Wall clock time and date at job start Tue Mar 31 2020 06:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86791 * 120.00072 * 2 1 4 4 H 1.48498 * 109.47320 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47226 * 120.00298 * 3 2 1 6 6 H 1.48501 * 109.47122 * 239.99986 * 3 2 1 7 7 C 1.39927 * 119.99482 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99632 * 154.64919 * 7 2 1 9 9 C 1.41037 * 120.00401 * 334.64869 * 7 2 1 10 10 C 1.40729 * 120.30486 * 334.27624 * 9 7 2 11 11 C 1.36458 * 119.94681 * 179.74253 * 10 9 7 12 12 C 1.38888 * 120.60051 * 0.56105 * 11 10 9 13 13 C 1.50697 * 119.68969 * 179.71609 * 12 11 10 14 14 F 1.39899 * 109.47114 * 269.97945 * 13 12 11 15 15 F 1.39899 * 109.47158 * 29.97874 * 13 12 11 16 16 F 1.39901 * 109.47326 * 149.98395 * 13 12 11 17 17 C 1.38169 * 120.62524 * 359.69476 * 12 11 10 18 18 C 1.38745 * 120.02500 * 0.02562 * 17 12 11 19 19 N 1.38735 * 120.29260 * 179.97438 * 18 17 12 20 20 C 1.46497 * 120.00020 * 0.02562 * 19 18 17 21 21 C 1.52999 * 109.47150 * 180.02562 * 20 19 18 22 22 Cl 1.80303 * 109.47258 * 179.97438 * 21 20 19 23 23 H 0.96994 * 120.00115 * 174.18364 * 1 2 3 24 24 H 1.07997 * 120.02545 * 0.02562 * 10 9 7 25 25 H 1.08005 * 119.69747 * 180.28068 * 11 10 9 26 26 H 1.08001 * 119.98536 * 180.02562 * 17 12 11 27 27 H 0.97001 * 120.00152 * 180.02562 * 19 18 17 28 28 H 1.08999 * 109.47042 * 299.99476 * 20 19 18 29 29 H 1.09001 * 109.47514 * 59.99938 * 20 19 18 30 30 H 1.09008 * 109.46876 * 299.99878 * 21 20 19 31 31 H 1.09002 * 109.47794 * 59.99426 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 1.2779 2.7464 -0.0006 5 1 3.0966 1.6963 1.2125 6 1 3.0966 1.6963 -1.2125 7 6 2.0084 -1.2119 0.0005 8 1 3.0104 -1.2571 -0.3999 9 6 1.4050 -2.3742 0.5240 10 6 0.3945 -2.2726 1.4982 11 6 -0.1879 -3.4019 1.9958 12 6 0.2150 -4.6569 1.5583 13 6 -0.4378 -5.8906 2.1264 14 9 0.2693 -6.3138 3.2569 15 9 -1.7577 -5.5967 2.4850 16 9 -0.4309 -6.9068 1.1648 17 6 1.2085 -4.7851 0.6066 18 6 1.8144 -3.6539 0.0789 19 7 2.8129 -3.7762 -0.8765 20 6 3.2315 -5.1038 -1.3329 21 6 4.3385 -4.9580 -2.3789 22 17 4.8542 -6.5921 -2.9400 23 1 -0.4850 -0.8357 -0.0851 24 1 0.0771 -1.3016 1.8483 25 1 -0.9663 -3.3190 2.7401 26 1 1.5136 -5.7661 0.2735 27 1 3.2339 -2.9826 -1.2424 28 1 3.6063 -5.6778 -0.4855 29 1 2.3799 -5.6216 -1.7743 30 1 3.9641 -4.3838 -3.2265 31 1 5.1900 -4.4404 -1.9372 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167816142.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:26 Heat of formation + Delta-G solvation = -170.183338 kcal Electronic energy + Delta-G solvation = -21117.479327 eV Core-core repulsion = 17200.985325 eV Total energy + Delta-G solvation = -3916.494002 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.049 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.97953 -48.51073 -48.44754 -40.22927 -37.48127 -36.46392 -35.95715 -32.46273 -31.48764 -28.87379 -28.26910 -25.45851 -24.27510 -22.44173 -22.10051 -19.86232 -19.32358 -19.22198 -19.14041 -17.13211 -16.52263 -16.46436 -16.42379 -15.59324 -15.46215 -15.38246 -14.98261 -14.93778 -14.78867 -14.66262 -14.60363 -14.31133 -14.01337 -13.83965 -13.61717 -13.28444 -13.03711 -12.70520 -12.39555 -11.96593 -11.83597 -11.55678 -11.43535 -11.41277 -10.97187 -10.81652 -9.73448 -9.27463 -8.37048 -6.33739 0.55207 1.03368 1.11184 1.55272 1.62618 1.81947 1.94271 2.33468 2.57745 2.90891 3.20409 3.34882 3.35859 3.65996 3.76232 3.89452 4.21903 4.32986 4.40126 4.73603 4.75278 4.84985 5.00319 5.23370 5.37693 5.44971 5.70001 5.81748 6.01297 6.16294 6.37434 6.80395 6.89347 7.10143 8.01700 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.008458 B = 0.007325 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3309.873580 B = 3821.423579 C = 6849.434930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.006 3.994 3 Si 1.113 2.887 4 H -0.279 1.279 5 H -0.266 1.266 6 H -0.253 1.253 7 C -0.523 4.523 8 H 0.089 0.911 9 C 0.055 3.945 10 C -0.226 4.226 11 C -0.073 4.073 12 C -0.290 4.290 13 C 0.523 3.477 14 F -0.191 7.191 15 F -0.189 7.189 16 F -0.188 7.188 17 C -0.133 4.133 18 C 0.111 3.889 19 N -0.742 5.742 20 C 0.125 3.875 21 C -0.029 4.029 22 Cl -0.181 7.181 23 H 0.287 0.713 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.401 0.599 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.110 0.890 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.306 -5.040 -2.993 8.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.212 4.212 3 Si 0.931 3.069 4 H -0.204 1.204 5 H -0.191 1.191 6 H -0.177 1.177 7 C -0.550 4.550 8 H 0.107 0.893 9 C 0.050 3.950 10 C -0.247 4.247 11 C -0.093 4.093 12 C -0.293 4.293 13 C 0.469 3.531 14 F -0.172 7.172 15 F -0.171 7.171 16 F -0.169 7.169 17 C -0.157 4.157 18 C 0.010 3.990 19 N -0.377 5.377 20 C 0.000 4.000 21 C -0.092 4.092 22 Cl -0.155 7.155 23 H 0.100 0.900 24 H 0.116 0.884 25 H 0.127 0.873 26 H 0.135 0.865 27 H 0.237 0.763 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.128 0.872 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.095 -3.766 -3.016 7.774 hybrid contribution -0.242 -1.826 0.100 1.845 sum 5.853 -5.592 -2.916 8.604 Atomic orbital electron populations 1.70578 1.09144 1.33689 1.29566 1.28340 0.95541 1.07358 0.89975 0.83028 0.74772 0.69938 0.79204 1.20358 1.19054 1.17666 1.20593 1.03156 0.94429 1.36816 0.89327 1.17770 0.93214 0.91971 0.92071 1.20511 1.04866 0.96853 1.02440 1.20065 0.98761 0.91426 0.99082 1.18951 1.08601 0.90976 1.10813 1.18250 0.75804 0.83877 0.75165 1.93144 1.78805 1.91478 1.53817 1.93103 1.38173 1.93442 1.92340 1.93099 1.96381 1.63327 1.64118 1.19864 0.99129 0.96868 0.99866 1.17642 0.94672 0.92527 0.94177 1.43794 1.41626 1.06789 1.45510 1.21390 0.96410 0.85708 0.96528 1.24379 0.99953 0.84825 1.00086 1.98719 1.92186 1.33545 1.91016 0.90018 0.88414 0.87301 0.86468 0.76261 0.92359 0.92671 0.87180 0.86896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.07 12.32 21.83 0.27 -39.80 16 2 C 0.01 0.27 4.94 85.24 0.42 0.69 16 3 Si 1.11 38.30 30.00 68.60 2.06 40.36 16 4 H -0.28 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.27 -8.78 7.11 99.48 0.71 -8.07 16 6 H -0.25 -7.73 7.11 99.48 0.71 -7.02 16 7 C -0.52 -24.00 8.44 23.37 0.20 -23.80 16 8 H 0.09 3.73 6.75 -2.91 -0.02 3.71 16 9 C 0.06 2.61 5.31 -21.17 -0.11 2.50 16 10 C -0.23 -10.90 7.89 22.46 0.18 -10.73 16 11 C -0.07 -3.29 9.31 22.01 0.20 -3.08 16 12 C -0.29 -12.38 5.47 -19.73 -0.11 -12.49 16 13 C 0.52 20.06 3.36 71.24 0.24 20.30 16 14 F -0.19 -7.15 17.30 44.97 0.78 -6.37 16 15 F -0.19 -7.12 16.43 44.97 0.74 -6.38 16 16 F -0.19 -6.90 16.43 44.97 0.74 -6.16 16 17 C -0.13 -5.53 8.64 22.37 0.19 -5.34 16 18 C 0.11 4.71 6.68 38.99 0.26 4.97 16 19 N -0.74 -25.32 5.63 -338.06 -1.90 -27.23 16 20 C 0.12 3.37 5.03 86.38 0.43 3.80 16 21 C -0.03 -0.59 6.77 71.98 0.49 -0.10 16 22 Cl -0.18 -3.90 29.15 -2.72 -0.08 -3.98 16 23 H 0.29 14.96 6.69 -92.71 -0.62 14.34 16 24 H 0.10 4.94 6.50 -2.91 -0.02 4.92 16 25 H 0.11 4.50 7.58 -2.91 -0.02 4.48 16 26 H 0.12 4.44 6.25 -2.91 -0.02 4.42 16 27 H 0.40 13.03 6.70 -92.71 -0.62 12.41 16 28 H 0.06 1.62 7.94 -2.39 -0.02 1.60 16 29 H 0.06 1.57 7.95 -2.39 -0.02 1.55 16 30 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -51.42 293.07 5.72 -45.70 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.72 Total: 27.13 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 2.39 Total: -23.28 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -1.63 Total: -67.02 kcal Atomic # 9 Polarization: -21.17 SS G_CDS: 2.26 Total: -18.92 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.06 Total: 40.36 kcal Atomic # 17 Polarization: -3.90 SS G_CDS: -0.08 Total: -3.98 kcal Total: -51.42 5.72 -45.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167816142.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.480 kcal (2) G-P(sol) polarization free energy of solvation -51.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds