Wall clock time and date at job start Tue Mar 31 2020 06:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00011 * 2 1 4 4 H 1.48498 * 109.46821 * 239.99838 * 3 2 1 5 5 H 1.48495 * 109.47294 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47011 * 119.99929 * 3 2 1 7 7 C 1.37875 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99903 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00181 * 0.02562 * 7 2 1 10 10 O 1.42093 * 106.40054 * 66.46169 * 9 7 2 11 11 O 1.42101 * 106.39906 * 293.53686 * 9 7 2 12 12 N 1.65603 * 107.21756 * 180.02562 * 9 7 2 13 13 C 1.39807 * 120.00220 * 67.73977 * 12 9 7 14 14 C 1.38764 * 120.10262 * 325.96142 * 13 12 9 15 15 C 1.38177 * 119.99279 * 180.02562 * 14 13 12 16 16 C 1.38299 * 120.18793 * 359.97438 * 15 14 13 17 17 C 1.38216 * 120.20505 * 0.02562 * 16 15 14 18 18 C 1.38653 * 120.00289 * 359.97438 * 17 16 15 19 19 N 1.40387 * 120.09185 * 180.02562 * 18 17 16 20 20 C 1.37058 * 126.46845 * 309.97940 * 19 18 17 21 21 C 1.34670 * 106.84007 * 180.02562 * 20 19 18 22 22 N 1.34111 * 108.18503 * 0.02562 * 21 20 19 23 23 C 1.30547 * 109.33630 * 359.72488 * 22 21 20 24 24 H 0.97006 * 119.99544 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99815 * 247.74451 * 12 9 7 26 26 H 1.08002 * 120.00307 * 359.97438 * 14 13 12 27 27 H 1.08001 * 119.90579 * 179.72116 * 15 14 13 28 28 H 1.08001 * 119.90406 * 180.02562 * 16 15 14 29 29 H 1.07994 * 120.00287 * 179.97438 * 17 16 15 30 30 H 1.08001 * 126.57742 * 0.02562 * 20 19 18 31 31 H 1.08002 * 125.91144 * 179.97438 * 21 20 19 32 32 H 1.08001 * 125.71595 * 180.26895 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1234 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2494 11 8 0.4509 -2.7949 1.2501 12 7 2.2482 -3.9355 0.0019 13 6 3.0587 -4.1366 1.1232 14 6 3.4717 -3.0539 1.8866 15 6 4.2732 -3.2552 2.9940 16 6 4.6657 -4.5340 3.3452 17 6 4.2589 -5.6181 2.5905 18 6 3.4546 -5.4256 1.4776 19 7 3.0400 -6.5254 0.7100 20 6 3.8409 -7.5206 0.2134 21 6 3.0389 -8.3675 -0.4596 22 7 1.7821 -7.9064 -0.3797 23 6 1.7691 -6.8064 0.3231 24 1 -0.4850 0.8401 -0.0004 25 1 2.3446 -4.5079 -0.7752 26 1 3.1674 -2.0539 1.6148 27 1 4.5976 -2.4111 3.5846 28 1 5.2918 -4.6861 4.2119 29 1 4.5676 -6.6153 2.8675 30 1 4.9101 -7.6086 0.3380 31 1 3.3534 -9.2628 -0.9754 32 1 0.8945 -6.2171 0.5557 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192929478.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:07 Heat of formation + Delta-G solvation = 6.982286 kcal Electronic energy + Delta-G solvation = -21290.053128 eV Core-core repulsion = 17957.434802 eV Total energy + Delta-G solvation = -3332.618326 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.14669 -39.22537 -35.52912 -34.75628 -34.25005 -33.79921 -33.30356 -29.81248 -29.36141 -28.38584 -26.45111 -23.30298 -22.65172 -20.90963 -20.85816 -19.14701 -18.46357 -17.86092 -17.12263 -16.45488 -15.62147 -14.98232 -14.90798 -14.59259 -14.25464 -14.22628 -13.82426 -13.80327 -13.40531 -13.21452 -12.91549 -12.20147 -11.98675 -11.76391 -11.34190 -11.14520 -10.94345 -10.75731 -10.58790 -10.48850 -10.46528 -10.12876 -9.89374 -9.40237 -9.05200 -8.70945 -8.44321 -7.96070 -6.89677 -5.55702 1.09683 1.43305 1.92622 2.22888 2.84319 2.97237 3.03185 3.07310 3.23984 3.76126 3.88029 4.28145 4.45181 4.81697 4.82789 4.92614 5.05879 5.26969 5.37566 5.45939 5.51636 5.61285 5.70078 5.86516 6.10740 6.15935 6.30484 6.38758 6.54936 6.63850 6.80045 6.89925 7.11757 7.34548 7.52223 7.70491 8.12606 8.66624 10.04731 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020707 B = 0.006188 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.842558 B = 4523.845684 C = 5456.634246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.134 3.866 3 Si 0.924 3.076 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.261 1.261 7 C -1.024 5.024 8 H 0.110 0.890 9 S 2.697 3.303 10 O -0.990 6.990 11 O -0.985 6.985 12 N -1.071 6.071 13 C 0.208 3.792 14 C -0.155 4.155 15 C -0.077 4.077 16 C -0.140 4.140 17 C -0.091 4.091 18 C 0.064 3.936 19 N -0.403 5.403 20 C -0.054 4.054 21 C -0.032 4.032 22 N -0.491 5.491 23 C 0.194 3.806 24 H 0.295 0.705 25 H 0.413 0.587 26 H 0.171 0.829 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.174 0.826 31 H 0.171 0.829 32 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.237 -7.393 4.959 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.085 4.085 3 Si 0.747 3.253 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.186 1.186 7 C -1.157 5.157 8 H 0.128 0.872 9 S 2.798 3.202 10 O -0.981 6.981 11 O -0.975 6.975 12 N -0.811 5.811 13 C 0.107 3.893 14 C -0.176 4.176 15 C -0.096 4.096 16 C -0.160 4.160 17 C -0.111 4.111 18 C -0.031 4.031 19 N -0.082 5.082 20 C -0.186 4.186 21 C -0.179 4.179 22 N -0.208 5.208 23 C -0.088 4.088 24 H 0.106 0.894 25 H 0.247 0.753 26 H 0.188 0.812 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.191 0.809 31 H 0.188 0.812 32 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 9.345 -7.639 4.708 12.956 hybrid contribution 1.688 1.248 -0.094 2.102 sum 11.033 -6.391 4.614 13.560 Atomic orbital electron populations 1.69876 1.06858 1.31317 1.38600 1.24763 0.94530 1.00908 0.88338 0.86136 0.79876 0.79303 0.79990 1.18720 1.19940 1.18552 1.30467 1.06069 1.11151 1.67992 0.87181 1.01266 0.72152 0.73490 0.73310 1.93417 1.72222 1.87125 1.45312 1.93421 1.71823 1.87024 1.45274 1.54537 1.53167 1.52434 1.20991 1.17324 0.92256 0.91401 0.88338 1.21986 0.98744 1.00253 0.96655 1.21119 0.95711 0.97296 0.95457 1.20933 1.02363 0.92102 1.00567 1.20799 0.97731 0.99809 0.92721 1.17569 1.06057 0.84260 0.95264 1.43013 1.08209 1.18164 1.38780 1.22804 0.98137 0.92359 1.05277 1.22297 0.89100 1.01798 1.04708 1.70357 1.22512 1.09717 1.18208 1.25390 0.87606 0.96492 0.99279 0.89437 0.75281 0.81152 0.84869 0.85290 0.85421 0.80888 0.81221 0.77988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.26 13.19 55.43 0.73 -22.52 16 2 C 0.13 3.48 5.46 -17.82 -0.10 3.38 16 3 Si 0.92 19.07 29.54 -169.99 -5.02 14.05 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 5 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -1.02 -25.84 7.61 30.60 0.23 -25.61 16 8 H 0.11 2.47 6.83 -52.48 -0.36 2.12 16 9 S 2.70 67.96 4.65 -107.50 -0.50 67.46 16 10 O -0.99 -28.04 18.02 -57.17 -1.03 -29.07 16 11 O -0.99 -27.09 17.47 -57.17 -1.00 -28.09 16 12 N -1.07 -21.18 4.93 32.51 0.16 -21.02 16 13 C 0.21 3.72 6.13 -83.59 -0.51 3.21 16 14 C -0.16 -2.69 8.98 -39.41 -0.35 -3.04 16 15 C -0.08 -1.04 10.04 -39.58 -0.40 -1.43 16 16 C -0.14 -1.62 10.04 -39.57 -0.40 -2.02 16 17 C -0.09 -1.14 9.69 -39.44 -0.38 -1.53 16 18 C 0.06 0.99 6.04 -83.34 -0.50 0.48 16 19 N -0.40 -6.15 2.66 -61.95 -0.16 -6.32 16 20 C -0.05 -0.70 11.30 -16.48 -0.19 -0.89 16 21 C -0.03 -0.44 11.85 -17.82 -0.21 -0.65 16 22 N -0.49 -8.30 11.25 -14.48 -0.16 -8.46 16 23 C 0.19 3.27 10.85 -89.66 -0.97 2.29 16 24 H 0.30 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.41 7.55 7.93 -34.47 -0.27 7.28 16 26 H 0.17 3.26 4.45 -52.49 -0.23 3.02 16 27 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.17 1.65 8.06 -52.49 -0.42 1.22 16 31 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.20 3.39 8.03 -52.49 -0.42 2.97 16 LS Contribution 296.84 15.07 4.47 4.47 Total: -1.00 -33.60 296.84 -8.83 -42.42 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -2.54 Total: 12.87 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -3.78 Total: -25.79 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.56 Total: -58.32 kcal Atomic # 8 Polarization: -55.14 SS G_CDS: -2.03 Total: -57.17 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Atomic # 16 Polarization: 67.96 SS G_CDS: -0.50 Total: 67.46 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.60 -8.83 -42.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192929478.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.407 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds