Wall clock time and date at job start Tue Mar 31 2020 06:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34875 * 117.00287 * 2 1 4 4 O 1.21602 * 119.99641 * 359.97438 * 3 2 1 5 5 C 1.46632 * 120.00131 * 180.02562 * 3 2 1 6 6 S 1.75536 * 124.68329 * 0.02562 * 5 3 2 7 7 C 1.75846 * 91.59828 * 179.97438 * 6 5 3 8 8 N 1.33757 * 131.30996 * 179.97438 * 7 6 5 9 9 C 1.31370 * 121.09409 * 180.02562 * 8 7 6 10 10 N 1.31998 * 122.23885 * 359.73945 * 9 8 7 11 11 C 1.32510 * 121.29848 * 0.53018 * 10 9 8 12 12 N 1.37937 * 120.54348 * 179.76163 * 11 10 9 13 13 C 1.36837 * 120.00233 * 354.18217 * 12 11 10 14 14 H 1.08004 * 119.99766 * 0.02562 * 13 12 11 15 15 C 1.38905 * 120.00213 * 179.72530 * 13 12 11 16 16 N 1.31488 * 119.99592 * 0.27289 * 15 13 12 17 17 Si 1.86799 * 119.99985 * 180.27631 * 15 13 12 18 18 H 1.48503 * 109.47357 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46983 * 119.99880 * 17 15 13 20 20 H 1.48498 * 109.46942 * 239.99735 * 17 15 13 21 21 C 1.40250 * 109.47824 * 0.02562 * 7 6 5 22 22 C 1.34062 * 124.68131 * 179.97438 * 5 3 2 23 23 C 1.50702 * 122.24937 * 359.97438 * 22 5 3 24 24 H 1.09006 * 109.47228 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46925 * 300.00156 * 1 2 3 26 26 H 1.08993 * 109.47327 * 60.00343 * 1 2 3 27 27 H 1.08001 * 118.88319 * 179.97438 * 9 8 7 28 28 H 0.97000 * 119.99403 * 174.18417 * 12 11 10 29 29 H 0.96998 * 119.99266 * 180.02562 * 16 15 13 30 30 H 1.09001 * 109.47441 * 262.63912 * 23 22 5 31 31 H 1.09001 * 109.46620 * 22.64284 * 23 22 5 32 32 H 1.09003 * 109.46991 * 142.64134 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2215 -0.0005 5 6 3.5287 1.2784 -0.0006 6 16 4.6017 -0.1108 -0.0019 7 6 6.0228 0.9249 -0.0026 8 7 7.3281 0.6329 -0.0033 9 6 8.2357 1.5827 -0.0033 10 7 7.9151 2.8631 -0.0076 11 6 6.6495 3.2558 -0.0018 12 7 6.3321 4.5982 -0.0016 13 6 7.3225 5.5355 0.1128 14 1 8.3528 5.2242 0.2025 15 6 7.0034 6.8873 0.1073 16 7 5.7491 7.2663 -0.0024 17 14 8.3562 8.1669 0.2557 18 1 9.6715 7.4863 0.3650 19 1 8.3483 9.0374 -0.9474 20 1 8.1241 8.9943 1.4668 21 6 5.6220 2.2689 -0.0012 22 6 4.2328 2.4192 -0.0011 23 6 3.5705 3.7730 -0.0018 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 9.2798 1.3065 -0.0034 28 1 5.4067 4.8777 -0.0825 29 1 5.5263 8.2103 -0.0066 30 1 3.5291 4.1568 -1.0211 31 1 2.5589 3.6827 0.3939 32 1 4.1447 4.4586 0.6215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182324.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:29 Heat of formation + Delta-G solvation = -28.158645 kcal Electronic energy + Delta-G solvation = -20662.501868 eV Core-core repulsion = 17328.359717 eV Total energy + Delta-G solvation = -3334.142151 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.91585 -41.26306 -38.22019 -37.92581 -36.97257 -34.61258 -32.79329 -31.19672 -30.26439 -28.41396 -27.04445 -25.62719 -24.44083 -23.06792 -20.88898 -20.15602 -19.85252 -19.02458 -18.16201 -17.43445 -17.22814 -16.85531 -16.58052 -16.13671 -16.04881 -15.54910 -15.07235 -14.73230 -14.51862 -14.06582 -13.99675 -13.78053 -13.73171 -13.26704 -12.97890 -12.85433 -12.71033 -12.43227 -12.10481 -12.04677 -11.80402 -11.73953 -11.32570 -11.19875 -10.45904 -9.83394 -9.70285 -8.86129 -8.77452 -6.06797 -0.79826 0.25345 0.41455 0.76256 0.84809 1.40136 1.46107 1.56149 1.66721 1.77690 2.11605 2.68240 2.70754 3.20247 3.59679 3.68648 3.77464 3.95627 4.13657 4.26871 4.33432 4.37250 4.46640 4.50665 4.65176 4.72002 4.99440 5.11451 5.12170 5.33707 5.44103 5.73891 6.16162 6.47091 6.65250 6.92002 7.03861 7.67573 8.28121 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.019332 B = 0.005131 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.045397 B = 5455.368001 C = 6879.954918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.550 3.450 4 O -0.525 6.525 5 C -0.316 4.316 6 S 0.237 5.763 7 C 0.139 3.861 8 N -0.598 5.598 9 C 0.363 3.637 10 N -0.610 5.610 11 C 0.368 3.632 12 N -0.485 5.485 13 C -0.311 4.311 14 H 0.120 0.880 15 C -0.009 4.009 16 N -0.888 5.888 17 Si 1.013 2.987 18 H -0.256 1.256 19 H -0.268 1.268 20 H -0.268 1.268 21 C -0.298 4.298 22 C 0.046 3.954 23 C -0.124 4.124 24 H 0.137 0.863 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.227 0.773 28 H 0.414 0.586 29 H 0.293 0.707 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.167 -8.899 0.097 10.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.275 6.275 3 C 0.397 3.603 4 O -0.418 6.418 5 C -0.434 4.434 6 S 0.495 5.505 7 C -0.114 4.114 8 N -0.329 5.329 9 C 0.068 3.932 10 N -0.340 5.340 11 C 0.113 3.887 12 N -0.090 5.090 13 C -0.443 4.443 14 H 0.138 0.862 15 C -0.215 4.215 16 N -0.522 5.522 17 Si 0.834 3.166 18 H -0.179 1.179 19 H -0.193 1.193 20 H -0.193 1.193 21 C -0.316 4.316 22 C 0.031 3.969 23 C -0.183 4.183 24 H 0.155 0.845 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.243 0.757 28 H 0.258 0.742 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.841 -9.850 0.091 10.976 hybrid contribution -0.676 2.727 -0.024 2.810 sum -5.517 -7.123 0.067 9.011 Atomic orbital electron populations 1.23624 0.73768 1.06029 1.02822 1.86569 1.25658 1.30930 1.84336 1.19502 0.86606 0.81913 0.72230 1.90743 1.66206 1.36115 1.48687 1.21885 0.94173 0.98005 1.29352 1.83419 0.88285 1.02485 1.76276 1.24224 0.98262 0.94196 0.94694 1.68088 0.98123 1.37389 1.29286 1.25156 1.00144 0.82139 0.85753 1.67710 1.17481 1.20675 1.28168 1.18321 0.88729 0.84548 0.97106 1.41862 1.11551 1.01746 1.53888 1.20587 0.91463 0.86308 1.45956 0.86185 1.26616 1.00327 1.00113 0.94448 1.69703 1.19090 1.20190 1.43226 0.84556 0.77163 0.76342 0.78562 1.17943 1.19342 1.19335 1.18629 0.93379 0.95420 1.24144 1.18607 0.90918 0.96130 0.91267 1.21153 1.02939 0.91280 1.02887 0.84470 0.91691 0.91692 0.75704 0.74200 0.89640 0.90176 0.87250 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.57 113.37 1.20 1.75 16 2 O -0.36 -9.79 10.38 -57.89 -0.60 -10.39 16 3 C 0.55 18.54 7.91 70.01 0.55 19.09 16 4 O -0.52 -19.17 13.59 19.50 0.27 -18.91 16 5 C -0.32 -11.53 6.32 23.51 0.15 -11.38 16 6 S 0.24 7.86 23.05 -56.49 -1.30 6.56 16 7 C 0.14 5.64 7.71 84.89 0.65 6.30 16 8 N -0.60 -23.64 10.46 -195.67 -2.05 -25.68 16 9 C 0.36 13.79 12.26 180.95 2.22 16.00 16 10 N -0.61 -27.35 9.19 -196.17 -1.80 -29.16 16 11 C 0.37 17.43 7.53 134.23 1.01 18.44 16 12 N -0.49 -23.84 5.21 -187.25 -0.98 -24.81 16 13 C -0.31 -15.45 9.71 84.07 0.82 -14.64 16 14 H 0.12 5.97 7.12 -2.91 -0.02 5.95 16 15 C -0.01 -0.43 5.50 84.90 0.47 0.04 16 16 N -0.89 -43.10 13.05 21.66 0.28 -42.82 16 17 Si 1.01 36.78 29.55 68.60 2.03 38.80 16 18 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 19 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 20 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 21 C -0.30 -13.07 5.88 -21.37 -0.13 -13.19 16 22 C 0.05 1.85 5.85 -20.45 -0.12 1.73 16 23 C -0.12 -4.91 8.27 71.24 0.59 -4.32 16 24 H 0.14 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.23 6.29 8.06 -2.91 -0.02 6.27 16 28 H 0.41 20.01 3.82 -92.71 -0.35 19.66 16 29 H 0.29 13.08 8.31 -92.71 -0.77 12.31 16 30 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.11 4.19 5.29 -2.39 -0.01 4.17 16 32 H 0.06 2.58 5.81 -2.39 -0.01 2.56 16 Total: -1.00 -58.77 294.28 4.11 -54.67 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.85 Total: 31.91 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 7.41 Total: 19.82 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -4.54 Total: -122.47 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.34 Total: -29.29 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.80 kcal Atomic # 16 Polarization: 7.86 SS G_CDS: -1.30 Total: 6.56 kcal Total: -58.77 4.11 -54.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182324.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.508 kcal (2) G-P(sol) polarization free energy of solvation -58.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds