Wall clock time and date at job start Tue Mar 31 2020 07:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35688 * 116.99900 * 2 1 4 4 N 1.32019 * 119.43229 * 359.97438 * 3 2 1 5 5 C 1.32916 * 121.30332 * 180.02562 * 4 3 2 6 6 C 1.40579 * 120.60737 * 359.97438 * 5 4 3 7 7 C 1.39454 * 119.04404 * 0.03008 * 6 5 4 8 8 C 1.38213 * 118.29016 * 359.93158 * 7 6 5 9 9 C 1.50704 * 120.18887 * 180.02562 * 8 7 6 10 10 N 1.37878 * 119.82069 * 180.02562 * 6 5 4 11 11 H 0.96994 * 119.24812 * 180.02562 * 10 6 5 12 12 C 1.36139 * 121.49987 * 0.28813 * 10 6 5 13 13 C 1.35155 * 122.25505 * 359.36818 * 12 10 6 14 14 Cl 1.73604 * 119.90827 * 180.31606 * 13 12 10 15 15 C 1.41566 * 120.18009 * 0.64416 * 13 12 10 16 16 N 1.33763 * 121.00522 * 179.65505 * 15 13 12 17 17 C 1.32261 * 120.00164 * 8.97718 * 16 15 13 18 18 H 1.08000 * 120.00221 * 44.52979 * 17 16 15 19 19 C 1.40545 * 120.00120 * 224.53471 * 17 16 15 20 20 N 1.30782 * 120.00157 * 179.97438 * 19 17 16 21 21 Si 1.86809 * 120.00008 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47250 * 89.99882 * 21 19 17 23 23 H 1.48495 * 109.46917 * 209.99847 * 21 19 17 24 24 H 1.48501 * 109.46927 * 329.99743 * 21 19 17 25 25 H 1.09001 * 109.47292 * 300.00464 * 1 2 3 26 26 H 1.09001 * 109.47564 * 60.00190 * 1 2 3 27 27 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.85189 * 180.02562 * 7 6 5 29 29 H 1.09008 * 109.46616 * 270.04124 * 9 8 7 30 30 H 1.08992 * 109.47251 * 30.04251 * 9 8 7 31 31 H 1.09005 * 109.47022 * 150.04593 * 9 8 7 32 32 H 1.07999 * 118.87562 * 179.69713 * 12 10 6 33 33 H 0.97003 * 119.99604 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 7 1.3150 2.3090 -0.0005 5 6 1.8794 3.5124 -0.0010 6 6 3.2788 3.6466 -0.0005 7 6 4.0691 2.4977 -0.0001 8 6 3.4376 1.2682 0.0013 9 6 4.2501 -0.0010 0.0024 10 7 3.8470 4.9028 -0.0005 11 1 4.8134 4.9858 -0.0006 12 6 3.0827 6.0294 0.0048 13 6 1.7319 5.9845 -0.0023 14 17 0.8168 7.4598 -0.0032 15 6 1.0612 4.7378 -0.0019 16 7 -0.2749 4.6742 -0.0018 17 6 -0.9893 5.7728 -0.1809 18 1 -0.7151 6.4753 -0.9540 19 6 -2.1054 6.0261 0.6349 20 7 -2.8115 7.1126 0.4582 21 14 -2.5802 4.8107 1.9718 22 1 -1.8870 5.1688 3.2352 23 1 -4.0494 4.8564 2.1831 24 1 -2.1818 3.4408 1.5596 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 5.1469 2.5668 0.0007 29 1 4.4464 -0.3076 -1.0251 30 1 5.1953 0.1731 0.5165 31 1 3.6962 -0.7866 0.5164 32 1 3.5724 6.9919 0.0095 33 1 -3.5816 7.2875 1.0215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187792.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:26 Heat of formation + Delta-G solvation = 34.601601 kcal Electronic energy + Delta-G solvation = -20997.525845 eV Core-core repulsion = 17664.061476 eV Total energy + Delta-G solvation = -3333.464369 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.18249 -38.34142 -36.43743 -35.63731 -34.90059 -33.46722 -32.46873 -30.34243 -28.97782 -26.95116 -26.75077 -24.63803 -22.74567 -22.04864 -20.77945 -18.70148 -17.94298 -17.51351 -16.73234 -15.88341 -15.40552 -15.20679 -14.84994 -14.09779 -13.80305 -13.49154 -13.20640 -12.98114 -12.86324 -12.80102 -12.16143 -12.07324 -11.85209 -11.68261 -11.66217 -11.39243 -11.07978 -10.90699 -10.49529 -10.37222 -10.02070 -9.45262 -9.43715 -8.76231 -8.59269 -8.11943 -7.77729 -7.31837 -6.33944 -4.11515 1.65256 1.92987 2.55447 3.04396 3.11065 3.15651 3.27195 3.72173 3.79029 3.98666 4.19158 4.56897 5.12945 5.18523 5.32520 5.49046 5.53731 5.73945 5.75285 5.86943 5.90091 5.99163 6.13858 6.19433 6.30254 6.38795 6.60365 6.73903 6.84483 7.05892 7.17653 7.62736 7.83493 7.87610 8.07830 8.22070 8.35888 8.85265 9.55595 10.01010 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.015960 B = 0.006941 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.944166 B = 4033.145239 C = 5557.723114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.317 6.317 3 C 0.281 3.719 4 N -0.513 5.513 5 C 0.256 3.744 6 C 0.090 3.910 7 C -0.126 4.126 8 C -0.174 4.174 9 C -0.085 4.085 10 N -0.642 5.642 11 H 0.401 0.599 12 C -0.001 4.001 13 C -0.042 4.042 14 Cl -0.056 7.056 15 C -0.098 4.098 16 N -0.350 5.350 17 C -0.174 4.174 18 H 0.100 0.900 19 C 0.080 3.920 20 N -0.756 5.756 21 Si 0.924 3.076 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.230 1.230 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.128 0.872 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.134 0.866 33 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.838 -4.694 0.929 9.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.225 6.225 3 C 0.104 3.896 4 N -0.236 5.236 5 C 0.117 3.883 6 C -0.012 4.012 7 C -0.155 4.155 8 C -0.178 4.178 9 C -0.142 4.142 10 N -0.262 5.262 11 H 0.235 0.765 12 C -0.122 4.122 13 C -0.077 4.077 14 Cl -0.027 7.027 15 C -0.241 4.241 16 N -0.064 5.064 17 C -0.340 4.340 18 H 0.117 0.883 19 C -0.147 4.147 20 N -0.380 5.380 21 Si 0.746 3.254 22 H -0.191 1.191 23 H -0.208 1.208 24 H -0.152 1.152 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.102 0.898 28 H 0.146 0.854 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.151 0.849 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.208 -5.436 1.041 8.317 hybrid contribution 1.073 1.017 0.156 1.487 sum 7.281 -4.419 1.197 8.601 Atomic orbital electron populations 1.22680 0.78233 1.01376 1.02778 1.86096 1.22028 1.25313 1.89103 1.19461 0.88395 0.84657 0.97113 1.67417 1.38437 0.97081 1.20667 1.18730 0.87235 0.89666 0.92619 1.18523 0.93089 0.85879 1.03723 1.20258 0.98462 0.89539 1.07248 1.19213 0.90695 0.95541 1.12386 1.20370 0.98143 0.94486 1.01223 1.40025 1.07579 1.01439 1.77147 0.76525 1.20212 0.90587 0.89431 1.11949 1.20469 0.90477 0.87395 1.09402 1.98316 1.73324 1.34329 1.96718 1.18014 0.89397 0.86262 1.30406 1.67475 1.04195 1.27908 1.06803 1.21218 1.01161 1.00635 1.10945 0.88304 1.26536 0.92574 0.96418 0.99135 1.69460 1.12275 1.22851 1.33401 0.85775 0.76711 0.83696 0.79200 1.19081 1.20775 1.15205 0.92539 0.92585 0.89837 0.85448 0.92443 0.92618 0.91763 0.84853 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.75 10.37 101.05 1.05 1.80 16 2 O -0.32 -5.92 9.51 -18.77 -0.18 -6.10 16 3 C 0.28 5.80 7.47 -17.04 -0.13 5.67 16 4 N -0.51 -12.05 9.02 -9.68 -0.09 -12.14 16 5 C 0.26 6.06 6.79 -82.81 -0.56 5.50 16 6 C 0.09 1.79 6.67 -83.81 -0.56 1.23 16 7 C -0.13 -2.13 9.71 -39.14 -0.38 -2.51 16 8 C -0.17 -3.10 5.92 -104.20 -0.62 -3.71 16 9 C -0.08 -1.17 9.79 36.01 0.35 -0.82 16 10 N -0.64 -11.00 5.35 -10.50 -0.06 -11.05 16 11 H 0.40 5.18 8.80 -40.82 -0.36 4.82 16 12 C 0.00 -0.03 10.85 -16.74 -0.18 -0.21 16 13 C -0.04 -0.94 6.26 -39.41 -0.25 -1.19 16 14 Cl -0.06 -1.21 23.91 -51.86 -1.24 -2.45 16 15 C -0.10 -2.45 6.81 -82.05 -0.56 -3.01 16 16 N -0.35 -9.27 8.68 -8.62 -0.07 -9.35 16 17 C -0.17 -4.48 7.30 -16.50 -0.12 -4.60 16 18 H 0.10 2.65 5.82 -52.49 -0.31 2.34 16 19 C 0.08 1.95 5.53 -17.13 -0.09 1.85 16 20 N -0.76 -17.81 13.93 55.59 0.77 -17.04 16 21 Si 0.92 20.11 28.56 -169.99 -4.85 15.25 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.23 -5.33 7.11 56.52 0.40 -4.93 16 25 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 26 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 31 H 0.06 0.89 7.53 -51.93 -0.39 0.50 16 32 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 33 H 0.30 6.30 8.29 -40.82 -0.34 5.96 16 LS Contribution 300.88 15.07 4.53 4.53 Total: -1.00 -28.76 300.88 -6.37 -35.13 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -3.14 Total: 3.22 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -2.05 Total: -0.01 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.56 Total: -49.58 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.18 Total: -6.10 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.85 Total: 15.25 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.24 Total: -2.45 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.76 -6.37 -35.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187792.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.734 kcal (2) G-P(sol) polarization free energy of solvation -28.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds