Wall clock time and date at job start Tue Mar 31 2020 06:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86791 * 120.00072 * 2 1 4 4 H 1.48498 * 109.47320 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47226 * 120.00298 * 3 2 1 6 6 H 1.48501 * 109.47122 * 239.99986 * 3 2 1 7 7 C 1.39927 * 119.99482 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99632 * 154.64919 * 7 2 1 9 9 C 1.41037 * 120.00401 * 334.64869 * 7 2 1 10 10 C 1.40729 * 120.30486 * 334.27624 * 9 7 2 11 11 C 1.36458 * 119.94681 * 179.74253 * 10 9 7 12 12 C 1.38888 * 120.60051 * 0.56105 * 11 10 9 13 13 C 1.50697 * 119.68969 * 179.71609 * 12 11 10 14 14 F 1.39899 * 109.47114 * 269.97945 * 13 12 11 15 15 F 1.39899 * 109.47158 * 29.97874 * 13 12 11 16 16 F 1.39901 * 109.47326 * 149.98395 * 13 12 11 17 17 C 1.38169 * 120.62524 * 359.69476 * 12 11 10 18 18 C 1.38745 * 120.02500 * 0.02562 * 17 12 11 19 19 N 1.38735 * 120.29260 * 179.97438 * 18 17 12 20 20 C 1.46497 * 120.00020 * 0.02562 * 19 18 17 21 21 C 1.52999 * 109.47150 * 180.02562 * 20 19 18 22 22 Cl 1.80303 * 109.47258 * 179.97438 * 21 20 19 23 23 H 0.96994 * 120.00115 * 174.18364 * 1 2 3 24 24 H 1.07997 * 120.02545 * 0.02562 * 10 9 7 25 25 H 1.08005 * 119.69747 * 180.28068 * 11 10 9 26 26 H 1.08001 * 119.98536 * 180.02562 * 17 12 11 27 27 H 0.97001 * 120.00152 * 180.02562 * 19 18 17 28 28 H 1.08999 * 109.47042 * 299.99476 * 20 19 18 29 29 H 1.09001 * 109.47514 * 59.99938 * 20 19 18 30 30 H 1.09008 * 109.46876 * 299.99878 * 21 20 19 31 31 H 1.09002 * 109.47794 * 59.99426 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 1.2779 2.7464 -0.0006 5 1 3.0966 1.6963 1.2125 6 1 3.0966 1.6963 -1.2125 7 6 2.0084 -1.2119 0.0005 8 1 3.0104 -1.2571 -0.3999 9 6 1.4050 -2.3742 0.5240 10 6 0.3945 -2.2726 1.4982 11 6 -0.1879 -3.4019 1.9958 12 6 0.2150 -4.6569 1.5583 13 6 -0.4378 -5.8906 2.1264 14 9 0.2693 -6.3138 3.2569 15 9 -1.7577 -5.5967 2.4850 16 9 -0.4309 -6.9068 1.1648 17 6 1.2085 -4.7851 0.6066 18 6 1.8144 -3.6539 0.0789 19 7 2.8129 -3.7762 -0.8765 20 6 3.2315 -5.1038 -1.3329 21 6 4.3385 -4.9580 -2.3789 22 17 4.8542 -6.5921 -2.9400 23 1 -0.4850 -0.8357 -0.0851 24 1 0.0771 -1.3016 1.8483 25 1 -0.9663 -3.3190 2.7401 26 1 1.5136 -5.7661 0.2735 27 1 3.2339 -2.9826 -1.2424 28 1 3.6063 -5.6778 -0.4855 29 1 2.3799 -5.6216 -1.7743 30 1 3.9641 -4.3838 -3.2265 31 1 5.1900 -4.4404 -1.9372 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167816142.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:27 Heat of formation + Delta-G solvation = -159.464216 kcal Electronic energy + Delta-G solvation = -21117.014511 eV Core-core repulsion = 17200.985325 eV Total energy + Delta-G solvation = -3916.029186 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.049 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.38287 -46.92438 -46.85578 -38.56779 -36.37814 -35.14571 -34.24792 -30.98253 -29.86677 -27.36257 -26.60452 -23.80421 -22.96328 -20.78608 -20.51279 -18.15557 -17.72772 -17.60323 -17.55278 -15.62569 -15.35520 -15.07227 -14.78762 -14.14489 -13.90312 -13.79387 -13.41912 -13.37654 -13.27420 -13.09545 -13.08000 -12.84657 -12.64819 -12.31694 -12.18971 -11.81620 -11.49986 -11.19717 -10.79461 -10.58432 -10.54746 -10.48039 -10.10324 -9.75553 -9.36431 -9.19977 -7.96226 -7.50087 -6.74389 -4.57835 2.07565 2.29110 2.78380 3.01498 3.08000 3.22529 3.56778 3.83957 4.24306 4.32314 4.73704 4.81594 4.86510 4.96485 5.06466 5.24328 5.42742 5.86446 5.86992 5.98208 6.12366 6.56039 6.70484 6.93403 7.10773 7.18826 7.48969 7.58253 7.76005 7.89934 8.06582 8.47193 8.52177 8.68723 9.81658 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.008458 B = 0.007325 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3309.873580 B = 3821.423579 C = 6849.434930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.039 3.961 3 Si 1.064 2.936 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.505 4.505 8 H 0.077 0.923 9 C 0.081 3.919 10 C -0.211 4.211 11 C -0.062 4.062 12 C -0.289 4.289 13 C 0.515 3.485 14 F -0.195 7.195 15 F -0.192 7.192 16 F -0.194 7.194 17 C -0.120 4.120 18 C 0.107 3.893 19 N -0.747 5.747 20 C 0.125 3.875 21 C -0.039 4.039 22 Cl -0.180 7.180 23 H 0.303 0.697 24 H 0.114 0.886 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.397 0.603 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.915 -4.669 -2.356 7.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.185 4.185 3 Si 0.887 3.113 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.533 4.533 8 H 0.095 0.905 9 C 0.076 3.924 10 C -0.231 4.231 11 C -0.082 4.082 12 C -0.292 4.292 13 C 0.462 3.538 14 F -0.177 7.177 15 F -0.174 7.174 16 F -0.175 7.175 17 C -0.144 4.144 18 C 0.009 3.991 19 N -0.384 5.384 20 C -0.001 4.001 21 C -0.102 4.102 22 Cl -0.154 7.154 23 H 0.117 0.883 24 H 0.132 0.868 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.233 0.767 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.680 -3.360 -2.357 6.225 hybrid contribution 0.196 -1.809 -0.107 1.822 sum 4.877 -5.169 -2.463 7.521 Atomic orbital electron populations 1.70470 1.08192 1.34736 1.26962 1.27050 0.95631 1.04333 0.91508 0.83630 0.75728 0.73835 0.78082 1.19652 1.19823 1.20084 1.20372 1.02610 0.94120 1.36149 0.90485 1.17462 0.92668 0.90716 0.91531 1.20542 1.03910 0.97080 1.01593 1.19939 0.98313 0.91384 0.98586 1.18695 1.08854 0.90476 1.11219 1.18548 0.75817 0.84361 0.75085 1.93137 1.78846 1.91602 1.54088 1.93094 1.38473 1.93445 1.92387 1.93088 1.96403 1.63747 1.64294 1.19661 0.98930 0.96198 0.99632 1.17496 0.94444 0.93116 0.94076 1.43718 1.42829 1.05161 1.46663 1.21291 0.95513 0.87548 0.95714 1.24457 1.00470 0.84808 1.00510 1.98712 1.92292 1.33250 1.91102 0.88295 0.86840 0.88358 0.88023 0.76687 0.92252 0.92207 0.88434 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.95 12.32 55.55 0.68 -18.27 16 2 C 0.04 0.87 4.94 -17.32 -0.09 0.79 16 3 Si 1.06 19.38 30.00 -169.99 -5.10 14.28 16 4 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.27 -4.86 7.11 56.52 0.40 -4.45 16 6 H -0.28 -4.71 7.11 56.52 0.40 -4.31 16 7 C -0.51 -11.63 8.44 -37.89 -0.32 -11.95 16 8 H 0.08 1.66 6.75 -52.48 -0.35 1.31 16 9 C 0.08 1.92 5.31 -106.64 -0.57 1.35 16 10 C -0.21 -4.97 7.89 -39.28 -0.31 -5.28 16 11 C -0.06 -1.39 9.31 -39.98 -0.37 -1.76 16 12 C -0.29 -6.27 5.47 -104.41 -0.57 -6.84 16 13 C 0.52 10.25 3.36 36.00 0.12 10.37 16 14 F -0.20 -3.81 17.30 2.25 0.04 -3.77 16 15 F -0.19 -3.75 16.43 2.25 0.04 -3.71 16 16 F -0.19 -3.74 16.43 2.25 0.04 -3.70 16 17 C -0.12 -2.56 8.64 -39.42 -0.34 -2.90 16 18 C 0.11 2.32 6.68 -83.29 -0.56 1.77 16 19 N -0.75 -13.31 5.63 -58.20 -0.33 -13.64 16 20 C 0.13 1.82 5.03 -4.04 -0.02 1.80 16 21 C -0.04 -0.44 6.77 37.16 0.25 -0.19 16 22 Cl -0.18 -2.14 29.15 -51.86 -1.51 -3.65 16 23 H 0.30 7.59 6.69 -40.82 -0.27 7.32 16 24 H 0.11 2.75 6.50 -52.49 -0.34 2.41 16 25 H 0.10 2.02 7.58 -52.48 -0.40 1.62 16 26 H 0.10 2.01 6.25 -52.49 -0.33 1.68 16 27 H 0.40 6.79 6.70 -40.82 -0.27 6.51 16 28 H 0.06 0.89 7.94 -51.93 -0.41 0.47 16 29 H 0.06 0.91 7.95 -51.93 -0.41 0.50 16 30 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 293.07 15.07 4.42 4.42 Total: -1.00 -24.36 293.07 -6.93 -31.29 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -2.43 Total: 9.59 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -2.77 Total: -12.84 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.36 Total: -31.90 kcal Atomic # 9 Polarization: -11.30 SS G_CDS: 0.11 Total: -11.18 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.10 Total: 14.28 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -1.51 Total: -3.65 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -24.36 -6.93 -31.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167816142.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.176 kcal (2) G-P(sol) polarization free energy of solvation -24.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds