Wall clock time and date at job start Tue Mar 31 2020 07:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35688 * 116.99900 * 2 1 4 4 N 1.32019 * 119.43229 * 359.97438 * 3 2 1 5 5 C 1.32916 * 121.30332 * 180.02562 * 4 3 2 6 6 C 1.40579 * 120.60737 * 359.97438 * 5 4 3 7 7 C 1.39454 * 119.04404 * 0.03008 * 6 5 4 8 8 C 1.38213 * 118.29016 * 359.93158 * 7 6 5 9 9 C 1.50704 * 120.18887 * 180.02562 * 8 7 6 10 10 N 1.37878 * 119.82069 * 180.02562 * 6 5 4 11 11 H 0.96994 * 119.24812 * 180.02562 * 10 6 5 12 12 C 1.36139 * 121.49987 * 0.28813 * 10 6 5 13 13 C 1.35155 * 122.25505 * 359.36818 * 12 10 6 14 14 Cl 1.73604 * 119.90827 * 180.31606 * 13 12 10 15 15 C 1.41566 * 120.18009 * 0.64416 * 13 12 10 16 16 N 1.33763 * 121.00522 * 179.65505 * 15 13 12 17 17 C 1.32261 * 120.00164 * 8.97718 * 16 15 13 18 18 H 1.08000 * 120.00221 * 44.52979 * 17 16 15 19 19 C 1.40545 * 120.00120 * 224.53471 * 17 16 15 20 20 N 1.30782 * 120.00157 * 179.97438 * 19 17 16 21 21 Si 1.86809 * 120.00008 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47250 * 89.99882 * 21 19 17 23 23 H 1.48495 * 109.46917 * 209.99847 * 21 19 17 24 24 H 1.48501 * 109.46927 * 329.99743 * 21 19 17 25 25 H 1.09001 * 109.47292 * 300.00464 * 1 2 3 26 26 H 1.09001 * 109.47564 * 60.00190 * 1 2 3 27 27 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.85189 * 180.02562 * 7 6 5 29 29 H 1.09008 * 109.46616 * 270.04124 * 9 8 7 30 30 H 1.08992 * 109.47251 * 30.04251 * 9 8 7 31 31 H 1.09005 * 109.47022 * 150.04593 * 9 8 7 32 32 H 1.07999 * 118.87562 * 179.69713 * 12 10 6 33 33 H 0.97003 * 119.99604 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 7 1.3150 2.3090 -0.0005 5 6 1.8794 3.5124 -0.0010 6 6 3.2788 3.6466 -0.0005 7 6 4.0691 2.4977 -0.0001 8 6 3.4376 1.2682 0.0013 9 6 4.2501 -0.0010 0.0024 10 7 3.8470 4.9028 -0.0005 11 1 4.8134 4.9858 -0.0006 12 6 3.0827 6.0294 0.0048 13 6 1.7319 5.9845 -0.0023 14 17 0.8168 7.4598 -0.0032 15 6 1.0612 4.7378 -0.0019 16 7 -0.2749 4.6742 -0.0018 17 6 -0.9893 5.7728 -0.1809 18 1 -0.7151 6.4753 -0.9540 19 6 -2.1054 6.0261 0.6349 20 7 -2.8115 7.1126 0.4582 21 14 -2.5802 4.8107 1.9718 22 1 -1.8870 5.1688 3.2352 23 1 -4.0494 4.8564 2.1831 24 1 -2.1818 3.4408 1.5596 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 5.1469 2.5668 0.0007 29 1 4.4464 -0.3076 -1.0251 30 1 5.1953 0.1731 0.5165 31 1 3.6962 -0.7866 0.5164 32 1 3.5724 6.9919 0.0095 33 1 -3.5816 7.2875 1.0215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187792.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:25 Heat of formation + Delta-G solvation = 13.596260 kcal Electronic energy + Delta-G solvation = -20998.436705 eV Core-core repulsion = 17664.061476 eV Total energy + Delta-G solvation = -3334.375229 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.77025 -39.88334 -38.02222 -37.23695 -36.52018 -35.05813 -34.03396 -31.89887 -30.61381 -28.31735 -28.21299 -26.28309 -24.30134 -23.57943 -22.40431 -20.30672 -19.56591 -19.09999 -18.27349 -17.54531 -16.92061 -16.75224 -16.44055 -15.78837 -15.39423 -14.93846 -14.81160 -14.40278 -14.33586 -14.14785 -13.75818 -13.60778 -13.36634 -13.20229 -13.06244 -12.86703 -12.62659 -12.37739 -12.18478 -12.00635 -11.64144 -11.15716 -11.05180 -10.38263 -10.22596 -9.80222 -9.33062 -8.96927 -7.98500 -5.84325 0.06300 0.31430 0.96123 1.28899 1.35809 1.51186 1.60404 2.05545 2.27014 2.34544 2.68578 2.89249 3.46424 3.56859 3.81132 4.05537 4.21376 4.34272 4.44180 4.51299 4.59180 4.69538 4.80756 4.82214 4.95784 4.98737 5.16922 5.25640 5.38813 5.50908 5.63064 5.83963 6.17726 6.30274 6.46577 6.62434 6.89701 7.23709 7.97905 8.28532 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.015960 B = 0.006941 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.944166 B = 4033.145239 C = 5557.723114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.315 6.315 3 C 0.253 3.747 4 N -0.537 5.537 5 C 0.197 3.803 6 C 0.084 3.916 7 C -0.098 4.098 8 C -0.149 4.149 9 C -0.085 4.085 10 N -0.621 5.621 11 H 0.430 0.570 12 C 0.067 3.933 13 C -0.112 4.112 14 Cl -0.062 7.062 15 C -0.085 4.085 16 N -0.385 5.385 17 C -0.234 4.234 18 H 0.075 0.925 19 C 0.057 3.943 20 N -0.800 5.800 21 Si 0.965 3.035 22 H -0.273 1.273 23 H -0.256 1.256 24 H -0.261 1.261 25 H 0.035 0.965 26 H 0.037 0.963 27 H 0.129 0.871 28 H 0.185 0.815 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.179 0.821 33 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.271 -7.055 1.244 15.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.223 6.223 3 C 0.073 3.927 4 N -0.260 5.260 5 C 0.059 3.941 6 C -0.020 4.020 7 C -0.126 4.126 8 C -0.153 4.153 9 C -0.142 4.142 10 N -0.242 5.242 11 H 0.269 0.731 12 C -0.056 4.056 13 C -0.148 4.148 14 Cl -0.034 7.034 15 C -0.236 4.236 16 N -0.099 5.099 17 C -0.392 4.392 18 H 0.092 0.908 19 C -0.164 4.164 20 N -0.427 5.427 21 Si 0.787 3.213 22 H -0.198 1.198 23 H -0.181 1.181 24 H -0.185 1.185 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.147 0.853 28 H 0.202 0.798 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.196 0.804 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.550 -7.743 1.356 13.971 hybrid contribution 0.255 1.253 0.018 1.279 sum 11.805 -6.490 1.374 13.541 Atomic orbital electron populations 1.22784 0.77448 1.03705 1.00871 1.86101 1.22721 1.24429 1.89035 1.20021 0.89931 0.84463 0.98247 1.67263 1.40609 0.98154 1.19980 1.18926 0.89206 0.89221 0.96777 1.18634 0.91858 0.87786 1.03674 1.20922 1.00906 0.87721 1.03086 1.19965 0.89886 0.98013 1.07459 1.20521 0.98817 0.91981 1.02924 1.40175 1.09037 1.00283 1.74715 0.73107 1.20882 0.89628 0.91461 1.03652 1.20520 0.91906 0.86960 1.15399 1.98302 1.74118 1.33904 1.97030 1.18896 0.90107 0.88367 1.26257 1.67623 1.05142 1.29089 1.08012 1.20763 1.03536 1.01677 1.13270 0.90774 1.26687 0.92747 0.97148 0.99785 1.69456 1.13968 1.23832 1.35426 0.85263 0.77754 0.80753 0.77574 1.19844 1.18082 1.18547 0.94576 0.94451 0.85305 0.79773 0.90576 0.89125 0.91813 0.80439 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.56 10.37 113.37 1.18 2.73 16 2 O -0.31 -11.16 9.51 -90.07 -0.86 -12.01 16 3 C 0.25 9.87 7.47 84.94 0.63 10.50 16 4 N -0.54 -25.22 9.02 -297.53 -2.68 -27.91 16 5 C 0.20 9.17 6.79 41.95 0.28 9.46 16 6 C 0.08 2.95 6.67 39.06 0.26 3.21 16 7 C -0.10 -2.67 9.71 22.56 0.22 -2.45 16 8 C -0.15 -4.52 5.92 -19.59 -0.12 -4.63 16 9 C -0.09 -1.78 9.79 71.24 0.70 -1.08 16 10 N -0.62 -17.78 5.35 -187.15 -1.00 -18.78 16 11 H 0.43 7.76 8.80 -92.71 -0.82 6.94 16 12 C 0.07 2.26 10.85 83.31 0.90 3.16 16 13 C -0.11 -5.00 6.26 22.38 0.14 -4.86 16 14 Cl -0.06 -2.82 23.91 -2.72 -0.07 -2.89 16 15 C -0.08 -4.38 6.81 42.07 0.29 -4.10 16 16 N -0.38 -21.85 8.68 -181.17 -1.57 -23.42 16 17 C -0.23 -13.18 7.30 85.19 0.62 -12.56 16 18 H 0.07 4.39 5.82 -2.91 -0.02 4.38 16 19 C 0.06 3.03 5.53 85.41 0.47 3.50 16 20 N -0.80 -41.20 13.93 21.95 0.31 -40.89 16 21 Si 0.96 44.75 28.56 68.60 1.96 46.71 16 22 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 24 H -0.26 -13.19 7.11 99.48 0.71 -12.48 16 25 H 0.04 1.32 8.10 -2.39 -0.02 1.30 16 26 H 0.04 1.35 8.10 -2.39 -0.02 1.33 16 27 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 28 H 0.19 3.03 8.06 -2.91 -0.02 3.01 16 29 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.09 1.35 8.09 -2.39 -0.02 1.33 16 31 H 0.06 1.41 7.53 -2.38 -0.02 1.39 16 32 H 0.18 4.49 8.06 -2.91 -0.02 4.46 16 33 H 0.30 13.97 8.29 -92.71 -0.77 13.20 16 Total: -1.00 -70.85 300.88 2.03 -68.82 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 0.36 Total: 7.48 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 5.58 Total: 2.88 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -4.95 Total: -111.00 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.86 Total: -12.01 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.96 Total: 46.71 kcal Atomic # 17 Polarization: -2.82 SS G_CDS: -0.07 Total: -2.89 kcal Total: -70.85 2.03 -68.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187792.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.418 kcal (2) G-P(sol) polarization free energy of solvation -70.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds