Wall clock time and date at job start Tue Mar 31 2020 06:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00478 * 2 1 4 4 H 1.48498 * 109.47504 * 239.99916 * 3 2 1 5 5 H 1.48498 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46942 * 120.00198 * 3 2 1 7 7 C 1.37882 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00462 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99709 * 0.02562 * 7 2 1 10 10 O 1.42104 * 106.40351 * 71.36293 * 9 7 2 11 11 O 1.42094 * 106.40406 * 298.44026 * 9 7 2 12 12 N 1.65605 * 107.21671 * 184.89843 * 9 7 2 13 13 C 1.39809 * 120.00089 * 298.45800 * 12 9 7 14 14 C 1.38904 * 120.01061 * 133.80562 * 13 12 9 15 15 C 1.38045 * 119.99460 * 180.02562 * 14 13 12 16 16 C 1.38823 * 120.00873 * 0.02562 * 15 14 13 17 17 N 1.40381 * 119.99277 * 179.97438 * 16 15 14 18 18 C 1.37060 * 126.47203 * 179.71425 * 17 16 15 19 19 C 1.34673 * 106.84355 * 180.25848 * 18 17 16 20 20 N 1.34109 * 108.18342 * 0.02562 * 19 18 17 21 21 C 1.30540 * 109.34184 * 359.97438 * 20 19 18 22 22 C 1.38820 * 120.01874 * 0.25380 * 16 15 14 23 23 C 1.38047 * 120.01009 * 359.48430 * 22 16 15 24 24 H 0.97006 * 119.99463 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99785 * 118.45883 * 12 9 7 26 26 H 1.08004 * 120.00308 * 0.02562 * 14 13 12 27 27 H 1.08003 * 120.00000 * 180.02562 * 15 14 13 28 28 H 1.08010 * 126.57873 * 0.26422 * 18 17 16 29 29 H 1.08004 * 125.91283 * 179.97438 * 19 18 17 30 30 H 1.07998 * 125.71689 * 180.02562 * 21 20 19 31 31 H 1.07995 * 119.99620 * 179.74817 * 22 16 15 32 32 H 1.07998 * 120.00682 * 180.23502 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 16 1.1233 -2.7200 -0.0019 10 8 0.5459 -2.8488 -1.2939 11 8 0.3600 -2.7437 1.1964 12 7 2.2430 -3.9327 0.1328 13 6 3.2177 -4.0972 -0.8559 14 6 4.5456 -4.2903 -0.4971 15 6 5.5079 -4.4522 -1.4736 16 6 5.1486 -4.4215 -2.8142 17 7 6.1274 -4.5856 -3.8070 18 6 5.9218 -4.5837 -5.1621 19 6 7.1230 -4.7776 -5.7393 20 7 8.0400 -4.8958 -4.7678 21 6 7.4559 -4.7823 -3.6059 22 6 3.8225 -4.2227 -3.1734 23 6 2.8588 -4.0662 -2.1975 24 1 -0.4849 0.8401 0.0004 25 1 2.2226 -4.5289 0.8977 26 1 4.8253 -4.3138 0.5458 27 1 6.5403 -4.6028 -1.1947 28 1 4.9775 -4.4519 -5.6696 29 1 7.3147 -4.8299 -6.8009 30 1 7.9470 -4.8357 -2.6455 31 1 3.5440 -4.1948 -4.2165 32 1 1.8266 -3.9153 -2.4770 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192929295.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:04 Heat of formation + Delta-G solvation = -19.575997 kcal Electronic energy + Delta-G solvation = -20548.442175 eV Core-core repulsion = 17214.672195 eV Total energy + Delta-G solvation = -3333.769980 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.22768 -40.41544 -37.54618 -36.56615 -36.26135 -35.22563 -33.76395 -32.30659 -30.40591 -28.93670 -28.30182 -24.43308 -24.18403 -21.85348 -21.67638 -21.08833 -19.63867 -19.46439 -18.57546 -18.29017 -17.04225 -16.43627 -16.33729 -16.02826 -15.81298 -15.69888 -15.06466 -14.70869 -14.62103 -14.46547 -14.03609 -13.98825 -13.71896 -13.38894 -13.03640 -12.74276 -12.64906 -12.61022 -12.35902 -12.31528 -11.68942 -11.27206 -11.17766 -11.10085 -10.81813 -10.09607 -9.61233 -8.99580 -8.76895 -7.53226 -0.24271 0.22995 0.27566 1.31723 1.33635 1.34094 1.47105 1.71879 2.14846 2.16788 2.54070 2.68147 2.78226 3.52359 3.68663 3.74400 3.82733 3.95395 4.09005 4.23386 4.31018 4.50683 4.58372 4.70596 4.77227 4.95178 5.01534 5.14527 5.24738 5.40255 5.50972 5.65758 5.79165 5.84975 6.22510 6.33478 6.74144 7.02082 8.16209 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020526 B = 0.004613 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.811261 B = 6068.430386 C = 6699.618824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.985 3.015 4 H -0.254 1.254 5 H -0.263 1.263 6 H -0.249 1.249 7 C -1.034 5.034 8 H 0.119 0.881 9 S 2.714 3.286 10 O -1.028 7.028 11 O -1.031 7.031 12 N -1.060 6.060 13 C 0.147 3.853 14 C -0.108 4.108 15 C -0.103 4.103 16 C 0.102 3.898 17 N -0.408 5.408 18 C -0.062 4.062 19 C -0.041 4.041 20 N -0.522 5.522 21 C 0.182 3.818 22 C -0.108 4.108 23 C -0.147 4.147 24 H 0.300 0.700 25 H 0.428 0.572 26 H 0.166 0.834 27 H 0.172 0.828 28 H 0.196 0.804 29 H 0.192 0.808 30 H 0.239 0.761 31 H 0.149 0.851 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.969 -7.572 -4.467 15.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.138 4.138 3 Si 0.804 3.196 4 H -0.178 1.178 5 H -0.187 1.187 6 H -0.172 1.172 7 C -1.168 5.168 8 H 0.137 0.863 9 S 2.816 3.184 10 O -1.017 7.017 11 O -1.021 7.021 12 N -0.810 5.810 13 C 0.050 3.950 14 C -0.130 4.130 15 C -0.123 4.123 16 C 0.009 3.991 17 N -0.086 5.086 18 C -0.192 4.192 19 C -0.186 4.186 20 N -0.240 5.240 21 C -0.098 4.098 22 C -0.128 4.128 23 C -0.169 4.169 24 H 0.110 0.890 25 H 0.266 0.734 26 H 0.183 0.817 27 H 0.190 0.810 28 H 0.213 0.787 29 H 0.209 0.791 30 H 0.255 0.745 31 H 0.166 0.834 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 12.546 -7.664 -4.708 15.437 hybrid contribution -0.701 0.967 0.457 1.278 sum 11.845 -6.697 -4.251 14.256 Atomic orbital electron populations 1.69966 1.08601 1.32510 1.40980 1.25912 0.95331 1.05059 0.87524 0.85223 0.78890 0.74828 0.80705 1.17800 1.18689 1.17218 1.30722 1.07010 1.11980 1.67064 0.86328 1.00302 0.72343 0.73783 0.71976 1.93288 1.77280 1.87684 1.43459 1.93338 1.70625 1.88093 1.50068 1.53339 1.47034 1.48529 1.32113 1.17772 0.89424 1.00182 0.87648 1.21304 0.89445 1.00541 1.01718 1.20992 1.01647 1.00732 0.88929 1.17915 0.87860 1.04877 0.88431 1.43295 1.07917 1.51539 1.05897 1.23242 1.02809 1.10910 0.82280 1.22735 0.88555 1.07100 1.00212 1.70317 1.33740 1.20842 0.99097 1.25889 0.79625 1.03806 1.00505 1.20803 0.90321 1.01008 1.00644 1.21771 1.01853 1.01178 0.92075 0.88961 0.73429 0.81678 0.81026 0.78677 0.79107 0.74514 0.83369 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.15 13.10 21.45 0.28 -50.87 16 2 C 0.08 4.04 5.46 84.66 0.46 4.51 16 3 Si 0.99 39.94 29.54 68.60 2.03 41.97 16 4 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 7 C -1.03 -54.33 9.61 67.74 0.65 -53.68 16 8 H 0.12 5.64 7.81 -2.91 -0.02 5.62 16 9 S 2.71 137.49 4.94 -56.49 -0.28 137.21 16 10 O -1.03 -56.68 15.15 -128.00 -1.94 -58.61 16 11 O -1.03 -58.77 17.91 -128.00 -2.29 -61.06 16 12 N -1.06 -38.76 5.77 -51.29 -0.30 -39.05 16 13 C 0.15 4.79 6.14 38.19 0.23 5.03 16 14 C -0.11 -2.59 9.96 22.38 0.22 -2.37 16 15 C -0.10 -2.10 9.46 22.36 0.21 -1.89 16 16 C 0.10 2.45 6.64 38.05 0.25 2.70 16 17 N -0.41 -9.17 2.99 -350.28 -1.05 -10.22 16 18 C -0.06 -1.31 10.85 83.06 0.90 -0.41 16 19 C -0.04 -0.88 11.86 83.53 0.99 0.11 16 20 N -0.52 -13.01 11.25 -199.72 -2.25 -15.26 16 21 C 0.18 3.81 11.91 180.01 2.14 5.95 16 22 C -0.11 -2.96 9.47 22.36 0.21 -2.75 16 23 C -0.15 -5.03 9.22 22.39 0.21 -4.83 16 24 H 0.30 15.55 8.31 -92.70 -0.77 14.78 16 25 H 0.43 12.68 8.96 -96.74 -0.87 11.81 16 26 H 0.17 2.98 8.06 -2.91 -0.02 2.95 16 27 H 0.17 2.07 6.77 -2.91 -0.02 2.05 16 28 H 0.20 3.14 7.15 -2.91 -0.02 3.12 16 29 H 0.19 3.10 8.06 -2.91 -0.02 3.07 16 30 H 0.24 2.96 7.06 -2.91 -0.02 2.94 16 31 H 0.15 3.41 6.81 -2.91 -0.02 3.39 16 32 H 0.14 5.57 5.70 -2.91 -0.02 5.56 16 Total: -1.00 -76.40 297.23 1.01 -75.39 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.32 Total: 28.13 kcal Atomic # 6 Polarization: -54.11 SS G_CDS: 6.49 Total: -47.62 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -3.31 Total: -115.40 kcal Atomic # 8 Polarization: -115.44 SS G_CDS: -4.23 Total: -119.68 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Atomic # 16 Polarization: 137.49 SS G_CDS: -0.28 Total: 137.21 kcal Total: -76.40 1.01 -75.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192929295.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.810 kcal (2) G-P(sol) polarization free energy of solvation -76.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds