Wall clock time and date at job start Tue Mar 31 2020 06:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00478 * 2 1 4 4 H 1.48498 * 109.47504 * 239.99916 * 3 2 1 5 5 H 1.48498 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46942 * 120.00198 * 3 2 1 7 7 C 1.37882 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00462 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99709 * 0.02562 * 7 2 1 10 10 O 1.42104 * 106.40351 * 71.36293 * 9 7 2 11 11 O 1.42094 * 106.40406 * 298.44026 * 9 7 2 12 12 N 1.65605 * 107.21671 * 184.89843 * 9 7 2 13 13 C 1.39809 * 120.00089 * 298.45800 * 12 9 7 14 14 C 1.38904 * 120.01061 * 133.80562 * 13 12 9 15 15 C 1.38045 * 119.99460 * 180.02562 * 14 13 12 16 16 C 1.38823 * 120.00873 * 0.02562 * 15 14 13 17 17 N 1.40381 * 119.99277 * 179.97438 * 16 15 14 18 18 C 1.37060 * 126.47203 * 179.71425 * 17 16 15 19 19 C 1.34673 * 106.84355 * 180.25848 * 18 17 16 20 20 N 1.34109 * 108.18342 * 0.02562 * 19 18 17 21 21 C 1.30540 * 109.34184 * 359.97438 * 20 19 18 22 22 C 1.38820 * 120.01874 * 0.25380 * 16 15 14 23 23 C 1.38047 * 120.01009 * 359.48430 * 22 16 15 24 24 H 0.97006 * 119.99463 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99785 * 118.45883 * 12 9 7 26 26 H 1.08004 * 120.00308 * 0.02562 * 14 13 12 27 27 H 1.08003 * 120.00000 * 180.02562 * 15 14 13 28 28 H 1.08010 * 126.57873 * 0.26422 * 18 17 16 29 29 H 1.08004 * 125.91283 * 179.97438 * 19 18 17 30 30 H 1.07998 * 125.71689 * 180.02562 * 21 20 19 31 31 H 1.07995 * 119.99620 * 179.74817 * 22 16 15 32 32 H 1.07998 * 120.00682 * 180.23502 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 16 1.1233 -2.7200 -0.0019 10 8 0.5459 -2.8488 -1.2939 11 8 0.3600 -2.7437 1.1964 12 7 2.2430 -3.9327 0.1328 13 6 3.2177 -4.0972 -0.8559 14 6 4.5456 -4.2903 -0.4971 15 6 5.5079 -4.4522 -1.4736 16 6 5.1486 -4.4215 -2.8142 17 7 6.1274 -4.5856 -3.8070 18 6 5.9218 -4.5837 -5.1621 19 6 7.1230 -4.7776 -5.7393 20 7 8.0400 -4.8958 -4.7678 21 6 7.4559 -4.7823 -3.6059 22 6 3.8225 -4.2227 -3.1734 23 6 2.8588 -4.0662 -2.1975 24 1 -0.4849 0.8401 0.0004 25 1 2.2226 -4.5289 0.8977 26 1 4.8253 -4.3138 0.5458 27 1 6.5403 -4.6028 -1.1947 28 1 4.9775 -4.4519 -5.6696 29 1 7.3147 -4.8299 -6.8009 30 1 7.9470 -4.8357 -2.6455 31 1 3.5440 -4.1948 -4.2165 32 1 1.8266 -3.9153 -2.4770 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192929295.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:05 Heat of formation + Delta-G solvation = 4.500673 kcal Electronic energy + Delta-G solvation = -20547.398132 eV Core-core repulsion = 17214.672195 eV Total energy + Delta-G solvation = -3332.725937 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.29990 -39.27933 -35.64001 -35.22206 -34.23857 -33.25662 -32.60262 -31.23165 -29.47914 -27.78900 -26.28151 -23.35950 -23.11228 -20.82461 -20.68119 -19.24411 -18.59054 -17.84016 -17.16470 -16.42805 -15.47227 -15.22171 -15.15847 -14.81496 -14.26127 -13.98948 -13.95685 -13.71708 -13.54157 -13.29024 -12.85209 -12.63606 -12.15522 -11.47708 -11.37047 -11.29254 -11.15958 -10.71663 -10.57597 -10.51565 -10.29233 -10.11875 -9.77782 -9.35967 -9.01472 -9.00105 -8.68948 -7.79298 -6.84086 -5.48085 0.89621 1.36541 1.97510 2.33060 2.67083 3.01283 3.05893 3.06097 3.11480 3.79792 3.93797 4.35316 4.52543 4.54187 4.65505 4.76226 4.89187 5.17556 5.31776 5.33031 5.51867 5.56753 5.61458 5.90657 5.94018 6.09676 6.28918 6.35662 6.43908 6.63730 6.76106 6.86567 7.18317 7.24055 7.58866 7.81384 7.92706 8.74692 10.10105 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020526 B = 0.004613 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.811261 B = 6068.430386 C = 6699.618824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.135 3.865 3 Si 0.922 3.078 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.015 5.015 8 H 0.104 0.896 9 S 2.703 3.297 10 O -0.998 6.998 11 O -0.991 6.991 12 N -1.075 6.075 13 C 0.180 3.820 14 C -0.119 4.119 15 C -0.113 4.113 16 C 0.095 3.905 17 N -0.400 5.400 18 C -0.052 4.052 19 C -0.031 4.031 20 N -0.492 5.492 21 C 0.182 3.818 22 C -0.103 4.103 23 C -0.122 4.122 24 H 0.293 0.707 25 H 0.414 0.586 26 H 0.137 0.863 27 H 0.131 0.869 28 H 0.177 0.823 29 H 0.172 0.828 30 H 0.206 0.794 31 H 0.133 0.867 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.920 -7.754 -4.451 13.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.084 4.084 3 Si 0.746 3.254 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.187 1.187 7 C -1.149 5.149 8 H 0.122 0.878 9 S 2.805 3.195 10 O -0.988 6.988 11 O -0.982 6.982 12 N -0.819 5.819 13 C 0.082 3.918 14 C -0.141 4.141 15 C -0.134 4.134 16 C 0.003 3.997 17 N -0.077 5.077 18 C -0.183 4.183 19 C -0.177 4.177 20 N -0.209 5.209 21 C -0.099 4.099 22 C -0.124 4.124 23 C -0.144 4.144 24 H 0.104 0.896 25 H 0.248 0.752 26 H 0.155 0.845 27 H 0.149 0.851 28 H 0.194 0.806 29 H 0.189 0.811 30 H 0.223 0.777 31 H 0.151 0.849 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.495 -7.820 -4.678 13.160 hybrid contribution 0.123 1.163 0.557 1.295 sum 9.618 -6.657 -4.120 12.401 Atomic orbital electron populations 1.69876 1.06754 1.31110 1.39456 1.24729 0.94504 1.00835 0.88349 0.86165 0.79902 0.79426 0.79953 1.18749 1.19948 1.18741 1.30342 1.06047 1.11021 1.67490 0.87819 1.00979 0.72028 0.73316 0.73223 1.93319 1.75911 1.87096 1.42471 1.93401 1.68712 1.87234 1.48821 1.54156 1.47227 1.49578 1.30899 1.17513 0.88455 0.97478 0.88349 1.21029 0.91050 1.02235 0.99834 1.20553 1.00009 1.02848 0.89961 1.17801 0.88184 1.06204 0.87543 1.43202 1.07803 1.50950 1.05764 1.22808 1.01901 1.11233 0.82369 1.22298 0.88651 1.07542 0.99257 1.70299 1.32823 1.19707 0.98117 1.25179 0.79929 1.05210 0.99555 1.20707 0.90082 1.01240 1.00347 1.21923 1.02473 0.99066 0.90915 0.89609 0.75182 0.84503 0.85120 0.80550 0.81098 0.77710 0.84911 0.81334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.70 13.10 55.43 0.73 -22.98 16 2 C 0.13 3.60 5.46 -17.82 -0.10 3.50 16 3 Si 0.92 19.94 29.54 -169.99 -5.02 14.92 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 7 C -1.02 -26.53 9.61 30.60 0.29 -26.24 16 8 H 0.10 2.51 7.81 -52.49 -0.41 2.10 16 9 S 2.70 66.57 4.94 -107.50 -0.53 66.03 16 10 O -1.00 -26.32 15.15 -57.17 -0.87 -27.18 16 11 O -0.99 -27.33 17.91 -57.17 -1.02 -28.35 16 12 N -1.07 -19.56 5.77 32.44 0.19 -19.37 16 13 C 0.18 3.02 6.14 -83.72 -0.51 2.50 16 14 C -0.12 -1.61 9.96 -39.41 -0.39 -2.00 16 15 C -0.11 -1.38 9.46 -39.44 -0.37 -1.76 16 16 C 0.10 1.28 6.64 -83.51 -0.55 0.72 16 17 N -0.40 -5.09 2.99 -62.07 -0.19 -5.27 16 18 C -0.05 -0.60 10.85 -16.48 -0.18 -0.78 16 19 C -0.03 -0.37 11.86 -17.82 -0.21 -0.58 16 20 N -0.49 -6.75 11.25 -14.48 -0.16 -6.92 16 21 C 0.18 2.22 11.91 -89.65 -1.07 1.15 16 22 C -0.10 -1.48 9.47 -39.44 -0.37 -1.85 16 23 C -0.12 -2.07 9.22 -39.40 -0.36 -2.44 16 24 H 0.29 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.41 6.16 8.96 -34.47 -0.31 5.85 16 26 H 0.14 1.52 8.06 -52.48 -0.42 1.09 16 27 H 0.13 1.17 6.77 -52.48 -0.36 0.82 16 28 H 0.18 1.60 7.15 -52.48 -0.38 1.23 16 29 H 0.17 1.57 8.06 -52.48 -0.42 1.15 16 30 H 0.21 1.77 7.06 -52.49 -0.37 1.40 16 31 H 0.13 1.58 6.81 -52.49 -0.36 1.23 16 32 H 0.17 3.18 5.70 -52.49 -0.30 2.88 16 LS Contribution 297.23 15.07 4.48 4.48 Total: -1.00 -34.40 297.23 -8.69 -43.09 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -2.46 Total: 9.32 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: -3.83 Total: -27.77 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.56 Total: -54.54 kcal Atomic # 8 Polarization: -53.64 SS G_CDS: -1.89 Total: -55.53 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 66.57 SS G_CDS: -0.53 Total: 66.03 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.40 -8.69 -43.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192929295.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.588 kcal (2) G-P(sol) polarization free energy of solvation -34.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds