Wall clock time and date at job start Tue Mar 31 2020 06:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36935 * 119.99945 * 2 1 4 4 H 1.08003 * 120.00074 * 205.40133 * 3 2 1 5 5 C 1.38812 * 120.00099 * 25.40552 * 3 2 1 6 6 N 1.31620 * 120.00128 * 11.61815 * 5 3 2 7 7 Si 1.86801 * 119.99841 * 191.61655 * 5 3 2 8 8 H 1.48498 * 109.47328 * 89.99867 * 7 5 3 9 9 H 1.48499 * 109.47348 * 210.00257 * 7 5 3 10 10 H 1.48499 * 109.47032 * 329.99816 * 7 5 3 11 11 C 1.46499 * 119.99835 * 179.97438 * 2 1 3 12 12 F 1.39896 * 109.47495 * 240.00087 * 11 2 1 13 13 F 1.39894 * 109.47067 * 119.99929 * 11 2 1 14 14 C 1.52999 * 109.46921 * 0.02562 * 11 2 1 15 15 O 1.42901 * 109.46990 * 179.97438 * 14 11 2 16 16 C 1.35684 * 116.99915 * 179.97438 * 15 14 11 17 17 C 1.39081 * 120.06064 * 179.97438 * 16 15 14 18 18 N 1.31988 * 119.95063 * 180.02562 * 17 16 15 19 19 C 1.32204 * 120.07830 * 0.02562 * 18 17 16 20 20 C 1.38370 * 120.12669 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 119.97262 * 180.02562 * 20 19 18 22 22 N 1.32325 * 120.05078 * 359.97396 * 20 19 18 23 23 H 1.08997 * 109.47155 * 264.89159 * 1 2 3 24 24 H 1.09001 * 109.46814 * 24.88502 * 1 2 3 25 25 H 1.08994 * 109.47431 * 144.88186 * 1 2 3 26 26 H 0.96998 * 119.99691 * 179.97438 * 6 5 3 27 27 H 1.08996 * 109.47733 * 59.99770 * 14 11 2 28 28 H 1.09000 * 109.47103 * 299.99736 * 14 11 2 29 29 H 1.08005 * 120.02434 * 0.03678 * 17 16 15 30 30 H 1.07999 * 119.93541 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1515 1.2311 -0.4012 5 6 1.5564 2.3299 0.5157 6 7 0.4402 2.2378 1.2071 7 14 2.3421 4.0001 0.2286 8 1 1.8085 4.5892 -1.0258 9 1 2.0284 4.8975 1.3694 10 1 3.8141 3.8415 0.1139 11 6 2.1975 -1.2687 0.0006 12 9 3.0018 -1.3425 1.1428 13 9 3.0018 -1.3434 -1.1416 14 6 1.2032 -2.4316 0.0004 15 8 1.9177 -3.6692 0.0004 16 6 1.1786 -4.8071 0.0008 17 6 1.8087 -6.0470 0.0003 18 7 1.0876 -7.1525 0.0002 19 6 -0.2326 -7.0825 0.0001 20 6 -0.8627 -5.8506 -0.0004 21 17 -2.5965 -5.7634 0.0002 22 7 -0.1448 -4.7391 -0.0003 23 1 -0.3633 -0.0915 1.0236 24 1 -0.3633 0.9323 -0.4325 25 1 -0.3634 -0.8405 -0.5911 26 1 0.0258 3.0373 1.5678 27 1 0.5769 -2.3741 -0.8897 28 1 0.5763 -2.3736 0.8902 29 1 2.8872 -6.1052 0.0001 30 1 -0.8203 -7.9886 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165094208.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:46 Heat of formation + Delta-G solvation = -77.828835 kcal Electronic energy + Delta-G solvation = -21277.572017 eV Core-core repulsion = 17385.002768 eV Total energy + Delta-G solvation = -3892.569248 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.048 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.67433 -47.81766 -42.54682 -39.87339 -37.94297 -37.47016 -35.32531 -33.73875 -32.17667 -30.09432 -28.16075 -26.48073 -25.53217 -25.02225 -22.32769 -20.30507 -19.48938 -19.05703 -18.80575 -18.11864 -17.86452 -17.38980 -17.24253 -16.62891 -16.26617 -15.66165 -15.19204 -14.97820 -14.71190 -14.31421 -14.21745 -14.17214 -14.03000 -13.43444 -13.31842 -13.10996 -12.99798 -12.85924 -12.66405 -12.53981 -12.34620 -12.17021 -11.84569 -11.80153 -10.88007 -10.65691 -9.90971 -9.43228 -8.09952 -5.71664 -0.56586 -0.23784 0.44125 1.20174 1.45379 1.46321 1.56548 2.30626 2.31465 2.55586 2.78641 3.00482 3.08307 3.11332 3.21956 3.51814 3.63372 3.88124 4.10715 4.27133 4.39973 4.63355 4.77117 5.09143 5.36893 5.50163 5.56844 5.77837 6.00824 6.34661 6.81486 7.34805 7.80908 8.95753 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.026461 B = 0.004103 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.896296 B = 6822.550423 C = 7643.065026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.617 5.617 3 C -0.302 4.302 4 H 0.066 0.934 5 C -0.024 4.024 6 N -0.922 5.922 7 Si 0.983 3.017 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.272 1.272 11 C 0.502 3.498 12 F -0.220 7.220 13 F -0.213 7.213 14 C 0.063 3.937 15 O -0.294 6.294 16 C 0.283 3.717 17 C 0.058 3.942 18 N -0.392 5.392 19 C 0.043 3.957 20 C 0.156 3.844 21 Cl 0.001 6.999 22 N -0.515 5.515 23 H 0.017 0.983 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.261 0.739 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.211 0.789 30 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.186 -18.376 -2.874 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.348 5.348 3 C -0.430 4.430 4 H 0.084 0.916 5 C -0.222 4.222 6 N -0.564 5.564 7 Si 0.809 3.191 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.197 1.197 11 C 0.377 3.623 12 F -0.202 7.202 13 F -0.195 7.195 14 C -0.015 4.015 15 O -0.198 6.198 16 C 0.100 3.900 17 C -0.105 4.105 18 N -0.106 5.106 19 C -0.116 4.116 20 C -0.010 4.010 21 Cl 0.030 6.970 22 N -0.248 5.248 23 H 0.035 0.965 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.126 0.874 28 H 0.116 0.884 29 H 0.227 0.773 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -4.127 -18.198 -2.790 18.868 hybrid contribution 0.072 1.480 0.150 1.489 sum -4.055 -16.718 -2.639 17.404 Atomic orbital electron populations 1.20941 0.79156 0.99528 0.98286 1.45191 1.04067 0.99888 1.85668 1.19357 1.01040 0.86072 1.36563 0.91588 1.25939 0.98083 1.02441 0.95760 1.70178 1.20718 1.29459 1.36041 0.85061 0.78338 0.78167 0.77550 1.19997 1.20973 1.19671 1.19934 0.80468 0.89104 0.72762 1.93000 1.77413 1.96716 1.53040 1.92995 1.77082 1.96697 1.52742 1.23411 0.92922 0.78923 1.06232 1.86270 1.33861 1.12312 1.87376 1.21117 0.86641 0.88368 0.93840 1.23448 1.03628 0.83820 0.99578 1.68760 1.06370 1.28296 1.07200 1.24015 0.91004 0.97700 0.98885 1.22917 0.89339 0.90057 0.98718 1.98448 1.04074 1.98493 1.96008 1.67296 1.06642 1.33920 1.16939 0.96463 0.92894 0.93708 0.93004 0.87362 0.88368 0.77261 0.76436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 7.66 8.04 127.77 1.03 8.69 16 2 N -0.62 -31.82 3.20 -721.60 -2.31 -34.13 16 3 C -0.30 -17.03 9.38 84.03 0.79 -16.24 16 4 H 0.07 3.78 7.86 -2.91 -0.02 3.76 16 5 C -0.02 -1.33 5.06 84.86 0.43 -0.90 16 6 N -0.92 -52.10 10.84 21.65 0.23 -51.86 16 7 Si 0.98 44.06 29.57 68.60 2.03 46.09 16 8 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 C 0.50 22.89 2.34 86.38 0.20 23.09 16 12 F -0.22 -10.74 17.02 44.97 0.77 -9.97 16 13 F -0.21 -9.81 17.01 44.97 0.77 -9.04 16 14 C 0.06 2.27 3.66 71.98 0.26 2.54 16 15 O -0.29 -9.55 10.02 -90.02 -0.90 -10.46 16 16 C 0.28 7.62 7.49 84.79 0.64 8.26 16 17 C 0.06 1.21 11.18 84.87 0.95 2.16 16 18 N -0.39 -7.51 10.49 -194.71 -2.04 -9.55 16 19 C 0.04 0.71 11.00 84.67 0.93 1.64 16 20 C 0.16 3.29 7.28 84.65 0.62 3.91 16 21 Cl 0.00 0.03 29.13 -2.72 -0.08 -0.05 16 22 N -0.52 -13.97 9.38 -299.04 -2.81 -16.78 16 23 H 0.02 0.84 7.85 -2.39 -0.02 0.82 16 24 H 0.05 2.68 6.78 -2.39 -0.02 2.66 16 25 H 0.04 1.73 5.99 -2.39 -0.01 1.72 16 26 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 27 H 0.11 3.69 6.84 -2.39 -0.02 3.67 16 28 H 0.10 3.59 7.75 -2.39 -0.02 3.57 16 29 H 0.21 3.24 8.06 -2.91 -0.02 3.22 16 30 H 0.22 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -64.99 290.90 2.69 -62.30 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: 1.20 Total: 0.32 kcal Atomic # 6 Polarization: 27.30 SS G_CDS: 5.84 Total: 33.14 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -6.92 Total: -112.32 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.90 Total: -10.46 kcal Atomic # 9 Polarization: -20.55 SS G_CDS: 1.53 Total: -19.02 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.08 Total: -0.05 kcal Total: -64.99 2.69 -62.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165094208.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.531 kcal (2) G-P(sol) polarization free energy of solvation -64.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds