Wall clock time and date at job start Tue Mar 31 2020 06:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86803 * 119.99457 * 2 1 4 4 H 1.48500 * 109.47103 * 240.00030 * 3 2 1 5 5 H 1.48504 * 109.47379 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46886 * 120.00118 * 3 2 1 7 7 C 1.39933 * 120.00417 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99367 * 190.93641 * 7 2 1 9 9 C 1.41400 * 120.00016 * 10.93819 * 7 2 1 10 10 C 1.40782 * 120.20837 * 28.72213 * 9 7 2 11 11 C 1.37649 * 119.89668 * 180.02562 * 10 9 7 12 12 C 1.38521 * 120.32111 * 359.74265 * 11 10 9 13 13 C 1.39292 * 120.42281 * 0.51677 * 12 11 10 14 14 N 1.39694 * 119.94852 * 179.76490 * 13 12 11 15 15 S 1.65602 * 119.99941 * 284.21141 * 14 13 12 16 16 O 1.42100 * 106.40320 * 182.86065 * 15 14 13 17 17 O 1.42102 * 106.40300 * 49.93941 * 15 14 13 18 18 C 1.76203 * 107.21627 * 296.40065 * 15 14 13 19 19 C 1.41390 * 126.57754 * 85.52288 * 18 15 14 20 20 C 1.34512 * 106.83564 * 179.97438 * 19 18 15 21 21 O 1.34296 * 108.42604 * 0.02562 * 20 19 18 22 22 C 1.34309 * 109.47633 * 359.76106 * 21 20 19 23 23 C 1.38315 * 120.10077 * 359.48486 * 13 12 11 24 24 H 0.96998 * 120.00416 * 359.97438 * 1 2 3 25 25 H 1.08007 * 120.05569 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.83897 * 180.02562 * 11 10 9 27 27 H 1.08004 * 119.78722 * 180.27948 * 12 11 10 28 28 H 0.97001 * 120.00170 * 104.21577 * 14 13 12 29 29 H 1.08000 * 126.58160 * 359.97438 * 19 18 15 30 30 H 1.08007 * 125.78623 * 180.02562 * 20 19 18 31 31 H 1.07996 * 125.79261 * 180.24003 * 22 21 20 32 32 H 1.07989 * 120.16410 * 180.23634 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6966 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0081 -1.2118 -0.0005 8 1 3.0733 -1.2202 0.1769 9 6 1.3204 -2.4252 -0.2334 10 6 0.1564 -2.4390 -1.0251 11 6 -0.5083 -3.6237 -1.2473 12 6 -0.0345 -4.8047 -0.6998 13 6 1.1129 -4.8056 0.0900 14 7 1.5792 -6.0015 0.6412 15 16 0.8102 -6.6659 1.9486 16 8 1.5543 -7.8223 2.3069 17 8 -0.5731 -6.7011 1.6254 18 6 0.9799 -5.5310 3.2858 19 6 0.1434 -4.4256 3.5640 20 6 0.6322 -3.8356 4.6696 21 8 1.7146 -4.5207 5.0731 22 6 1.9273 -5.5528 4.2404 23 6 1.7945 -3.6251 0.3245 24 1 -0.4850 0.8400 0.0004 25 1 -0.2151 -1.5213 -1.4569 26 1 -1.4009 -3.6333 -1.8551 27 1 -0.5602 -5.7301 -0.8834 28 1 2.3535 -6.4427 0.2581 29 1 -0.7220 -4.1147 2.9977 30 1 0.2236 -2.9595 5.1512 31 1 2.7250 -6.2762 4.3221 32 1 2.6863 -3.6252 0.9335 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188615964.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:12 Heat of formation + Delta-G solvation = -58.766299 kcal Electronic energy + Delta-G solvation = -21064.930211 eV Core-core repulsion = 17697.168062 eV Total energy + Delta-G solvation = -3367.762150 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.66500 -39.73539 -38.28026 -36.99423 -36.39424 -34.66621 -34.26528 -31.75785 -30.74067 -29.48016 -27.15798 -23.76304 -22.88881 -22.74559 -22.64113 -20.53630 -19.72122 -19.24244 -18.64152 -17.50174 -17.13795 -16.92700 -16.84981 -16.41825 -16.08102 -15.47612 -15.34347 -14.75008 -14.16227 -13.99265 -13.82217 -13.73802 -13.33210 -13.26326 -13.16975 -12.95637 -12.86987 -12.58509 -12.44516 -12.14050 -11.83226 -11.60790 -11.51184 -11.04840 -10.71198 -9.85824 -9.39811 -9.17671 -8.56993 -6.35730 -0.65950 0.39278 0.94087 0.99122 1.18385 1.41641 1.51488 1.53657 1.94651 2.14558 2.23719 2.68609 2.75790 3.23287 3.67839 3.80701 3.97599 4.39962 4.41665 4.56241 4.67951 4.70432 4.94276 5.04108 5.09809 5.24155 5.28214 5.37774 5.59234 5.78705 5.88654 6.04167 6.11111 6.17220 6.39414 6.69255 6.95453 7.00542 8.39093 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.005942 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.112828 B = 4711.213817 C = 5643.476386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.037 3.963 3 Si 0.978 3.022 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.496 4.496 8 H 0.076 0.924 9 C 0.087 3.913 10 C -0.169 4.169 11 C -0.105 4.105 12 C -0.220 4.220 13 C 0.145 3.855 14 N -1.049 6.049 15 S 2.739 3.261 16 O -0.977 6.977 17 O -0.982 6.982 18 C -0.777 4.777 19 C -0.157 4.157 20 C -0.037 4.037 21 O -0.167 6.167 22 C 0.108 3.892 23 C -0.210 4.210 24 H 0.287 0.713 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.429 0.571 29 H 0.145 0.855 30 H 0.242 0.758 31 H 0.258 0.742 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.586 -5.139 6.573 9.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.526 4.526 8 H 0.094 0.906 9 C 0.084 3.916 10 C -0.189 4.189 11 C -0.124 4.124 12 C -0.242 4.242 13 C 0.051 3.949 14 N -0.806 5.806 15 S 2.830 3.170 16 O -0.967 6.967 17 O -0.972 6.972 18 C -0.866 4.866 19 C -0.177 4.177 20 C -0.103 4.103 21 O -0.060 6.060 22 C 0.035 3.965 23 C -0.233 4.233 24 H 0.097 0.903 25 H 0.126 0.874 26 H 0.134 0.866 27 H 0.130 0.870 28 H 0.269 0.731 29 H 0.163 0.837 30 H 0.258 0.742 31 H 0.274 0.726 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.980 -5.649 6.982 9.463 hybrid contribution 0.399 1.260 -0.221 1.341 sum 3.380 -4.389 6.760 8.740 Atomic orbital electron populations 1.69830 1.08670 1.30376 1.36776 1.26634 0.95537 1.04103 0.91459 0.85304 0.78726 0.76087 0.79913 1.18597 1.19483 1.18615 1.19739 0.96131 0.91436 1.45288 0.90559 1.17784 0.92172 0.92619 0.89040 1.21472 0.99008 0.96932 1.01507 1.20884 0.99174 0.92484 0.99880 1.20943 1.00088 0.98018 1.05194 1.16869 0.95695 0.84053 0.98275 1.52664 1.46833 1.34409 1.46646 1.00364 0.72757 0.71820 0.72077 1.93534 1.73113 1.46243 1.83857 1.93535 1.33780 1.86498 1.83417 1.31887 1.10043 1.21269 1.23386 1.21492 1.01812 0.95351 0.99061 1.24732 0.87749 0.99805 0.98017 1.84089 1.40693 1.33833 1.47369 1.24751 0.97061 0.88677 0.85976 1.21273 1.03386 0.92312 1.06329 0.90257 0.87405 0.86591 0.87043 0.73113 0.83732 0.74231 0.72623 0.87751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.43 10.85 21.82 0.24 -41.19 16 2 C 0.04 1.77 5.25 85.25 0.45 2.21 16 3 Si 0.98 36.56 29.57 68.60 2.03 38.59 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 5 H -0.27 -9.65 7.11 99.48 0.71 -8.95 16 6 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 7 C -0.50 -25.19 9.06 23.46 0.21 -24.98 16 8 H 0.08 3.72 7.87 -2.91 -0.02 3.70 16 9 C 0.09 4.40 5.55 -21.31 -0.12 4.28 16 10 C -0.17 -8.48 8.66 22.75 0.20 -8.28 16 11 C -0.11 -4.74 10.02 22.20 0.22 -4.52 16 12 C -0.22 -9.52 9.32 22.59 0.21 -9.31 16 13 C 0.14 5.95 5.77 38.16 0.22 6.17 16 14 N -1.05 -34.54 5.69 -51.49 -0.29 -34.84 16 15 S 2.74 90.54 5.86 -56.49 -0.33 90.21 16 16 O -0.98 -31.75 17.83 -128.00 -2.28 -34.03 16 17 O -0.98 -39.47 17.04 -128.00 -2.18 -41.65 16 18 C -0.78 -24.36 6.13 22.19 0.14 -24.22 16 19 C -0.16 -5.24 10.79 22.19 0.24 -5.00 16 20 C -0.04 -0.98 12.09 66.97 0.81 -0.17 16 21 O -0.17 -4.30 10.65 -2.48 -0.03 -4.32 16 22 C 0.11 2.68 11.82 66.97 0.79 3.47 16 23 C -0.21 -9.50 9.71 22.86 0.22 -9.28 16 24 H 0.29 13.06 8.30 -92.71 -0.77 12.29 16 25 H 0.11 5.65 6.22 -2.91 -0.02 5.63 16 26 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 27 H 0.11 4.53 7.97 -2.91 -0.02 4.51 16 28 H 0.43 11.33 8.95 -96.74 -0.87 10.47 16 29 H 0.14 5.23 8.06 -2.91 -0.02 5.21 16 30 H 0.24 4.57 8.06 -2.91 -0.02 4.55 16 31 H 0.26 3.94 8.06 -2.91 -0.02 3.91 16 32 H 0.10 4.44 8.06 -2.92 -0.02 4.42 16 Total: -1.00 -65.25 302.58 1.05 -64.21 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.30 Total: 32.64 kcal Atomic # 6 Polarization: -73.21 SS G_CDS: 3.59 Total: -69.62 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -0.06 Total: -76.03 kcal Atomic # 8 Polarization: -75.51 SS G_CDS: -4.49 Total: -80.00 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 2.03 Total: 38.59 kcal Atomic # 16 Polarization: 90.54 SS G_CDS: -0.33 Total: 90.21 kcal Total: -65.25 1.05 -64.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188615964.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.439 kcal (2) G-P(sol) polarization free energy of solvation -65.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds