.569 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.154 0.846 30 H 0.204 0.796 31 H 0.229 0.771 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.103 -5.477 -0.017 15.129 hybrid contribution 1.754 -2.601 0.034 3.138 sum -12.348 -8.079 0.017 14.756 Atomic orbital electron populations 1.21801 0.92681 1.02770 1.03638 1.22980 0.95208 0.80277 1.02548 1.86585 1.23811 1.32034 1.84894 1.19637 0.80285 0.88073 0.72535 1.90844 1.60379 1.41647 1.48029 1.21736 0.96777 0.94239 1.29575 1.19625 0.94613 0.95009 0.91765 1.18524 0.94887 0.93289 1.23401 1.23750 0.96076 0.94588 0.94318 1.67969 1.27118 1.08407 1.28961 1.24359 0.81639 0.99691 0.87550 1.67657 1.32571 1.04210 1.25728 1.17672 0.83170 0.88216 0.98465 1.41375 1.04487 1.07484 1.55440 1.20106 0.79770 0.96953 1.43999 0.83784 1.25346 0.94828 1.00329 0.95948 1.69634 0.97977 1.37775 1.39587 0.86621 0.80094 0.82853 0.80415 1.18136 1.18521 1.18475 1.83807 1.03395 0.92316 1.77372 0.91418 0.91409 0.90371 0.91306 0.91310 0.84598 0.79573 0.77110 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 37.16 0.38 -0.81 16 2 C 0.06 0.71 6.20 37.16 0.23 0.94 16 3 O -0.36 -5.19 10.03 -41.00 -0.41 -5.60 16 4 C 0.55 9.39 7.93 34.12 0.27 9.66 16 5 O -0.52 -9.79 16.52 -19.35 -0.32 -10.11 16 6 C -0.30 -5.40 6.32 -37.67 -0.24 -5.64 16 7 C 0.02 0.43 9.44 -40.49 -0.38 0.05 16 8 C -0.28 -5.77 5.91 -106.95 -0.63 -6.40 16 9 C 0.17 3.29 7.71 -15.96 -0.12 3.17 16 10 N -0.59 -11.67 10.46 -13.20 -0.14 -11.81 16 11 C 0.36 6.90 12.26 -92.33 -1.13 5.77 16 12 N -0.57 -12.50 9.18 -13.36 -0.12 -12.62 16 13 C 0.38 8.30 7.53 -154.66 -1.17 7.14 16 14 N -0.49 -10.69 5.20 -10.54 -0.05 -10.74 16 15 C -0.28 -6.64 10.19 -15.07 -0.15 -6.80 16 16 H 0.14 3.81 7.33 -52.48 -0.38 3.43 16 17 C 0.05 1.12 5.50 -17.45 -0.10 1.03 16 18 N -0.82 -20.12 13.96 55.49 0.77 -19.34 16 19 Si 0.88 16.95 27.73 -169.99 -4.71 12.23 16 20 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 21 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 22 H -0.26 -4.80 6.52 56.52 0.37 -4.43 16 23 S 0.18 2.91 23.05 -107.50 -2.48 0.43 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.14 2.43 7.44 -52.49 -0.39 2.04 16 30 H 0.19 2.76 8.06 -52.49 -0.42 2.34 16 31 H 0.39 7.87 4.95 -40.82 -0.20 7.67 16 32 H 0.29 6.48 8.31 -40.82 -0.34 6.14 16 LS Contribution 302.94 15.07 4.57 4.57 Total: -1.00 -27.31 302.94 -8.62 -35.93 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -2.68 Total: 8.97 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -3.04 Total: 8.10 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.46 Total: -54.51 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.73 Total: -15.71 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -4.71 Total: 12.23 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -2.48 Total: 0.43 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.31 -8.62 -35.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182178.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.765 kcal (2) G-P(sol) polarization free energy of solvation -27.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds