Wall clock time and date at job start Tue Mar 31 2020 06:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45191 * 109.47165 * 2 1 4 4 C 1.34884 * 117.00307 * 180.02562 * 3 2 1 5 5 O 1.21611 * 119.99648 * 359.97438 * 4 3 2 6 6 C 1.46629 * 120.00318 * 180.02562 * 4 3 2 7 7 C 1.34064 * 124.67931 * 179.97438 * 6 4 3 8 8 C 1.39736 * 115.50323 * 179.73569 * 7 6 4 9 9 C 1.40283 * 112.77901 * 359.97438 * 8 7 6 10 10 N 1.33713 * 119.21223 * 180.02562 * 9 8 7 11 11 C 1.31411 * 121.09561 * 0.02562 * 10 9 8 12 12 N 1.31968 * 122.23404 * 359.97438 * 11 10 9 13 13 C 1.32535 * 121.30337 * 0.02562 * 12 11 10 14 14 N 1.37928 * 120.54404 * 179.97438 * 13 12 11 15 15 C 1.36842 * 120.00007 * 0.02612 * 14 13 12 16 16 H 1.08005 * 119.99750 * 359.97438 * 15 14 13 17 17 C 1.38904 * 120.00030 * 180.02562 * 15 14 13 18 18 N 1.31492 * 119.99738 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00064 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46558 * 90.00414 * 19 17 15 21 21 H 1.48498 * 109.47249 * 210.00324 * 19 17 15 22 22 H 1.48494 * 109.47398 * 330.00450 * 19 17 15 23 23 S 1.75540 * 124.67979 * 359.69315 * 6 4 3 24 24 H 1.08997 * 109.46540 * 299.99842 * 1 2 3 25 25 H 1.08995 * 109.47051 * 59.99997 * 1 2 3 26 26 H 1.09000 * 109.46856 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47056 * 239.99780 * 2 1 3 28 28 H 1.09000 * 109.47064 * 120.00477 * 2 1 3 29 29 H 1.08001 * 122.24404 * 359.71204 * 7 6 4 30 30 H 1.07998 * 118.87940 * 180.02562 * 11 10 9 31 31 H 0.96998 * 120.00266 * 180.02562 * 14 13 12 32 32 H 0.97004 * 119.99584 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3512 1.5457 -0.0005 5 8 4.0920 0.5812 -0.0005 6 6 3.9117 2.9006 0.0000 7 6 5.2220 3.1841 0.0000 8 6 5.5434 4.5440 -0.0052 9 6 4.4096 5.3700 -0.0102 10 7 4.5693 6.6976 -0.0161 11 6 5.7676 7.2369 -0.0178 12 7 6.8677 6.5079 -0.0133 13 6 6.8161 5.1836 -0.0073 14 7 7.9758 4.4370 -0.0032 15 6 9.1926 5.0630 -0.0048 16 1 9.2449 6.1418 -0.0096 17 6 10.3606 4.3111 -0.0012 18 7 11.5298 4.9128 -0.0032 19 14 10.2702 2.4454 0.0064 20 1 10.2470 1.9453 -1.3917 21 1 11.4570 1.8952 0.7093 22 1 9.0349 2.0124 0.7076 23 16 2.9595 4.3753 -0.0064 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 5.9784 2.4131 0.0042 30 1 5.8551 8.3134 -0.0221 31 1 7.9289 3.4681 0.0007 32 1 12.3454 4.3877 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182178.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:30 Heat of formation + Delta-G solvation = -33.687351 kcal Electronic energy + Delta-G solvation = -20070.640449 eV Core-core repulsion = 16736.258555 eV Total energy + Delta-G solvation = -3334.381894 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.84886 -41.35029 -38.02509 -37.95356 -36.88668 -34.69644 -33.08180 -32.63880 -30.81228 -27.39518 -26.81051 -24.64211 -24.01527 -23.08094 -21.60465 -20.93879 -19.75639 -19.12776 -18.29908 -17.64857 -17.12952 -16.96204 -16.58516 -16.23314 -16.12597 -15.28105 -15.16777 -15.10275 -14.79601 -14.34821 -13.96212 -13.87844 -13.58268 -13.19668 -12.91285 -12.77172 -12.69643 -12.54756 -12.19092 -12.17005 -11.82585 -11.67558 -11.55235 -11.41992 -10.59815 -9.88106 -9.82190 -8.90859 -8.76375 -6.10462 -0.88229 0.17295 0.33863 0.70884 0.77617 1.19799 1.25857 1.26785 1.51260 1.74202 1.96304 2.35765 2.64275 3.14818 3.50928 3.56186 3.74368 3.90226 4.01769 4.02470 4.08806 4.35400 4.47737 4.59929 4.81152 4.93319 4.94844 5.10688 5.12804 5.32703 5.36944 5.84360 6.06779 6.29733 6.56413 6.82570 6.88416 7.58836 8.35340 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.016695 B = 0.004946 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.732521 B = 5659.827585 C = 7316.109900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.354 6.354 4 C 0.552 3.448 5 O -0.533 6.533 6 C -0.295 4.295 7 C 0.012 3.988 8 C -0.290 4.290 9 C 0.133 3.867 10 N -0.591 5.591 11 C 0.367 3.633 12 N -0.610 5.610 13 C 0.396 3.604 14 N -0.504 5.504 15 C -0.304 4.304 16 H 0.104 0.896 17 C 0.010 3.990 18 N -0.878 5.878 19 Si 0.936 3.064 20 H -0.252 1.252 21 H -0.257 1.257 22 H -0.247 1.247 23 S 0.253 5.747 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.144 0.856 30 H 0.226 0.774 31 H 0.399 0.601 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.435 -8.096 0.017 19.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 O -0.271 6.271 4 C 0.398 3.602 5 O -0.426 6.426 6 C -0.413 4.413 7 C -0.022 4.022 8 C -0.308 4.308 9 C -0.120 4.120 10 N -0.321 5.321 11 C 0.073 3.927 12 N -0.340 5.340 13 C 0.141 3.859 14 N -0.109 5.109 15 C -0.435 4.435 16 H 0.122 0.878 17 C -0.197 4.197 18 N -0.512 5.512 19 Si 0.756 3.244 20 H -0.176 1.176 21 H -0.181 1.181 22 H -0.171 1.171 23 S 0.511 5.489 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.122 0.878 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.162 0.838 30 H 0.242 0.758 31 H 0.237 0.763 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.105 -7.238 0.012 19.498 hybrid contribution 2.298 -2.054 0.021 3.083 sum -15.807 -9.292 0.033 18.336 Atomic orbital electron populations 1.21840 0.89948 1.04579 1.03876 1.23410 0.97294 0.78367 1.02948 1.86580 1.21921 1.34517 1.84068 1.19526 0.81185 0.87364 0.72100 1.90848 1.61130 1.42111 1.48478 1.22151 0.97032 0.95787 1.26337 1.19701 0.95465 0.94552 0.92456 1.18672 0.94513 0.94281 1.23344 1.24306 0.97700 0.94888 0.95063 1.68101 1.27202 1.08463 1.28292 1.25174 0.80906 1.01224 0.85356 1.67787 1.34025 1.04584 1.27619 1.18168 0.83942 0.88733 0.95063 1.41138 1.03667 1.07548 1.58540 1.19619 0.81177 0.95436 1.47299 0.87778 1.25963 0.94006 1.04490 0.95271 1.69726 0.98672 1.39370 1.43397 0.85740 0.80543 0.77515 0.80637 1.17633 1.18128 1.17071 1.83620 1.00351 0.89749 1.75176 0.91168 0.91156 0.87790 0.90968 0.90980 0.83827 0.75844 0.76324 0.89705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.29 71.98 0.74 -0.97 16 2 C 0.05 0.99 6.20 71.98 0.45 1.44 16 3 O -0.35 -9.04 10.03 -57.98 -0.58 -9.62 16 4 C 0.55 17.14 7.93 70.01 0.56 17.70 16 5 O -0.53 -18.70 16.52 19.47 0.32 -18.38 16 6 C -0.29 -9.53 6.32 23.51 0.15 -9.39 16 7 C 0.01 0.41 9.44 21.68 0.20 0.61 16 8 C -0.29 -11.43 5.91 -21.37 -0.13 -11.56 16 9 C 0.13 4.93 7.71 84.90 0.65 5.59 16 10 N -0.59 -21.97 10.46 -195.68 -2.05 -24.01 16 11 C 0.37 13.53 12.26 180.95 2.22 15.74 16 12 N -0.61 -26.87 9.18 -196.19 -1.80 -28.67 16 13 C 0.40 17.45 7.53 134.22 1.01 18.46 16 14 N -0.50 -22.67 5.20 -187.26 -0.97 -23.65 16 15 C -0.30 -15.50 10.19 84.07 0.86 -14.65 16 16 H 0.10 5.99 7.33 -2.91 -0.02 5.97 16 17 C 0.01 0.47 5.50 84.90 0.47 0.94 16 18 N -0.88 -46.00 13.96 21.66 0.30 -45.70 16 19 Si 0.94 35.72 27.73 68.60 1.90 37.62 16 20 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 21 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 22 H -0.25 -8.69 6.52 99.48 0.65 -8.04 16 23 S 0.25 7.49 23.05 -56.49 -1.30 6.18 16 24 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 29 H 0.14 4.87 7.44 -2.91 -0.02 4.85 16 30 H 0.23 6.20 8.06 -2.91 -0.02 6.17 16 31 H 0.40 16.12 4.95 -92.71 -0.46 15.66 16 32 H 0.29 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -60.70 302.94 3.67 -57.03 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.67 Total: 25.27 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 7.18 Total: 23.92 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -4.52 Total: -122.03 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.26 Total: -28.00 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 1.90 Total: 37.62 kcal Atomic # 16 Polarization: 7.49 SS G_CDS: -1.30 Total: 6.18 kcal Total: -60.70 3.67 -57.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182178.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.345 kcal (2) G-P(sol) polarization free energy of solvation -60.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds