Wall clock time and date at job start Tue Mar 31 2020 06:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36928 * 119.99952 * 2 1 4 4 H 1.08006 * 119.99750 * 205.40505 * 3 2 1 5 5 C 1.38810 * 120.00430 * 25.40609 * 3 2 1 6 6 N 1.31619 * 119.99912 * 11.61794 * 5 3 2 7 7 Si 1.86802 * 120.00217 * 191.62039 * 5 3 2 8 8 H 1.48502 * 109.47182 * 59.99984 * 7 5 3 9 9 H 1.48500 * 109.46855 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47074 * 299.99850 * 7 5 3 11 11 C 1.46501 * 119.99761 * 179.97438 * 2 1 3 12 12 F 1.39902 * 109.47376 * 239.99646 * 11 2 1 13 13 F 1.39905 * 109.46789 * 119.99999 * 11 2 1 14 14 C 1.53001 * 109.47537 * 0.02562 * 11 2 1 15 15 O 1.42896 * 109.47357 * 179.97438 * 14 11 2 16 16 C 1.35717 * 117.00264 * 179.97438 * 15 14 11 17 17 C 1.39284 * 120.12404 * 179.97438 * 16 15 14 18 18 C 1.38600 * 117.92796 * 180.02562 * 17 16 15 19 19 C 1.38905 * 118.00714 * 0.02562 * 18 17 16 20 20 Cl 1.73595 * 120.02808 * 180.02562 * 19 18 17 21 21 N 1.31900 * 119.94422 * 359.97438 * 19 18 17 22 22 N 1.28350 * 122.24144 * 0.02562 * 21 19 18 23 23 H 1.08997 * 109.46729 * 264.88491 * 1 2 3 24 24 H 1.08992 * 109.47315 * 24.88726 * 1 2 3 25 25 H 1.08998 * 109.47256 * 144.88824 * 1 2 3 26 26 H 0.96994 * 120.00483 * 180.02562 * 6 5 3 27 27 H 1.09004 * 109.46913 * 59.99861 * 14 11 2 28 28 H 1.09002 * 109.46909 * 299.99844 * 14 11 2 29 29 H 1.07996 * 121.03497 * 0.05097 * 17 16 15 30 30 H 1.07999 * 120.99712 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1514 1.2310 -0.4013 5 6 1.5563 2.3299 0.5157 6 7 0.4402 2.2378 1.2071 7 14 2.3420 4.0001 0.2285 8 1 2.4231 4.2647 -1.2305 9 1 1.5188 5.0524 0.8768 10 1 3.7082 4.0112 0.8103 11 6 2.1975 -1.2688 0.0006 12 9 3.0019 -1.3424 1.1428 13 9 3.0018 -1.3433 -1.1417 14 6 1.2032 -2.4317 0.0004 15 8 1.9177 -3.6693 0.0004 16 6 1.1786 -4.8075 0.0008 17 6 1.8083 -6.0499 0.0003 18 6 1.0095 -7.1825 0.0002 19 6 -0.3687 -7.0087 0.0001 20 17 -1.4186 -8.3912 0.0007 21 7 -0.8789 -5.7924 0.0007 22 7 -0.1427 -4.7411 0.0007 23 1 -0.3633 -0.0916 1.0236 24 1 -0.3633 0.9321 -0.4324 25 1 -0.3634 -0.8406 -0.5911 26 1 0.0253 3.0372 1.5672 27 1 0.5769 -2.3742 -0.8898 28 1 0.5763 -2.3738 0.8902 29 1 2.8854 -6.1282 0.0003 30 1 1.4454 -8.1706 0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165092088.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:43 Heat of formation + Delta-G solvation = -67.893533 kcal Electronic energy + Delta-G solvation = -21131.852926 eV Core-core repulsion = 17239.714505 eV Total energy + Delta-G solvation = -3892.138421 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.048 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.67468 -47.81727 -42.48136 -39.92000 -37.89717 -37.46249 -34.52853 -33.72120 -32.66074 -30.21690 -28.15030 -26.47736 -25.63337 -24.99244 -22.33244 -20.38235 -19.22808 -19.00703 -18.80987 -18.31526 -17.90930 -17.41011 -17.24620 -16.29058 -15.79877 -15.42968 -15.16775 -14.96259 -14.72035 -14.64685 -14.31854 -14.22024 -14.07662 -13.45163 -13.27962 -13.03131 -12.96137 -12.64034 -12.56915 -12.55545 -12.37638 -12.15319 -11.83977 -11.38984 -10.87751 -10.83593 -10.27738 -9.42369 -8.09001 -5.71034 -0.47341 -0.38744 0.47325 1.24198 1.45777 1.47954 1.55959 2.17602 2.31763 2.55564 2.77660 3.00824 3.09325 3.18981 3.52151 3.56378 3.62741 3.78746 4.02862 4.25243 4.40728 4.58626 4.64879 4.78781 5.10509 5.38055 5.50789 5.58210 6.01458 6.81842 7.26101 7.35606 7.81596 8.96456 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.039789 B = 0.003418 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.535603 B = 8189.182731 C = 8661.643633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.617 5.617 3 C -0.304 4.304 4 H 0.067 0.933 5 C -0.025 4.025 6 N -0.921 5.921 7 Si 0.984 3.016 8 H -0.271 1.271 9 H -0.282 1.282 10 H -0.275 1.275 11 C 0.503 3.497 12 F -0.220 7.220 13 F -0.213 7.213 14 C 0.058 3.942 15 O -0.293 6.293 16 C 0.252 3.748 17 C -0.106 4.106 18 C -0.050 4.050 19 C 0.076 3.924 20 Cl 0.009 6.991 21 N -0.226 5.226 22 N -0.310 5.310 23 H 0.017 0.983 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.261 0.739 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.202 0.798 30 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.194 -21.300 -2.868 21.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.348 5.348 3 C -0.433 4.433 4 H 0.085 0.915 5 C -0.223 4.223 6 N -0.563 5.563 7 Si 0.809 3.191 8 H -0.197 1.197 9 H -0.207 1.207 10 H -0.201 1.201 11 C 0.378 3.622 12 F -0.202 7.202 13 F -0.195 7.195 14 C -0.019 4.019 15 O -0.197 6.197 16 C 0.066 3.934 17 C -0.135 4.135 18 C -0.078 4.078 19 C -0.099 4.099 20 Cl 0.037 6.963 21 N -0.070 5.070 22 N -0.167 5.167 23 H 0.035 0.965 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.128 0.872 28 H 0.118 0.882 29 H 0.219 0.781 30 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.005 -20.244 -2.782 20.459 hybrid contribution 1.287 0.352 0.155 1.343 sum 0.282 -19.892 -2.628 20.067 Atomic orbital electron populations 1.20957 0.79158 0.99607 0.98345 1.45177 1.04056 0.99871 1.85668 1.19332 1.01113 0.86102 1.36723 0.91509 1.25961 0.98083 1.02503 0.95762 1.70174 1.20657 1.29566 1.35941 0.85127 0.77818 0.77823 0.78328 1.19666 1.20724 1.20075 1.19911 0.80419 0.89064 0.72770 1.93000 1.77403 1.96718 1.53043 1.92996 1.77069 1.96700 1.52731 1.23483 0.93007 0.78943 1.06454 1.86237 1.33737 1.12300 1.87396 1.21944 0.90229 0.88417 0.92827 1.22052 1.05008 0.87112 0.99322 1.22603 0.89835 1.02529 0.92867 1.23700 0.92135 0.91054 1.03027 1.98429 1.66621 1.34831 1.96439 1.72586 1.30293 0.95307 1.08846 1.73147 1.03845 1.21866 1.17839 0.96451 0.92837 0.93631 0.92984 0.87213 0.88230 0.78087 0.76652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 7.71 8.04 127.77 1.03 8.74 16 2 N -0.62 -32.05 3.20 -721.60 -2.31 -34.36 16 3 C -0.30 -17.26 9.38 84.03 0.79 -16.47 16 4 H 0.07 3.82 7.86 -2.91 -0.02 3.80 16 5 C -0.02 -1.38 5.06 84.86 0.43 -0.95 16 6 N -0.92 -52.47 10.84 21.65 0.23 -52.23 16 7 Si 0.98 44.21 29.57 68.60 2.03 46.24 16 8 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 C 0.50 23.04 2.34 86.38 0.20 23.24 16 12 F -0.22 -10.74 17.02 44.97 0.77 -9.97 16 13 F -0.21 -9.79 17.02 44.97 0.77 -9.03 16 14 C 0.06 2.15 3.66 71.98 0.26 2.42 16 15 O -0.29 -9.55 10.02 -90.39 -0.91 -10.45 16 16 C 0.25 6.80 7.57 84.87 0.64 7.45 16 17 C -0.11 -1.75 10.15 22.61 0.23 -1.52 16 18 C -0.05 -0.63 9.99 22.52 0.23 -0.41 16 19 C 0.08 1.47 7.36 84.84 0.62 2.10 16 20 Cl 0.01 0.14 29.13 -2.72 -0.08 0.06 16 21 N -0.23 -6.23 11.48 -49.85 -0.57 -6.80 16 22 N -0.31 -9.45 10.40 -170.23 -1.77 -11.22 16 23 H 0.02 0.86 7.85 -2.39 -0.02 0.84 16 24 H 0.05 2.74 6.78 -2.39 -0.02 2.72 16 25 H 0.05 1.80 5.99 -2.39 -0.01 1.78 16 26 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 27 H 0.11 3.82 6.84 -2.38 -0.02 3.80 16 28 H 0.10 3.71 7.75 -2.39 -0.02 3.69 16 29 H 0.20 1.95 8.06 -2.91 -0.02 1.93 16 30 H 0.22 0.55 8.06 -2.91 -0.02 0.52 16 Total: -1.00 -68.62 291.07 3.78 -64.83 By element: Atomic # 1 Polarization: -2.85 SS G_CDS: 1.20 Total: -1.65 kcal Atomic # 6 Polarization: 20.15 SS G_CDS: 4.43 Total: 24.59 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -4.42 Total: -104.62 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.91 Total: -10.45 kcal Atomic # 9 Polarization: -20.53 SS G_CDS: 1.53 Total: -19.00 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -0.08 Total: 0.06 kcal Total: -68.62 3.78 -64.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165092088.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.060 kcal (2) G-P(sol) polarization free energy of solvation -68.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds