Wall clock time and date at job start Tue Mar 31 2020 07:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86792 * 120.00509 * 2 1 4 4 H 1.48500 * 109.47208 * 274.39923 * 3 2 1 5 5 H 1.48504 * 109.47109 * 34.39884 * 3 2 1 6 6 H 1.48504 * 109.47176 * 154.39783 * 3 2 1 7 7 C 1.39917 * 119.99471 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99785 * 339.16287 * 7 2 1 9 9 C 1.41288 * 119.99581 * 159.16105 * 7 2 1 10 10 C 1.40618 * 120.22793 * 329.33645 * 9 7 2 11 11 C 1.38206 * 119.70490 * 179.97438 * 10 9 7 12 12 N 1.39729 * 119.91705 * 180.02562 * 11 10 9 13 13 C 1.40716 * 119.99866 * 205.23313 * 12 11 10 14 14 C 1.33804 * 122.61952 * 215.08197 * 13 12 11 15 15 S 1.75870 * 109.60285 * 180.02562 * 14 13 12 16 16 C 1.75857 * 91.04554 * 359.97438 * 15 14 13 17 17 C 1.50700 * 125.14907 * 179.97438 * 16 15 14 18 18 O 1.42900 * 109.47311 * 270.02744 * 17 16 15 19 19 C 1.33391 * 109.70695 * 0.22900 * 16 15 14 20 20 C 1.39454 * 120.16421 * 0.28193 * 11 10 9 21 21 C 1.38349 * 120.46016 * 359.43568 * 20 11 10 22 22 C 1.38018 * 120.29125 * 0.56578 * 21 20 11 23 23 F 1.35104 * 120.08516 * 179.69716 * 22 21 20 24 24 H 0.97010 * 119.99379 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.14543 * 0.02562 * 10 9 7 26 26 H 0.96998 * 119.99882 * 25.22751 * 12 11 10 27 27 H 1.07996 * 125.19218 * 359.97438 * 14 13 12 28 28 H 1.08993 * 109.47241 * 150.02228 * 17 16 15 29 29 H 1.09000 * 109.46851 * 30.02229 * 17 16 15 30 30 H 0.96705 * 114.00279 * 179.97438 * 18 17 16 31 31 H 1.08004 * 122.55545 * 179.76490 * 19 16 15 32 32 H 1.08000 * 119.77204 * 179.72564 * 20 11 10 33 33 H 1.07999 * 119.85207 * 180.27622 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 2.3973 2.1000 -1.3959 5 1 1.4898 2.6240 0.7910 6 1 3.5837 1.4148 0.6050 7 6 2.0081 -1.2118 0.0005 8 1 1.5209 -2.1163 0.3337 9 6 3.3516 -1.2520 -0.4347 10 6 3.8043 -0.3547 -1.4182 11 6 5.1209 -0.4032 -1.8357 12 7 5.5756 0.4866 -2.8123 13 6 6.6798 0.1459 -3.6153 14 6 7.5729 1.0497 -4.0347 15 16 8.8020 0.2558 -5.0104 16 6 8.0167 -1.3022 -4.7900 17 6 8.5002 -2.6071 -5.3683 18 8 7.9146 -2.8031 -6.6570 19 6 6.9250 -1.1532 -4.0380 20 6 5.9954 -1.3417 -1.2885 21 6 5.5588 -2.2239 -0.3163 22 6 4.2479 -2.1921 0.1145 23 9 3.8245 -3.0597 1.0597 24 1 -0.4850 0.8402 -0.0004 25 1 3.1263 0.3697 -1.8449 26 1 5.1301 1.3392 -2.9367 27 1 7.5430 2.1054 -3.8091 28 1 8.2112 -3.4258 -4.7094 29 1 9.5859 -2.5825 -5.4626 30 1 8.1824 -3.6254 -7.0898 31 1 6.2823 -1.9808 -3.7761 32 1 7.0218 -1.3769 -1.6225 33 1 6.2455 -2.9437 0.1039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176376167.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:05 Heat of formation + Delta-G solvation = -38.241239 kcal Electronic energy + Delta-G solvation = -20248.392651 eV Core-core repulsion = 16893.893324 eV Total energy + Delta-G solvation = -3354.499327 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.063 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.32015 -39.29788 -37.53942 -36.66762 -34.13796 -33.26767 -30.63050 -30.33780 -27.43680 -26.13215 -25.21429 -22.54373 -21.75759 -20.47298 -19.12026 -17.84422 -17.63951 -16.90920 -16.67643 -16.32273 -15.55139 -14.95032 -14.79294 -14.52800 -14.11941 -13.93468 -13.44736 -13.11183 -12.89917 -12.78589 -12.56920 -12.08321 -12.04299 -11.77331 -11.62369 -11.53590 -10.95874 -10.85715 -10.76283 -10.22584 -10.11388 -9.81901 -9.75538 -9.19659 -8.60788 -8.04980 -7.86523 -7.09734 -6.62447 -4.61457 1.01591 1.70536 2.06680 2.33958 2.43740 2.92410 3.01845 3.14220 3.22909 3.86818 3.87499 4.27965 4.35152 4.86780 4.98974 5.17034 5.22399 5.33000 5.66197 5.72466 5.79791 6.01313 6.17940 6.21249 6.34637 6.44007 6.61406 6.87213 6.99357 7.24265 7.32769 7.40101 7.54662 7.70478 8.03281 8.11395 8.25646 8.51405 8.62815 9.91980 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.004561 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.188663 B = 6138.197456 C = 6851.155416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.087 3.913 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.244 1.244 7 C -0.436 4.436 8 H 0.097 0.903 9 C 0.093 3.907 10 C -0.265 4.265 11 C 0.211 3.789 12 N -0.682 5.682 13 C 0.180 3.820 14 C -0.284 4.284 15 S 0.102 5.898 16 C -0.179 4.179 17 C 0.151 3.849 18 O -0.566 6.566 19 C -0.114 4.114 20 C -0.261 4.261 21 C -0.086 4.086 22 C -0.035 4.035 23 F -0.159 7.159 24 H 0.288 0.712 25 H 0.111 0.889 26 H 0.404 0.596 27 H 0.161 0.839 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.381 0.619 31 H 0.149 0.851 32 H 0.106 0.894 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.570 0.295 -9.072 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.134 4.134 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.167 1.167 7 C -0.464 4.464 8 H 0.115 0.885 9 C 0.088 3.912 10 C -0.288 4.288 11 C 0.114 3.886 12 N -0.308 5.308 13 C 0.072 3.928 14 C -0.425 4.425 15 S 0.363 5.637 16 C -0.296 4.296 17 C 0.071 3.929 18 O -0.372 6.372 19 C -0.147 4.147 20 C -0.284 4.284 21 C -0.105 4.105 22 C -0.056 4.056 23 F -0.138 7.138 24 H 0.098 0.902 25 H 0.128 0.872 26 H 0.240 0.760 27 H 0.179 0.821 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.228 0.772 31 H 0.166 0.834 32 H 0.124 0.876 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 15.313 1.324 -9.608 18.126 hybrid contribution -1.144 0.070 0.765 1.378 sum 14.169 1.394 -8.842 16.760 Atomic orbital electron populations 1.69728 1.08196 1.30590 1.33234 1.26173 0.94689 1.01792 0.90718 0.86289 0.81432 0.79555 0.78963 1.19520 1.21429 1.16737 1.19409 0.93802 0.96868 1.36323 0.88519 1.17412 0.92820 0.90458 0.90511 1.20472 0.93532 1.08551 1.06238 1.17472 0.92149 0.90672 0.88276 1.42015 1.31682 1.20565 1.36518 1.16616 0.89537 0.92430 0.94245 1.24971 1.00430 1.03826 1.13232 1.83845 1.28538 0.98480 1.52822 1.23858 1.01507 0.98229 1.06009 1.20367 0.95740 0.92124 0.84637 1.86593 1.72987 1.45744 1.31840 1.20110 0.97843 0.97911 0.98876 1.19915 0.98330 1.04130 1.05982 1.20383 0.93851 0.98946 0.97352 1.17709 0.92925 0.98539 0.96381 1.91299 1.90914 1.68368 1.63211 0.90159 0.87177 0.76049 0.82108 0.91429 0.92565 0.77210 0.83377 0.87626 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.74 13.93 55.55 0.77 -19.96 16 2 C 0.09 2.24 5.36 -17.34 -0.09 2.15 16 3 Si 0.91 20.14 24.67 -169.99 -4.19 15.95 16 4 H -0.27 -5.63 6.66 56.52 0.38 -5.25 16 5 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.24 -5.57 7.06 56.52 0.40 -5.17 16 7 C -0.44 -11.82 9.22 -37.80 -0.35 -12.17 16 8 H 0.10 2.80 7.99 -52.49 -0.42 2.38 16 9 C 0.09 2.34 5.06 -106.78 -0.54 1.80 16 10 C -0.26 -6.14 7.21 -38.70 -0.28 -6.42 16 11 C 0.21 4.37 6.21 -83.82 -0.52 3.85 16 12 N -0.68 -12.04 5.54 -9.39 -0.05 -12.09 16 13 C 0.18 2.88 5.72 -85.12 -0.49 2.40 16 14 C -0.28 -3.95 11.19 29.18 0.33 -3.62 16 15 S 0.10 1.26 23.32 -107.50 -2.51 -1.25 16 16 C -0.18 -2.40 6.13 -36.00 -0.22 -2.62 16 17 C 0.15 1.57 7.53 36.01 0.27 1.84 16 18 O -0.57 -6.12 13.64 -35.23 -0.48 -6.60 16 19 C -0.11 -1.77 7.88 -41.07 -0.32 -2.10 16 20 C -0.26 -5.25 8.22 -39.09 -0.32 -5.57 16 21 C -0.09 -1.80 10.00 -39.62 -0.40 -2.19 16 22 C -0.03 -0.84 7.31 -38.61 -0.28 -1.12 16 23 F -0.16 -3.90 16.78 2.25 0.04 -3.86 16 24 H 0.29 6.74 8.30 -40.82 -0.34 6.41 16 25 H 0.11 2.53 5.01 -52.48 -0.26 2.27 16 26 H 0.40 6.48 8.90 -40.82 -0.36 6.11 16 27 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.38 2.04 9.12 45.56 0.42 2.46 16 31 H 0.15 2.45 7.28 -52.48 -0.38 2.07 16 32 H 0.11 1.95 6.44 -52.49 -0.34 1.61 16 33 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 301.18 15.07 4.54 4.54 Total: -1.00 -29.28 301.18 -7.30 -36.58 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -2.20 Total: 10.49 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -3.21 Total: -23.79 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.72 Total: -32.06 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.48 Total: -6.60 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.19 Total: 15.95 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.51 Total: -1.25 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.28 -7.30 -36.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176376167.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.662 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds