Wall clock time and date at job start Tue Mar 31 2020 06:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86803 * 119.99457 * 2 1 4 4 H 1.48500 * 109.47103 * 240.00030 * 3 2 1 5 5 H 1.48504 * 109.47379 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46886 * 120.00118 * 3 2 1 7 7 C 1.39933 * 120.00417 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99367 * 190.93641 * 7 2 1 9 9 C 1.41400 * 120.00016 * 10.93819 * 7 2 1 10 10 C 1.40782 * 120.20837 * 28.72213 * 9 7 2 11 11 C 1.37649 * 119.89668 * 180.02562 * 10 9 7 12 12 C 1.38521 * 120.32111 * 359.74265 * 11 10 9 13 13 C 1.39292 * 120.42281 * 0.51677 * 12 11 10 14 14 N 1.39694 * 119.94852 * 179.76490 * 13 12 11 15 15 S 1.65602 * 119.99941 * 284.21141 * 14 13 12 16 16 O 1.42100 * 106.40320 * 182.86065 * 15 14 13 17 17 O 1.42102 * 106.40300 * 49.93941 * 15 14 13 18 18 C 1.76203 * 107.21627 * 296.40065 * 15 14 13 19 19 C 1.41390 * 126.57754 * 85.52288 * 18 15 14 20 20 C 1.34512 * 106.83564 * 179.97438 * 19 18 15 21 21 O 1.34296 * 108.42604 * 0.02562 * 20 19 18 22 22 C 1.34309 * 109.47633 * 359.76106 * 21 20 19 23 23 C 1.38315 * 120.10077 * 359.48486 * 13 12 11 24 24 H 0.96998 * 120.00416 * 359.97438 * 1 2 3 25 25 H 1.08007 * 120.05569 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.83897 * 180.02562 * 11 10 9 27 27 H 1.08004 * 119.78722 * 180.27948 * 12 11 10 28 28 H 0.97001 * 120.00170 * 104.21577 * 14 13 12 29 29 H 1.08000 * 126.58160 * 359.97438 * 19 18 15 30 30 H 1.08007 * 125.78623 * 180.02562 * 20 19 18 31 31 H 1.07996 * 125.79261 * 180.24003 * 22 21 20 32 32 H 1.07989 * 120.16410 * 180.23634 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6966 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0081 -1.2118 -0.0005 8 1 3.0733 -1.2202 0.1769 9 6 1.3204 -2.4252 -0.2334 10 6 0.1564 -2.4390 -1.0251 11 6 -0.5083 -3.6237 -1.2473 12 6 -0.0345 -4.8047 -0.6998 13 6 1.1129 -4.8056 0.0900 14 7 1.5792 -6.0015 0.6412 15 16 0.8102 -6.6659 1.9486 16 8 1.5543 -7.8223 2.3069 17 8 -0.5731 -6.7011 1.6254 18 6 0.9799 -5.5310 3.2858 19 6 0.1434 -4.4256 3.5640 20 6 0.6322 -3.8356 4.6696 21 8 1.7146 -4.5207 5.0731 22 6 1.9273 -5.5528 4.2404 23 6 1.7945 -3.6251 0.3245 24 1 -0.4850 0.8400 0.0004 25 1 -0.2151 -1.5213 -1.4569 26 1 -1.4009 -3.6333 -1.8551 27 1 -0.5602 -5.7301 -0.8834 28 1 2.3535 -6.4427 0.2581 29 1 -0.7220 -4.1147 2.9977 30 1 0.2236 -2.9595 5.1512 31 1 2.7250 -6.2762 4.3221 32 1 2.6863 -3.6252 0.9335 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188615964.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:13 Heat of formation + Delta-G solvation = -38.325410 kcal Electronic energy + Delta-G solvation = -21064.043828 eV Core-core repulsion = 17697.168062 eV Total energy + Delta-G solvation = -3366.875766 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.51394 -38.01172 -36.82830 -35.52972 -34.71997 -33.08019 -32.94377 -29.94903 -29.58693 -27.77067 -25.33191 -22.53507 -21.62215 -21.12816 -20.86271 -19.16789 -18.35626 -17.66190 -17.22241 -15.97678 -15.77620 -15.55867 -15.31491 -14.73294 -14.56570 -14.24695 -13.67837 -13.08713 -12.76885 -12.62531 -12.47372 -12.13378 -11.81041 -11.67765 -11.63858 -11.29610 -11.16572 -11.06637 -10.90209 -10.50805 -10.30427 -10.06419 -9.85925 -9.28148 -9.10770 -8.69611 -7.59876 -7.39221 -6.79012 -4.47897 0.72478 1.53446 2.41648 2.67993 2.75104 3.02006 3.04375 3.06823 3.13306 3.48449 3.87964 4.04467 4.51939 4.55218 4.81272 5.26111 5.50530 5.52345 5.91458 6.01569 6.05869 6.26134 6.42209 6.46374 6.81120 6.91972 6.94598 7.08461 7.10871 7.19369 7.58623 7.75382 7.91994 7.94517 8.17489 8.51933 8.79701 8.82845 10.15465 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.005942 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.112828 B = 4711.213817 C = 5643.476386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.111 3.889 10 C -0.145 4.145 11 C -0.105 4.105 12 C -0.211 4.211 13 C 0.129 3.871 14 N -1.054 6.054 15 S 2.718 3.282 16 O -0.979 6.979 17 O -0.948 6.948 18 C -0.750 4.750 19 C -0.118 4.118 20 C -0.049 4.049 21 O -0.170 6.170 22 C 0.089 3.911 23 C -0.205 4.205 24 H 0.281 0.719 25 H 0.123 0.877 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.414 0.586 29 H 0.163 0.837 30 H 0.210 0.790 31 H 0.218 0.782 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.310 -5.046 5.458 7.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.108 3.892 10 C -0.165 4.165 11 C -0.124 4.124 12 C -0.233 4.233 13 C 0.036 3.964 14 N -0.809 5.809 15 S 2.807 3.193 16 O -0.969 6.969 17 O -0.938 6.938 18 C -0.838 4.838 19 C -0.137 4.137 20 C -0.116 4.116 21 O -0.064 6.064 22 C 0.016 3.984 23 C -0.228 4.228 24 H 0.092 0.908 25 H 0.141 0.859 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.251 0.749 29 H 0.180 0.820 30 H 0.226 0.774 31 H 0.234 0.766 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.698 -5.519 5.891 8.249 hybrid contribution 0.809 1.345 0.065 1.571 sum 2.507 -4.174 5.956 7.693 Atomic orbital electron populations 1.69762 1.07351 1.29229 1.36446 1.25851 0.94829 1.01127 0.92367 0.86343 0.80022 0.80294 0.79898 1.18874 1.20324 1.19143 1.19482 0.95891 0.90394 1.43663 0.90587 1.17469 0.91626 0.91592 0.88504 1.21535 0.98058 0.96754 1.00135 1.20654 0.98794 0.92900 1.00059 1.20699 0.99651 0.97812 1.05142 1.16957 0.96560 0.83326 0.99526 1.52792 1.46286 1.35668 1.46179 1.01224 0.73788 0.72009 0.72276 1.93538 1.73320 1.46130 1.83912 1.93577 1.31688 1.85843 1.82702 1.32068 1.08365 1.20810 1.22509 1.21441 1.01117 0.93778 0.97367 1.24188 0.88561 0.99756 0.99103 1.84045 1.40956 1.33826 1.47525 1.23984 0.97592 0.89097 0.87698 1.21189 1.02967 0.92368 1.06280 0.90818 0.85879 0.88598 0.88158 0.74911 0.81964 0.77374 0.76589 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.69 10.85 55.55 0.60 -19.09 16 2 C 0.07 1.79 5.25 -17.34 -0.09 1.70 16 3 Si 0.91 17.96 29.57 -169.99 -5.03 12.94 16 4 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 7 C -0.46 -11.62 9.06 -37.74 -0.34 -11.96 16 8 H 0.08 1.83 7.87 -52.49 -0.41 1.42 16 9 C 0.11 2.77 5.55 -106.85 -0.59 2.17 16 10 C -0.14 -3.54 8.66 -38.84 -0.34 -3.87 16 11 C -0.10 -2.34 10.02 -39.69 -0.40 -2.74 16 12 C -0.21 -4.58 9.32 -39.09 -0.36 -4.95 16 13 C 0.13 2.69 5.77 -83.86 -0.48 2.20 16 14 N -1.05 -18.04 5.69 32.37 0.18 -17.85 16 15 S 2.72 46.57 5.86 -107.50 -0.63 45.94 16 16 O -0.98 -16.97 17.83 -57.17 -1.02 -17.99 16 17 O -0.95 -19.17 17.04 -57.17 -0.97 -20.14 16 18 C -0.75 -12.29 6.13 -39.70 -0.24 -12.53 16 19 C -0.12 -1.98 10.79 -39.70 -0.43 -2.41 16 20 C -0.05 -0.71 12.09 29.42 0.36 -0.35 16 21 O -0.17 -2.43 10.65 5.71 0.06 -2.36 16 22 C 0.09 1.23 11.82 29.41 0.35 1.58 16 23 C -0.21 -4.64 9.71 -38.68 -0.38 -5.01 16 24 H 0.28 6.33 8.30 -40.82 -0.34 6.00 16 25 H 0.12 3.10 6.22 -52.48 -0.33 2.78 16 26 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 27 H 0.10 2.07 7.97 -52.48 -0.42 1.66 16 28 H 0.41 5.84 8.95 -34.47 -0.31 5.53 16 29 H 0.16 2.82 8.06 -52.49 -0.42 2.40 16 30 H 0.21 2.23 8.06 -52.48 -0.42 1.81 16 31 H 0.22 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 302.58 15.07 4.56 4.56 Total: -1.00 -30.42 302.58 -7.91 -38.33 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -2.71 Total: 11.84 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: -2.95 Total: -36.16 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.79 Total: -36.94 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -1.93 Total: -40.49 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.94 kcal Atomic # 16 Polarization: 46.57 SS G_CDS: -0.63 Total: 45.94 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.42 -7.91 -38.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188615964.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.007 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds