Wall clock time and date at job start Tue Mar 31 2020 07:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86802 * 120.00061 * 2 1 4 4 H 1.48510 * 109.47099 * 269.99999 * 3 2 1 5 5 H 1.48505 * 109.46968 * 29.99398 * 3 2 1 6 6 H 1.48493 * 109.47438 * 149.99786 * 3 2 1 7 7 C 1.40052 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00482 * 180.02562 * 7 2 1 9 9 C 1.41582 * 119.99473 * 0.02562 * 7 2 1 10 10 N 1.33455 * 119.23922 * 359.96882 * 9 7 2 11 11 C 1.32146 * 120.84313 * 180.02562 * 10 9 7 12 12 Cl 1.73601 * 120.34041 * 180.02562 * 11 10 9 13 13 C 1.38916 * 119.31632 * 0.02562 * 11 10 9 14 14 C 1.39920 * 118.59096 * 0.02562 * 13 11 10 15 15 N 1.38877 * 120.43837 * 180.24825 * 14 13 11 16 16 C 1.36583 * 119.99674 * 188.27297 * 15 14 13 17 17 C 1.34951 * 119.41056 * 15.49258 * 16 15 14 18 18 C 1.39951 * 121.68564 * 180.22078 * 17 16 15 19 19 O 1.21526 * 119.70767 * 180.16921 * 18 17 16 20 20 C 1.50684 * 120.58493 * 0.14549 * 18 17 16 21 21 C 1.53200 * 109.08200 * 28.85475 * 20 18 17 22 22 C 1.50541 * 119.40975 * 195.22150 * 16 15 14 23 23 N 1.32551 * 119.11493 * 359.97438 * 14 13 11 24 24 H 0.97002 * 120.00209 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.70655 * 180.02562 * 13 11 10 26 26 H 0.96996 * 120.00676 * 8.27422 * 15 14 13 27 27 H 1.08001 * 119.16075 * 0.20280 * 17 16 15 28 28 H 1.08997 * 109.53617 * 148.73270 * 20 18 17 29 29 H 1.09000 * 109.54048 * 268.97280 * 20 18 17 30 30 H 1.09006 * 109.57390 * 63.06046 * 21 20 18 31 31 H 1.08992 * 109.57884 * 183.31057 * 21 20 18 32 32 H 1.08995 * 109.47224 * 270.32566 * 22 16 15 33 33 H 1.08996 * 109.47136 * 30.33073 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4884 2.0464 -1.4002 5 1 1.4382 2.6527 0.6999 6 1 3.5384 1.4403 0.7000 7 6 2.0072 -1.2128 0.0005 8 1 3.0872 -1.2128 0.0010 9 6 1.2993 -2.4390 0.0005 10 7 -0.0351 -2.4212 0.0007 11 6 -0.7276 -3.5467 0.0012 12 17 -2.4632 -3.5084 0.0006 13 6 -0.0525 -4.7608 0.0021 14 6 1.3467 -4.7488 0.0031 15 7 2.0604 -5.9401 -0.0011 16 6 3.4154 -5.9250 0.1700 17 6 4.0104 -4.8127 0.6496 18 6 5.3952 -4.7434 0.8393 19 8 5.8930 -3.7245 1.2763 20 6 6.2745 -5.9211 0.5069 21 6 5.6237 -6.7299 -0.6197 22 6 4.2177 -7.1514 -0.1739 23 7 1.9817 -3.5853 0.0025 24 1 -0.4850 0.8400 -0.0004 25 1 -0.5960 -5.6940 0.0021 26 1 1.5968 -6.7830 -0.1256 27 1 3.4024 -3.9539 0.8930 28 1 7.2525 -5.5657 0.1823 29 1 6.3887 -6.5512 1.3889 30 1 5.5568 -6.1163 -1.5182 31 1 6.2234 -7.6161 -0.8266 32 1 4.2890 -7.7963 0.7019 33 1 3.7270 -7.6913 -0.9837 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163452038.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:16 Heat of formation + Delta-G solvation = 9.934856 kcal Electronic energy + Delta-G solvation = -20727.844487 eV Core-core repulsion = 17393.310488 eV Total energy + Delta-G solvation = -3334.533999 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.65945 -40.48579 -38.70422 -37.45420 -36.27258 -35.34267 -33.27624 -32.18564 -30.61224 -29.33136 -28.39350 -24.76118 -24.31571 -23.15410 -22.46008 -20.19064 -18.99445 -18.52422 -17.82878 -17.33088 -16.70555 -16.32652 -15.98704 -15.83939 -15.65081 -15.38576 -14.99920 -14.78041 -14.67830 -14.09126 -13.65920 -13.35440 -13.13875 -13.10874 -12.85763 -12.56594 -12.32706 -12.09791 -11.97453 -11.92201 -11.80457 -11.19809 -10.99301 -10.61069 -10.35423 -10.05971 -9.32389 -8.64710 -8.51811 -6.90444 0.07406 0.49514 1.01274 1.05524 1.35904 1.45132 1.51585 2.07037 2.17122 2.39691 2.63833 3.61845 3.71314 3.74095 3.91608 4.04997 4.14849 4.18776 4.49523 4.54425 4.65399 4.77052 4.78607 4.87518 4.94593 5.06867 5.10012 5.31077 5.39347 5.56186 5.98207 5.99683 6.01502 6.21832 6.49460 6.69350 7.03899 7.06129 8.01437 8.22974 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.006361 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.010838 B = 4400.825525 C = 6483.564270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.729 5.729 2 C 0.028 3.972 3 Si 0.993 3.007 4 H -0.255 1.255 5 H -0.256 1.256 6 H -0.265 1.265 7 C -0.417 4.417 8 H 0.085 0.915 9 C 0.395 3.605 10 N -0.550 5.550 11 C 0.245 3.755 12 Cl -0.047 7.047 13 C -0.378 4.378 14 C 0.414 3.586 15 N -0.617 5.617 16 C 0.239 3.761 17 C -0.396 4.396 18 C 0.387 3.613 19 O -0.560 6.560 20 C -0.162 4.162 21 C -0.100 4.100 22 C -0.090 4.090 23 N -0.617 5.617 24 H 0.289 0.711 25 H 0.156 0.844 26 H 0.436 0.564 27 H 0.142 0.858 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.056 0.944 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 -15.081 -2.175 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.350 5.350 2 C -0.198 4.198 3 Si 0.812 3.188 4 H -0.180 1.180 5 H -0.179 1.179 6 H -0.189 1.189 7 C -0.452 4.452 8 H 0.103 0.897 9 C 0.160 3.840 10 N -0.271 5.271 11 C 0.065 3.935 12 Cl -0.019 7.019 13 C -0.410 4.410 14 C 0.168 3.832 15 N -0.240 5.240 16 C 0.132 3.868 17 C -0.423 4.423 18 C 0.276 3.724 19 O -0.446 6.446 20 C -0.199 4.199 21 C -0.138 4.138 22 C -0.128 4.128 23 N -0.345 5.345 24 H 0.100 0.900 25 H 0.174 0.826 26 H 0.277 0.723 27 H 0.158 0.842 28 H 0.108 0.892 29 H 0.137 0.863 30 H 0.075 0.925 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.055 -13.446 -1.976 14.182 hybrid contribution -0.965 0.131 0.084 0.977 sum 3.090 -13.314 -1.891 13.798 Atomic orbital electron populations 1.70164 1.08601 1.30185 1.26021 1.26967 0.95895 1.04370 0.92565 0.85049 0.78708 0.75100 0.79988 1.17966 1.17945 1.18905 1.19695 0.94720 0.88810 1.41945 0.89695 1.19953 0.84346 0.91157 0.88546 1.68588 1.08216 1.27401 1.22931 1.21936 0.87212 0.90879 0.93504 1.98302 1.08408 1.98760 1.96469 1.21217 0.92474 0.98441 1.28860 1.18610 0.88098 0.86914 0.89538 1.41482 1.05378 1.06259 1.70840 1.20920 0.82960 0.96519 0.86366 1.22749 0.97742 1.04663 1.17182 1.21183 0.90147 0.88234 0.72824 1.90522 1.78398 1.34854 1.40852 1.22148 0.99291 0.96303 1.02188 1.21618 0.94470 1.01149 0.96554 1.21142 0.94548 0.92054 1.05041 1.68612 1.38330 0.97777 1.29760 0.90010 0.82620 0.72329 0.84150 0.89183 0.86261 0.92515 0.85846 0.85576 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -38.78 11.42 21.84 0.25 -38.53 16 2 C 0.03 1.42 5.50 85.30 0.47 1.89 16 3 Si 0.99 39.56 29.56 68.60 2.03 41.59 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 5 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.42 -23.92 9.37 23.54 0.22 -23.70 16 8 H 0.08 4.94 7.85 -2.91 -0.02 4.92 16 9 C 0.40 22.63 7.37 135.16 1.00 23.63 16 10 N -0.55 -30.46 7.86 -184.97 -1.45 -31.91 16 11 C 0.24 11.54 7.33 84.81 0.62 12.16 16 12 Cl -0.05 -1.87 29.15 -2.72 -0.08 -1.95 16 13 C -0.38 -15.32 9.87 22.84 0.23 -15.09 16 14 C 0.41 17.42 7.29 133.25 0.97 18.39 16 15 N -0.62 -18.07 5.42 -180.13 -0.98 -19.05 16 16 C 0.24 6.88 6.55 41.01 0.27 7.15 16 17 C -0.40 -15.98 8.41 21.93 0.18 -15.80 16 18 C 0.39 14.82 6.79 26.10 0.18 14.99 16 19 O -0.56 -27.46 17.82 -3.80 -0.07 -27.53 16 20 C -0.16 -3.67 6.08 29.91 0.18 -3.49 16 21 C -0.10 -1.55 6.02 30.79 0.19 -1.36 16 22 C -0.09 -1.32 5.99 29.93 0.18 -1.14 16 23 N -0.62 -32.03 6.18 -191.38 -1.18 -33.21 16 24 H 0.29 13.70 8.29 -92.71 -0.77 12.93 16 25 H 0.16 4.90 8.06 -2.91 -0.02 4.88 16 26 H 0.44 8.27 8.76 -92.71 -0.81 7.46 16 27 H 0.14 7.37 4.65 -31.39 -0.15 7.22 16 28 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -78.65 301.75 3.43 -75.22 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.23 Total: 17.74 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 4.68 Total: 17.64 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -3.36 Total: -122.70 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.07 Total: -27.53 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.08 Total: -1.95 kcal Total: -78.65 3.43 -75.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163452038.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.155 kcal (2) G-P(sol) polarization free energy of solvation -78.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds