Wall clock time and date at job start Tue Mar 31 2020 07:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86792 * 120.00509 * 2 1 4 4 H 1.48500 * 109.47208 * 274.39923 * 3 2 1 5 5 H 1.48504 * 109.47109 * 34.39884 * 3 2 1 6 6 H 1.48504 * 109.47176 * 154.39783 * 3 2 1 7 7 C 1.39917 * 119.99471 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99785 * 339.16287 * 7 2 1 9 9 C 1.41288 * 119.99581 * 159.16105 * 7 2 1 10 10 C 1.40618 * 120.22793 * 329.33645 * 9 7 2 11 11 C 1.38206 * 119.70490 * 179.97438 * 10 9 7 12 12 N 1.39729 * 119.91705 * 180.02562 * 11 10 9 13 13 C 1.40716 * 119.99866 * 205.23313 * 12 11 10 14 14 C 1.33804 * 122.61952 * 215.08197 * 13 12 11 15 15 S 1.75870 * 109.60285 * 180.02562 * 14 13 12 16 16 C 1.75857 * 91.04554 * 359.97438 * 15 14 13 17 17 C 1.50700 * 125.14907 * 179.97438 * 16 15 14 18 18 O 1.42900 * 109.47311 * 270.02744 * 17 16 15 19 19 C 1.33391 * 109.70695 * 0.22900 * 16 15 14 20 20 C 1.39454 * 120.16421 * 0.28193 * 11 10 9 21 21 C 1.38349 * 120.46016 * 359.43568 * 20 11 10 22 22 C 1.38018 * 120.29125 * 0.56578 * 21 20 11 23 23 F 1.35104 * 120.08516 * 179.69716 * 22 21 20 24 24 H 0.97010 * 119.99379 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.14543 * 0.02562 * 10 9 7 26 26 H 0.96998 * 119.99882 * 25.22751 * 12 11 10 27 27 H 1.07996 * 125.19218 * 359.97438 * 14 13 12 28 28 H 1.08993 * 109.47241 * 150.02228 * 17 16 15 29 29 H 1.09000 * 109.46851 * 30.02229 * 17 16 15 30 30 H 0.96705 * 114.00279 * 179.97438 * 18 17 16 31 31 H 1.08004 * 122.55545 * 179.76490 * 19 16 15 32 32 H 1.08000 * 119.77204 * 179.72564 * 20 11 10 33 33 H 1.07999 * 119.85207 * 180.27622 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 2.3973 2.1000 -1.3959 5 1 1.4898 2.6240 0.7910 6 1 3.5837 1.4148 0.6050 7 6 2.0081 -1.2118 0.0005 8 1 1.5209 -2.1163 0.3337 9 6 3.3516 -1.2520 -0.4347 10 6 3.8043 -0.3547 -1.4182 11 6 5.1209 -0.4032 -1.8357 12 7 5.5756 0.4866 -2.8123 13 6 6.6798 0.1459 -3.6153 14 6 7.5729 1.0497 -4.0347 15 16 8.8020 0.2558 -5.0104 16 6 8.0167 -1.3022 -4.7900 17 6 8.5002 -2.6071 -5.3683 18 8 7.9146 -2.8031 -6.6570 19 6 6.9250 -1.1532 -4.0380 20 6 5.9954 -1.3417 -1.2885 21 6 5.5588 -2.2239 -0.3163 22 6 4.2479 -2.1921 0.1145 23 9 3.8245 -3.0597 1.0597 24 1 -0.4850 0.8402 -0.0004 25 1 3.1263 0.3697 -1.8449 26 1 5.1301 1.3392 -2.9367 27 1 7.5430 2.1054 -3.8091 28 1 8.2112 -3.4258 -4.7094 29 1 9.5859 -2.5825 -5.4626 30 1 8.1824 -3.6254 -7.0898 31 1 6.2823 -1.9808 -3.7761 32 1 7.0218 -1.3769 -1.6225 33 1 6.2455 -2.9437 0.1039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176376167.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:05 Heat of formation + Delta-G solvation = -58.499070 kcal Electronic energy + Delta-G solvation = -20249.271096 eV Core-core repulsion = 16893.893324 eV Total energy + Delta-G solvation = -3355.377772 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.063 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.20252 -40.67007 -38.89845 -37.66497 -35.81735 -34.79907 -32.44567 -31.52324 -28.94121 -27.43263 -26.77854 -23.95615 -23.30968 -22.04930 -20.33284 -19.46446 -18.48269 -18.35640 -18.13859 -17.92798 -17.01168 -16.58530 -16.27451 -15.99949 -15.62520 -15.18736 -14.89926 -14.64760 -14.44997 -13.98404 -13.87288 -13.76160 -13.50989 -13.37779 -13.19794 -12.74856 -12.60561 -12.49328 -11.98298 -11.83344 -11.63226 -11.31688 -10.96470 -10.92434 -9.73329 -9.66018 -9.35520 -8.99653 -8.10316 -6.60081 -0.06550 0.62031 0.65462 0.72468 0.98747 1.20889 1.35366 1.45764 1.76617 2.07602 2.50970 2.56973 3.30524 3.50355 3.95086 4.02788 4.13656 4.22631 4.28569 4.47836 4.49909 4.61868 4.67367 4.79485 4.87750 5.08319 5.12301 5.28506 5.34002 5.54173 5.63247 5.69847 5.97655 6.12481 6.44150 6.63179 6.67709 6.81452 6.90795 8.08896 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.004561 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.188663 B = 6138.197456 C = 6851.155416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.053 3.947 3 Si 0.966 3.034 4 H -0.247 1.247 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.482 4.482 8 H 0.053 0.947 9 C 0.079 3.921 10 C -0.273 4.273 11 C 0.222 3.778 12 N -0.680 5.680 13 C 0.150 3.850 14 C -0.278 4.278 15 S 0.157 5.843 16 C -0.180 4.180 17 C 0.147 3.853 18 O -0.588 6.588 19 C -0.142 4.142 20 C -0.241 4.241 21 C -0.074 4.074 22 C -0.071 4.071 23 F -0.170 7.170 24 H 0.298 0.702 25 H 0.110 0.890 26 H 0.411 0.589 27 H 0.180 0.820 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.403 0.597 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.492 1.652 -11.046 21.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.164 4.164 3 Si 0.788 3.212 4 H -0.172 1.172 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.510 4.510 8 H 0.071 0.929 9 C 0.075 3.925 10 C -0.296 4.296 11 C 0.123 3.877 12 N -0.306 5.306 13 C 0.043 3.957 14 C -0.418 4.418 15 S 0.420 5.580 16 C -0.298 4.298 17 C 0.068 3.932 18 O -0.398 6.398 19 C -0.176 4.176 20 C -0.263 4.263 21 C -0.093 4.093 22 C -0.092 4.092 23 F -0.149 7.149 24 H 0.108 0.892 25 H 0.128 0.872 26 H 0.248 0.752 27 H 0.197 0.803 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.254 0.746 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 19.271 2.675 -11.636 22.670 hybrid contribution -2.031 -0.433 1.165 2.381 sum 17.240 2.242 -10.471 20.295 Atomic orbital electron populations 1.69749 1.09337 1.31903 1.35213 1.26867 0.95315 1.04246 0.89946 0.85477 0.79548 0.76044 0.80141 1.17209 1.19886 1.17916 1.19309 0.95400 0.96343 1.39971 0.92850 1.17567 0.92346 0.91605 0.91025 1.20494 0.94769 1.08330 1.06050 1.17513 0.91227 0.90742 0.88210 1.41924 1.32392 1.20230 1.36099 1.16766 0.89948 0.93281 0.95664 1.25347 1.00018 1.04647 1.11749 1.83740 1.26558 0.96919 1.50791 1.24342 1.00664 1.00163 1.04644 1.20512 0.97064 0.90928 0.84694 1.86518 1.73616 1.47628 1.32033 1.20030 0.99031 0.97415 1.01084 1.20265 0.99280 1.02517 1.04208 1.20719 0.92805 0.99121 0.96693 1.18070 0.94331 0.99276 0.97537 1.91258 1.91232 1.68708 1.63730 0.89179 0.87228 0.75226 0.80280 0.90532 0.89953 0.74585 0.85100 0.84986 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.87 13.93 21.82 0.30 -45.57 16 2 C 0.05 2.83 5.36 85.24 0.46 3.29 16 3 Si 0.97 41.86 24.67 68.60 1.69 43.55 16 4 H -0.25 -9.73 6.66 99.48 0.66 -9.07 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.26 -11.41 7.06 99.48 0.70 -10.71 16 7 C -0.48 -27.87 9.22 23.43 0.22 -27.66 16 8 H 0.05 3.41 7.99 -2.91 -0.02 3.38 16 9 C 0.08 4.11 5.06 -21.27 -0.11 4.00 16 10 C -0.27 -12.64 7.21 22.84 0.16 -12.48 16 11 C 0.22 8.82 6.21 38.17 0.24 9.06 16 12 N -0.68 -22.36 5.54 -183.62 -1.02 -23.38 16 13 C 0.15 4.37 5.72 36.84 0.21 4.58 16 14 C -0.28 -6.61 11.19 66.81 0.75 -5.86 16 15 S 0.16 3.20 23.32 -56.49 -1.32 1.88 16 16 C -0.18 -4.21 6.13 24.59 0.15 -4.06 16 17 C 0.15 2.53 7.53 71.24 0.54 3.06 16 18 O -0.59 -10.89 13.64 -148.98 -2.03 -12.92 16 19 C -0.14 -4.06 7.88 21.31 0.17 -3.89 16 20 C -0.24 -9.06 8.22 22.59 0.19 -8.88 16 21 C -0.07 -2.99 10.00 22.24 0.22 -2.77 16 22 C -0.07 -3.51 7.31 22.90 0.17 -3.34 16 23 F -0.17 -8.70 16.78 44.97 0.75 -7.94 16 24 H 0.30 14.46 8.30 -92.70 -0.77 13.69 16 25 H 0.11 5.01 5.01 -2.91 -0.01 5.00 16 26 H 0.41 12.15 8.90 -92.71 -0.83 11.32 16 27 H 0.18 3.53 8.06 -2.91 -0.02 3.50 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.40 3.09 9.12 -74.05 -0.68 2.41 16 31 H 0.13 4.14 7.28 -2.91 -0.02 4.12 16 32 H 0.13 4.35 6.44 -2.91 -0.02 4.33 16 33 H 0.14 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -66.26 301.18 1.38 -64.88 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: -0.36 Total: 24.44 kcal Atomic # 6 Polarization: -48.31 SS G_CDS: 3.36 Total: -44.96 kcal Atomic # 7 Polarization: -68.23 SS G_CDS: -0.71 Total: -68.94 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -2.03 Total: -12.92 kcal Atomic # 9 Polarization: -8.70 SS G_CDS: 0.75 Total: -7.94 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.69 Total: 43.55 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.32 Total: 1.88 kcal Total: -66.26 1.38 -64.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176376167.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.385 kcal (2) G-P(sol) polarization free energy of solvation -66.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds