Wall clock time and date at job start Tue Mar 31 2020 06:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36928 * 119.99952 * 2 1 4 4 H 1.08006 * 119.99750 * 205.40505 * 3 2 1 5 5 C 1.38810 * 120.00430 * 25.40609 * 3 2 1 6 6 N 1.31619 * 119.99912 * 11.61794 * 5 3 2 7 7 Si 1.86802 * 120.00217 * 191.62039 * 5 3 2 8 8 H 1.48502 * 109.47182 * 59.99984 * 7 5 3 9 9 H 1.48500 * 109.46855 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47074 * 299.99850 * 7 5 3 11 11 C 1.46501 * 119.99761 * 179.97438 * 2 1 3 12 12 F 1.39902 * 109.47376 * 239.99646 * 11 2 1 13 13 F 1.39905 * 109.46789 * 119.99999 * 11 2 1 14 14 C 1.53001 * 109.47537 * 0.02562 * 11 2 1 15 15 O 1.42896 * 109.47357 * 179.97438 * 14 11 2 16 16 C 1.35717 * 117.00264 * 179.97438 * 15 14 11 17 17 C 1.39284 * 120.12404 * 179.97438 * 16 15 14 18 18 C 1.38600 * 117.92796 * 180.02562 * 17 16 15 19 19 C 1.38905 * 118.00714 * 0.02562 * 18 17 16 20 20 Cl 1.73595 * 120.02808 * 180.02562 * 19 18 17 21 21 N 1.31900 * 119.94422 * 359.97438 * 19 18 17 22 22 N 1.28350 * 122.24144 * 0.02562 * 21 19 18 23 23 H 1.08997 * 109.46729 * 264.88491 * 1 2 3 24 24 H 1.08992 * 109.47315 * 24.88726 * 1 2 3 25 25 H 1.08998 * 109.47256 * 144.88824 * 1 2 3 26 26 H 0.96994 * 120.00483 * 180.02562 * 6 5 3 27 27 H 1.09004 * 109.46913 * 59.99861 * 14 11 2 28 28 H 1.09002 * 109.46909 * 299.99844 * 14 11 2 29 29 H 1.07996 * 121.03497 * 0.05097 * 17 16 15 30 30 H 1.07999 * 120.99712 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1514 1.2310 -0.4013 5 6 1.5563 2.3299 0.5157 6 7 0.4402 2.2378 1.2071 7 14 2.3420 4.0001 0.2285 8 1 2.4231 4.2647 -1.2305 9 1 1.5188 5.0524 0.8768 10 1 3.7082 4.0112 0.8103 11 6 2.1975 -1.2688 0.0006 12 9 3.0019 -1.3424 1.1428 13 9 3.0018 -1.3433 -1.1417 14 6 1.2032 -2.4317 0.0004 15 8 1.9177 -3.6693 0.0004 16 6 1.1786 -4.8075 0.0008 17 6 1.8083 -6.0499 0.0003 18 6 1.0095 -7.1825 0.0002 19 6 -0.3687 -7.0087 0.0001 20 17 -1.4186 -8.3912 0.0007 21 7 -0.8789 -5.7924 0.0007 22 7 -0.1427 -4.7411 0.0007 23 1 -0.3633 -0.0916 1.0236 24 1 -0.3633 0.9321 -0.4324 25 1 -0.3634 -0.8406 -0.5911 26 1 0.0253 3.0372 1.5672 27 1 0.5769 -2.3742 -0.8898 28 1 0.5763 -2.3738 0.8902 29 1 2.8854 -6.1282 0.0003 30 1 1.4454 -8.1706 0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165092088.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:44 Heat of formation + Delta-G solvation = -45.676313 kcal Electronic energy + Delta-G solvation = -21130.889515 eV Core-core repulsion = 17239.714505 eV Total energy + Delta-G solvation = -3891.175010 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.048 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -47.83569 -45.96428 -41.52212 -38.75554 -37.09038 -35.54098 -33.66801 -32.04031 -31.35401 -28.61907 -26.21473 -25.29341 -24.46363 -23.57680 -20.57198 -19.09619 -18.06831 -17.56498 -17.21971 -17.12621 -16.16487 -16.10883 -15.52766 -14.65864 -14.62416 -14.35210 -13.95614 -13.61003 -13.15790 -12.89310 -12.57059 -12.36596 -12.26903 -12.16475 -12.02224 -11.78725 -11.43469 -11.42546 -11.05763 -10.80566 -10.61042 -10.49958 -10.18348 -10.02201 -9.91482 -9.24397 -8.81976 -7.39021 -6.01739 -3.58361 0.32346 0.51256 1.30191 2.47496 3.08806 3.31718 3.35284 3.37550 3.71912 4.00261 4.07818 4.35567 4.38411 4.44157 4.81357 4.92857 4.98240 5.22343 5.26004 5.35994 5.45442 5.79616 6.16533 6.45853 6.73072 7.04218 7.36023 7.62844 8.01264 8.20144 8.87265 9.40779 9.87695 11.05411 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.039789 B = 0.003418 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.535603 B = 8189.182731 C = 8661.643633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.151 3.849 2 N -0.599 5.599 3 C -0.278 4.278 4 H 0.077 0.923 5 C 0.019 3.981 6 N -0.898 5.898 7 Si 0.920 3.080 8 H -0.279 1.279 9 H -0.287 1.287 10 H -0.278 1.278 11 C 0.510 3.490 12 F -0.209 7.209 13 F -0.210 7.210 14 C 0.037 3.963 15 O -0.283 6.283 16 C 0.277 3.723 17 C -0.118 4.118 18 C -0.072 4.072 19 C 0.075 3.925 20 Cl -0.009 7.009 21 N -0.188 5.188 22 N -0.277 5.277 23 H 0.033 0.967 24 H 0.075 0.925 25 H 0.010 0.990 26 H 0.260 0.740 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.169 0.831 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.460 -19.343 -2.484 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.330 5.330 3 C -0.406 4.406 4 H 0.095 0.905 5 C -0.182 4.182 6 N -0.540 5.540 7 Si 0.748 3.252 8 H -0.204 1.204 9 H -0.212 1.212 10 H -0.204 1.204 11 C 0.385 3.615 12 F -0.190 7.190 13 F -0.192 7.192 14 C -0.040 4.040 15 O -0.185 6.185 16 C 0.092 3.908 17 C -0.148 4.148 18 C -0.101 4.101 19 C -0.099 4.099 20 Cl 0.019 6.981 21 N -0.033 5.033 22 N -0.135 5.135 23 H 0.051 0.949 24 H 0.093 0.907 25 H 0.028 0.972 26 H 0.071 0.929 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.187 0.813 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.635 -18.258 -2.392 18.487 hybrid contribution 1.509 -0.024 0.048 1.510 sum -0.127 -18.282 -2.344 18.433 Atomic orbital electron populations 1.21117 0.79919 0.99332 0.98884 1.45023 1.03307 0.99250 1.85394 1.19155 1.01131 0.84412 1.35925 0.90524 1.25179 0.97585 0.99309 0.96133 1.70046 1.19693 1.28779 1.35484 0.86107 0.78725 0.82167 0.78195 1.20444 1.21231 1.20379 1.19628 0.80111 0.88346 0.73426 1.93037 1.76982 1.96646 1.52368 1.93019 1.76808 1.96672 1.52674 1.23986 0.94810 0.78914 1.06311 1.86296 1.33594 1.12371 1.86263 1.21609 0.90044 0.88196 0.90971 1.21631 1.03291 0.88722 1.01136 1.22083 0.91375 1.00950 0.95671 1.23311 0.90487 0.91415 1.04721 1.98417 1.66763 1.36278 1.96654 1.72698 1.29661 0.94269 1.06680 1.73290 1.03018 1.20609 1.16609 0.94872 0.90666 0.97207 0.92947 0.87926 0.87888 0.81308 0.81537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.52 8.04 59.85 0.48 4.00 16 2 N -0.60 -15.31 3.20 -179.43 -0.57 -15.88 16 3 C -0.28 -7.75 9.38 -15.06 -0.14 -7.89 16 4 H 0.08 2.14 7.86 -52.48 -0.41 1.73 16 5 C 0.02 0.51 5.06 -17.43 -0.09 0.42 16 6 N -0.90 -25.22 10.84 55.49 0.60 -24.62 16 7 Si 0.92 21.45 29.57 -169.99 -5.03 16.42 16 8 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 9 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 C 0.51 11.56 2.34 -4.04 -0.01 11.55 16 12 F -0.21 -5.02 17.02 2.25 0.04 -4.98 16 13 F -0.21 -4.80 17.02 2.25 0.04 -4.76 16 14 C 0.04 0.67 3.66 37.16 0.14 0.81 16 15 O -0.28 -4.69 10.02 -18.86 -0.19 -4.88 16 16 C 0.28 3.91 7.57 -16.96 -0.13 3.78 16 17 C -0.12 -1.16 10.15 -39.06 -0.40 -1.56 16 18 C -0.07 -0.60 9.99 -39.20 -0.39 -0.99 16 19 C 0.07 0.81 7.36 -17.28 -0.13 0.69 16 20 Cl -0.01 -0.08 29.13 -51.86 -1.51 -1.59 16 21 N -0.19 -2.67 11.48 32.89 0.38 -2.29 16 22 N -0.28 -4.27 10.40 30.50 0.32 -3.96 16 23 H 0.03 0.81 7.85 -51.93 -0.41 0.40 16 24 H 0.07 1.89 6.78 -51.93 -0.35 1.53 16 25 H 0.01 0.19 5.99 -51.93 -0.31 -0.12 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.10 1.79 6.84 -51.93 -0.36 1.44 16 28 H 0.10 1.89 7.75 -51.93 -0.40 1.49 16 29 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.17 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 291.07 15.07 4.39 4.39 Total: -1.00 -30.98 291.07 -4.43 -35.41 By element: Atomic # 1 Polarization: -1.85 SS G_CDS: -2.22 Total: -4.07 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -0.67 Total: 10.81 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.72 Total: -46.75 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.19 Total: -4.88 kcal Atomic # 9 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.51 Total: -1.59 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.98 -4.43 -35.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165092088.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.268 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds