Wall clock time and date at job start Tue Mar 31 2020 06:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34875 * 117.00287 * 2 1 4 4 O 1.21602 * 119.99641 * 359.97438 * 3 2 1 5 5 C 1.46632 * 120.00131 * 180.02562 * 3 2 1 6 6 S 1.75536 * 124.68329 * 0.02562 * 5 3 2 7 7 C 1.75846 * 91.59828 * 179.97438 * 6 5 3 8 8 N 1.33757 * 131.30996 * 179.97438 * 7 6 5 9 9 C 1.31370 * 121.09409 * 180.02562 * 8 7 6 10 10 N 1.31998 * 122.23885 * 359.73945 * 9 8 7 11 11 C 1.32510 * 121.29848 * 0.53018 * 10 9 8 12 12 N 1.37937 * 120.54348 * 179.76163 * 11 10 9 13 13 C 1.36837 * 120.00233 * 354.18217 * 12 11 10 14 14 H 1.08004 * 119.99766 * 0.02562 * 13 12 11 15 15 C 1.38905 * 120.00213 * 179.72530 * 13 12 11 16 16 N 1.31488 * 119.99592 * 0.27289 * 15 13 12 17 17 Si 1.86799 * 119.99985 * 180.27631 * 15 13 12 18 18 H 1.48503 * 109.47357 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46983 * 119.99880 * 17 15 13 20 20 H 1.48498 * 109.46942 * 239.99735 * 17 15 13 21 21 C 1.40250 * 109.47824 * 0.02562 * 7 6 5 22 22 C 1.34062 * 124.68131 * 179.97438 * 5 3 2 23 23 C 1.50702 * 122.24937 * 359.97438 * 22 5 3 24 24 H 1.09006 * 109.47228 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46925 * 300.00156 * 1 2 3 26 26 H 1.08993 * 109.47327 * 60.00343 * 1 2 3 27 27 H 1.08001 * 118.88319 * 179.97438 * 9 8 7 28 28 H 0.97000 * 119.99403 * 174.18417 * 12 11 10 29 29 H 0.96998 * 119.99266 * 180.02562 * 16 15 13 30 30 H 1.09001 * 109.47441 * 262.63912 * 23 22 5 31 31 H 1.09001 * 109.46620 * 22.64284 * 23 22 5 32 32 H 1.09003 * 109.46991 * 142.64134 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2215 -0.0005 5 6 3.5287 1.2784 -0.0006 6 16 4.6017 -0.1108 -0.0019 7 6 6.0228 0.9249 -0.0026 8 7 7.3281 0.6329 -0.0033 9 6 8.2357 1.5827 -0.0033 10 7 7.9151 2.8631 -0.0076 11 6 6.6495 3.2558 -0.0018 12 7 6.3321 4.5982 -0.0016 13 6 7.3225 5.5355 0.1128 14 1 8.3528 5.2242 0.2025 15 6 7.0034 6.8873 0.1073 16 7 5.7491 7.2663 -0.0024 17 14 8.3562 8.1669 0.2557 18 1 9.6715 7.4863 0.3650 19 1 8.3483 9.0374 -0.9474 20 1 8.1241 8.9943 1.4668 21 6 5.6220 2.2689 -0.0012 22 6 4.2328 2.4192 -0.0011 23 6 3.5705 3.7730 -0.0018 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 9.2798 1.3065 -0.0034 28 1 5.4067 4.8777 -0.0825 29 1 5.5263 8.2103 -0.0066 30 1 3.5291 4.1568 -1.0211 31 1 2.5589 3.6827 0.3939 32 1 4.1447 4.4586 0.6215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182324.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:30 Heat of formation + Delta-G solvation = -14.143385 kcal Electronic energy + Delta-G solvation = -20661.894121 eV Core-core repulsion = 17328.359717 eV Total energy + Delta-G solvation = -3333.534404 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.34574 -39.82540 -36.76804 -36.29843 -35.47877 -32.95144 -31.14955 -29.58876 -28.84527 -27.16788 -25.45750 -24.05924 -22.81627 -21.58083 -19.35913 -18.52448 -18.29031 -17.52158 -16.67060 -16.15676 -15.67042 -15.35132 -15.05526 -14.51821 -14.42041 -13.98585 -13.63116 -13.34892 -13.20394 -12.63254 -12.47035 -12.16194 -12.12386 -11.98379 -11.69225 -11.34027 -11.02450 -10.84397 -10.66837 -10.66242 -10.49921 -10.17342 -9.70000 -9.65203 -8.81367 -8.18314 -8.11280 -7.21924 -7.20116 -4.29379 0.75990 1.79820 2.09972 2.32003 2.42146 2.91411 2.92081 2.93232 2.98932 3.28108 3.63356 4.33742 4.36216 4.87602 5.07436 5.13536 5.15908 5.21872 5.33047 5.50664 5.57896 5.75343 5.83891 6.03412 6.08782 6.26679 6.37790 6.71554 6.81317 6.89213 6.98868 7.39392 7.81738 8.03803 8.15009 8.61551 8.70850 9.32176 9.90303 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.019332 B = 0.005131 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.045397 B = 5455.368001 C = 6879.954918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.359 6.359 3 C 0.548 3.452 4 O -0.513 6.513 5 C -0.319 4.319 6 S 0.163 5.837 7 C 0.170 3.830 8 N -0.598 5.598 9 C 0.360 3.640 10 N -0.583 5.583 11 C 0.368 3.632 12 N -0.466 5.466 13 C -0.278 4.278 14 H 0.129 0.871 15 C 0.025 3.975 16 N -0.853 5.853 17 Si 0.950 3.050 18 H -0.257 1.257 19 H -0.272 1.272 20 H -0.272 1.272 21 C -0.281 4.281 22 C 0.065 3.935 23 C -0.136 4.136 24 H 0.098 0.902 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.185 0.815 28 H 0.416 0.584 29 H 0.290 0.710 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.595 -6.975 0.079 8.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.276 6.276 3 C 0.395 3.605 4 O -0.405 6.405 5 C -0.437 4.437 6 S 0.420 5.580 7 C -0.084 4.084 8 N -0.329 5.329 9 C 0.064 3.936 10 N -0.312 5.312 11 C 0.113 3.887 12 N -0.068 5.068 13 C -0.410 4.410 14 H 0.147 0.853 15 C -0.185 4.185 16 N -0.485 5.485 17 Si 0.774 3.226 18 H -0.181 1.181 19 H -0.198 1.198 20 H -0.198 1.198 21 C -0.299 4.299 22 C 0.050 3.950 23 C -0.194 4.194 24 H 0.116 0.884 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.202 0.798 28 H 0.260 0.740 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.247 -7.840 0.074 8.917 hybrid contribution -0.631 2.539 -0.011 2.616 sum -4.878 -5.301 0.063 7.204 Atomic orbital electron populations 1.23187 0.76565 1.03266 1.02422 1.86591 1.23039 1.32850 1.85128 1.19655 0.87085 0.81216 0.72527 1.90746 1.65996 1.35325 1.48401 1.21459 0.92755 0.97452 1.32026 1.83700 0.91144 1.04983 1.78192 1.23696 0.97112 0.93502 0.94110 1.67958 0.98150 1.37296 1.29506 1.24275 0.98413 0.83004 0.87880 1.67618 1.17734 1.19340 1.26511 1.17882 0.87815 0.84207 0.98813 1.41847 1.11671 1.01590 1.51742 1.20552 0.91666 0.85505 1.43324 0.85295 1.25822 0.98391 0.99011 0.95253 1.69643 1.17705 1.19754 1.41406 0.85456 0.79745 0.78824 0.78591 1.18094 1.19760 1.19765 1.18421 0.92816 0.94983 1.23683 1.18515 0.91172 0.95282 0.90056 1.21280 1.03242 0.91749 1.03163 0.88359 0.92052 0.92042 0.79850 0.73951 0.89946 0.90119 0.87600 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.57 101.05 1.07 1.50 16 2 O -0.36 -5.46 10.38 -40.97 -0.43 -5.89 16 3 C 0.55 9.79 7.91 34.12 0.27 10.06 16 4 O -0.51 -9.76 13.59 -19.34 -0.26 -10.02 16 5 C -0.32 -6.07 6.32 -37.67 -0.24 -6.31 16 6 S 0.16 2.91 23.05 -107.50 -2.48 0.43 16 7 C 0.17 3.56 7.71 -15.96 -0.12 3.43 16 8 N -0.60 -12.28 10.46 -13.20 -0.14 -12.42 16 9 C 0.36 7.06 12.26 -92.34 -1.13 5.93 16 10 N -0.58 -13.00 9.19 -13.36 -0.12 -13.13 16 11 C 0.37 8.53 7.53 -154.66 -1.16 7.36 16 12 N -0.47 -10.98 5.21 -10.54 -0.05 -11.03 16 13 C -0.28 -6.62 9.71 -15.07 -0.15 -6.77 16 14 H 0.13 3.08 7.12 -52.48 -0.37 2.70 16 15 C 0.03 0.57 5.50 -17.45 -0.10 0.47 16 16 N -0.85 -19.96 13.05 55.49 0.72 -19.24 16 17 Si 0.95 17.61 29.55 -169.99 -5.02 12.59 16 18 H -0.26 -4.72 7.11 56.52 0.40 -4.31 16 19 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 20 H -0.27 -5.01 7.11 56.52 0.40 -4.60 16 21 C -0.28 -6.16 5.88 -106.95 -0.63 -6.79 16 22 C 0.06 1.32 5.85 -105.53 -0.62 0.70 16 23 C -0.14 -2.63 8.27 36.01 0.30 -2.33 16 24 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.18 2.78 8.06 -52.49 -0.42 2.36 16 28 H 0.42 9.58 3.82 -40.82 -0.16 9.42 16 29 H 0.29 6.26 8.31 -40.82 -0.34 5.93 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.11 2.02 5.29 -51.93 -0.27 1.74 16 32 H 0.07 1.50 5.81 -51.93 -0.30 1.20 16 LS Contribution 294.28 15.07 4.43 4.43 Total: -1.00 -27.12 294.28 -8.21 -35.33 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -2.35 Total: 11.69 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -2.51 Total: 7.26 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.41 Total: -55.82 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.69 Total: -15.91 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.02 Total: 12.59 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -2.48 Total: 0.43 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.12 -8.21 -35.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182324.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.188 kcal (2) G-P(sol) polarization free energy of solvation -27.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds