Wall clock time and date at job start Tue Mar 31 2020 06:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00011 * 2 1 4 4 H 1.48498 * 109.46821 * 239.99838 * 3 2 1 5 5 H 1.48495 * 109.47294 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47011 * 119.99929 * 3 2 1 7 7 C 1.37875 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99903 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00181 * 0.02562 * 7 2 1 10 10 O 1.42093 * 106.40054 * 66.46169 * 9 7 2 11 11 O 1.42101 * 106.39906 * 293.53686 * 9 7 2 12 12 N 1.65603 * 107.21756 * 180.02562 * 9 7 2 13 13 C 1.39807 * 120.00220 * 67.73977 * 12 9 7 14 14 C 1.38764 * 120.10262 * 325.96142 * 13 12 9 15 15 C 1.38177 * 119.99279 * 180.02562 * 14 13 12 16 16 C 1.38299 * 120.18793 * 359.97438 * 15 14 13 17 17 C 1.38216 * 120.20505 * 0.02562 * 16 15 14 18 18 C 1.38653 * 120.00289 * 359.97438 * 17 16 15 19 19 N 1.40387 * 120.09185 * 180.02562 * 18 17 16 20 20 C 1.37058 * 126.46845 * 309.97940 * 19 18 17 21 21 C 1.34670 * 106.84007 * 180.02562 * 20 19 18 22 22 N 1.34111 * 108.18503 * 0.02562 * 21 20 19 23 23 C 1.30547 * 109.33630 * 359.72488 * 22 21 20 24 24 H 0.97006 * 119.99544 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99815 * 247.74451 * 12 9 7 26 26 H 1.08002 * 120.00307 * 359.97438 * 14 13 12 27 27 H 1.08001 * 119.90579 * 179.72116 * 15 14 13 28 28 H 1.08001 * 119.90406 * 180.02562 * 16 15 14 29 29 H 1.07994 * 120.00287 * 179.97438 * 17 16 15 30 30 H 1.08001 * 126.57742 * 0.02562 * 20 19 18 31 31 H 1.08002 * 125.91144 * 179.97438 * 21 20 19 32 32 H 1.08001 * 125.71595 * 180.26895 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1234 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2494 11 8 0.4509 -2.7949 1.2501 12 7 2.2482 -3.9355 0.0019 13 6 3.0587 -4.1366 1.1232 14 6 3.4717 -3.0539 1.8866 15 6 4.2732 -3.2552 2.9940 16 6 4.6657 -4.5340 3.3452 17 6 4.2589 -5.6181 2.5905 18 6 3.4546 -5.4256 1.4776 19 7 3.0400 -6.5254 0.7100 20 6 3.8409 -7.5206 0.2134 21 6 3.0389 -8.3675 -0.4596 22 7 1.7821 -7.9064 -0.3797 23 6 1.7691 -6.8064 0.3231 24 1 -0.4850 0.8401 -0.0004 25 1 2.3446 -4.5079 -0.7752 26 1 3.1674 -2.0539 1.6148 27 1 4.5976 -2.4111 3.5846 28 1 5.2918 -4.6861 4.2119 29 1 4.5676 -6.6153 2.8675 30 1 4.9101 -7.6086 0.3380 31 1 3.3534 -9.2628 -0.9754 32 1 0.8945 -6.2171 0.5557 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192929478.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:07 Heat of formation + Delta-G solvation = -17.155287 kcal Electronic energy + Delta-G solvation = -21291.099812 eV Core-core repulsion = 17957.434802 eV Total energy + Delta-G solvation = -3333.665010 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.29283 -40.39931 -37.61256 -36.36512 -36.10842 -35.26772 -34.97666 -30.96947 -30.49201 -29.59163 -28.42262 -24.44668 -23.89547 -22.10513 -21.99806 -20.95166 -19.87574 -19.47446 -18.38575 -18.33650 -17.22440 -16.48707 -16.15714 -16.03970 -15.83720 -15.61688 -15.19288 -14.97669 -14.72840 -14.32727 -14.17623 -14.01571 -13.48894 -13.07152 -12.95842 -12.85080 -12.69072 -12.63408 -12.41754 -12.31196 -11.85096 -11.35575 -11.25143 -11.08522 -10.99011 -9.83544 -9.55750 -9.22457 -8.82066 -7.58072 -0.08707 0.05880 0.34240 1.10638 1.35038 1.36803 1.50698 1.71158 2.08793 2.16604 2.52057 2.62212 2.66886 3.51263 3.65870 3.73146 3.85910 4.03754 4.05140 4.29942 4.31211 4.49144 4.51069 4.64031 4.77583 4.98050 5.08049 5.20934 5.24993 5.38181 5.52449 5.74007 5.76493 5.80448 5.96501 6.27075 6.68676 6.98120 8.14377 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020707 B = 0.006188 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.842558 B = 4523.845684 C = 5456.634246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.074 3.926 3 Si 0.993 3.007 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.239 1.239 7 C -1.030 5.030 8 H 0.132 0.868 9 S 2.705 3.295 10 O -1.036 7.036 11 O -1.021 7.021 12 N -1.061 6.061 13 C 0.168 3.832 14 C -0.185 4.185 15 C -0.074 4.074 16 C -0.117 4.117 17 C -0.081 4.081 18 C 0.057 3.943 19 N -0.403 5.403 20 C -0.037 4.037 21 C -0.047 4.047 22 N -0.515 5.515 23 C 0.161 3.839 24 H 0.302 0.698 25 H 0.417 0.583 26 H 0.146 0.854 27 H 0.162 0.838 28 H 0.177 0.823 29 H 0.162 0.838 30 H 0.215 0.785 31 H 0.201 0.799 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.145 -7.789 6.732 18.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.141 4.141 3 Si 0.811 3.189 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.162 1.162 7 C -1.164 5.164 8 H 0.150 0.850 9 S 2.808 3.192 10 O -1.026 7.026 11 O -1.011 7.011 12 N -0.806 5.806 13 C 0.069 3.931 14 C -0.206 4.206 15 C -0.093 4.093 16 C -0.137 4.137 17 C -0.101 4.101 18 C -0.038 4.038 19 N -0.082 5.082 20 C -0.168 4.168 21 C -0.193 4.193 22 N -0.234 5.234 23 C -0.120 4.120 24 H 0.112 0.888 25 H 0.252 0.748 26 H 0.163 0.837 27 H 0.180 0.820 28 H 0.194 0.806 29 H 0.179 0.821 30 H 0.232 0.768 31 H 0.217 0.783 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 13.252 -8.066 6.495 16.818 hybrid contribution 0.584 1.219 -0.569 1.467 sum 13.836 -6.846 5.926 16.536 Atomic orbital electron populations 1.69985 1.08940 1.32771 1.40392 1.26053 0.95348 1.05364 0.87297 0.85110 0.78733 0.73985 0.81107 1.17729 1.19073 1.16230 1.30730 1.07192 1.11053 1.67469 0.85025 1.00626 0.72516 0.74209 0.71849 1.93344 1.74304 1.88069 1.46905 1.93356 1.73606 1.87797 1.46318 1.53736 1.53200 1.51374 1.22333 1.17620 0.93828 0.93132 0.88492 1.21963 1.00893 0.99009 0.98761 1.21507 0.94164 0.99551 0.94028 1.21471 1.00794 0.90566 1.00819 1.21254 0.95969 1.01893 0.90960 1.17781 1.06507 0.83230 0.96305 1.43084 1.07904 1.18457 1.38723 1.23480 0.99563 0.90562 1.03207 1.22896 0.88055 1.03101 1.05269 1.70313 1.24677 1.09992 1.18400 1.25150 0.88313 0.97269 1.01256 0.88816 0.74816 0.83705 0.82004 0.80550 0.82067 0.76791 0.78260 0.79693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.28 13.19 21.45 0.28 -51.00 16 2 C 0.07 3.87 5.46 84.65 0.46 4.33 16 3 Si 0.99 38.58 29.54 68.60 2.03 40.60 16 4 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.24 -8.37 7.11 99.48 0.71 -7.67 16 7 C -1.03 -53.47 7.61 67.73 0.52 -52.96 16 8 H 0.13 6.01 6.83 -2.91 -0.02 5.99 16 9 S 2.71 144.19 4.65 -56.49 -0.26 143.93 16 10 O -1.04 -62.50 18.02 -128.00 -2.31 -64.81 16 11 O -1.02 -59.61 17.47 -128.00 -2.24 -61.85 16 12 N -1.06 -44.12 4.93 -51.06 -0.25 -44.37 16 13 C 0.17 6.07 6.13 38.28 0.23 6.30 16 14 C -0.18 -6.33 8.98 22.38 0.20 -6.13 16 15 C -0.07 -1.76 10.04 22.27 0.22 -1.54 16 16 C -0.12 -2.12 10.04 22.28 0.22 -1.90 16 17 C -0.08 -1.70 9.69 22.36 0.22 -1.48 16 18 C 0.06 1.67 6.04 38.15 0.23 1.90 16 19 N -0.40 -11.86 2.66 -349.92 -0.93 -12.79 16 20 C -0.04 -0.85 11.30 83.06 0.94 0.08 16 21 C -0.05 -1.20 11.85 83.53 0.99 -0.21 16 22 N -0.52 -17.60 11.25 -199.73 -2.25 -19.85 16 23 C 0.16 5.61 10.85 180.01 1.95 7.56 16 24 H 0.30 15.61 8.31 -92.70 -0.77 14.84 16 25 H 0.42 16.23 7.93 -96.74 -0.77 15.46 16 26 H 0.15 5.66 4.45 -2.91 -0.01 5.65 16 27 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 28 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 29 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.22 2.98 8.06 -2.91 -0.02 2.96 16 31 H 0.20 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.19 6.85 8.03 -2.91 -0.02 6.83 16 Total: -1.00 -78.27 296.84 0.68 -77.59 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: 0.41 Total: 36.57 kcal Atomic # 6 Polarization: -50.22 SS G_CDS: 6.19 Total: -44.03 kcal Atomic # 7 Polarization: -124.87 SS G_CDS: -3.14 Total: -128.01 kcal Atomic # 8 Polarization: -122.11 SS G_CDS: -4.54 Total: -126.66 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.60 kcal Atomic # 16 Polarization: 144.19 SS G_CDS: -0.26 Total: 143.93 kcal Total: -78.27 0.68 -77.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192929478.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.438 kcal (2) G-P(sol) polarization free energy of solvation -78.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds