Wall clock time and date at job start Tue Mar 31 2020 06:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99788 * 2 1 4 4 H 1.48503 * 109.47135 * 270.00487 * 3 2 1 5 5 H 1.48507 * 109.47282 * 30.00430 * 3 2 1 6 6 H 1.48497 * 109.47009 * 150.00591 * 3 2 1 7 7 C 1.37876 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99959 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00167 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40319 * 66.46064 * 9 7 2 11 11 O 1.42095 * 106.40327 * 293.54111 * 9 7 2 12 12 N 1.65601 * 107.22208 * 180.02562 * 9 7 2 13 13 C 1.39165 * 119.99796 * 64.99343 * 12 9 7 14 14 C 1.36181 * 126.28753 * 359.97438 * 13 12 9 15 15 C 1.39786 * 107.86900 * 180.24303 * 14 13 12 16 16 N 1.30869 * 108.48673 * 359.61060 * 15 14 13 17 17 N 1.36100 * 126.28142 * 180.02562 * 13 12 9 18 18 C 1.40158 * 126.11051 * 359.96094 * 17 13 12 19 19 C 1.38842 * 120.06384 * 324.72639 * 18 17 13 20 20 C 1.38119 * 119.92729 * 179.74692 * 19 18 17 21 21 C 1.38285 * 120.06764 * 0.52298 * 20 19 18 22 22 C 1.38279 * 120.13461 * 359.75102 * 21 20 19 23 23 C 1.38120 * 120.06852 * 359.97438 * 22 21 20 24 24 H 0.96999 * 120.00591 * 359.97438 * 1 2 3 25 25 H 0.96997 * 119.99835 * 245.00107 * 12 9 7 26 26 H 1.08002 * 126.06194 * 359.97153 * 14 13 12 27 27 H 1.07997 * 125.75748 * 179.73891 * 15 14 13 28 28 H 1.07992 * 120.03706 * 0.02562 * 19 18 17 29 29 H 1.08005 * 119.96704 * 180.27536 * 20 19 18 30 30 H 1.08000 * 119.93330 * 179.76572 * 21 20 19 31 31 H 1.07995 * 119.96611 * 179.97438 * 22 21 20 32 32 H 1.07998 * 120.03391 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1237 -2.7200 -0.0005 10 8 0.4511 -2.7950 -1.2501 11 8 0.4521 -2.7956 1.2494 12 7 2.2485 -3.9354 -0.0005 13 6 3.0950 -4.1000 1.0917 14 6 3.1101 -3.3397 2.2215 15 6 4.1118 -3.8374 3.0600 16 7 4.6757 -4.8608 2.4707 17 7 4.0604 -5.0498 1.2265 18 6 4.3809 -6.0407 0.2885 19 6 3.3811 -6.6181 -0.4826 20 6 3.7008 -7.5906 -1.4098 21 6 5.0138 -7.9969 -1.5629 22 6 6.0110 -7.4277 -0.7924 23 6 5.6983 -6.4507 0.1326 24 1 -0.4851 0.8400 0.0004 25 1 2.3173 -4.5324 -0.7619 26 1 2.4658 -2.4985 2.4304 27 1 4.3744 -3.4450 4.0312 28 1 2.3551 -6.3040 -0.3607 29 1 2.9241 -8.0370 -2.0131 30 1 5.2608 -8.7602 -2.2859 31 1 7.0353 -7.7474 -0.9139 32 1 6.4776 -6.0063 0.7338 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192938767.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:10 Heat of formation + Delta-G solvation = -0.735729 kcal Electronic energy + Delta-G solvation = -21028.151641 eV Core-core repulsion = 17695.198637 eV Total energy + Delta-G solvation = -3332.953004 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.62344 -39.93604 -37.68505 -36.47446 -36.34370 -35.22547 -34.39867 -32.03132 -30.04941 -29.70443 -28.32752 -24.40125 -24.12970 -22.32463 -21.94543 -20.88426 -19.84197 -19.41451 -18.31628 -17.63783 -17.01209 -16.74058 -16.55068 -16.01580 -15.92441 -15.57747 -15.33535 -14.70223 -14.47434 -14.20180 -14.06250 -13.80098 -13.45645 -13.12306 -13.04245 -12.89304 -12.69157 -12.61113 -12.52007 -12.30657 -12.18765 -11.80285 -11.27344 -11.11078 -11.00257 -10.08257 -9.41345 -9.22009 -8.81106 -7.55846 -0.15531 -0.12642 0.27337 0.99437 1.27864 1.35638 1.38604 1.53478 1.78527 2.17676 2.47777 2.54112 2.67717 3.43686 3.57067 3.82062 3.83357 3.92954 4.07229 4.18461 4.35814 4.40337 4.48519 4.58932 4.79692 4.96317 5.08248 5.21073 5.25996 5.30851 5.44298 5.48263 5.68359 5.82513 5.84545 6.19637 6.57587 6.71912 8.16045 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.021127 B = 0.005360 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.019896 B = 5222.169962 C = 5627.214979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.078 3.922 3 Si 0.993 3.007 4 H -0.256 1.256 5 H -0.259 1.259 6 H -0.249 1.249 7 C -1.024 5.024 8 H 0.119 0.881 9 S 2.713 3.287 10 O -1.021 7.021 11 O -1.010 7.010 12 N -1.035 6.035 13 C 0.338 3.662 14 C -0.322 4.322 15 C 0.094 3.906 16 N -0.309 5.309 17 N -0.349 5.349 18 C 0.126 3.874 19 C -0.169 4.169 20 C -0.092 4.092 21 C -0.117 4.117 22 C -0.091 4.091 23 C -0.124 4.124 24 H 0.303 0.697 25 H 0.423 0.577 26 H 0.156 0.844 27 H 0.235 0.765 28 H 0.116 0.884 29 H 0.159 0.841 30 H 0.167 0.833 31 H 0.165 0.835 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.356 -11.240 -1.256 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.136 4.136 3 Si 0.810 3.190 4 H -0.180 1.180 5 H -0.183 1.183 6 H -0.172 1.172 7 C -1.159 5.159 8 H 0.137 0.863 9 S 2.814 3.186 10 O -1.011 7.011 11 O -1.000 7.000 12 N -0.783 5.783 13 C 0.117 3.883 14 C -0.355 4.355 15 C -0.093 4.093 16 N -0.128 5.128 17 N -0.131 5.131 18 C 0.035 3.965 19 C -0.190 4.190 20 C -0.111 4.111 21 C -0.135 4.135 22 C -0.109 4.109 23 C -0.144 4.144 24 H 0.113 0.887 25 H 0.260 0.740 26 H 0.173 0.827 27 H 0.251 0.749 28 H 0.134 0.866 29 H 0.177 0.823 30 H 0.185 0.815 31 H 0.183 0.817 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.040 -12.178 -1.129 17.162 hybrid contribution -0.455 1.595 -0.356 1.696 sum 11.585 -10.583 -1.484 15.761 Atomic orbital electron populations 1.69952 1.08600 1.32743 1.40587 1.25943 0.95382 1.05005 0.87309 0.85087 0.79186 0.74631 0.80057 1.18014 1.18265 1.17205 1.30537 1.06876 1.10932 1.67538 0.86335 1.00591 0.72064 0.73740 0.72178 1.93366 1.73378 1.87815 1.46519 1.93363 1.73321 1.87342 1.45944 1.53739 1.50588 1.50091 1.23834 1.17961 0.88653 0.92098 0.89590 1.21445 1.09949 1.08618 0.95480 1.24307 0.92198 0.91938 1.00812 1.77396 1.21945 1.21818 0.91689 1.46102 1.27776 1.24169 1.15073 1.17970 0.95627 0.91302 0.91587 1.21258 0.97948 0.99851 0.99956 1.21402 0.98722 0.94768 0.96169 1.21706 0.91844 1.00273 0.99672 1.21499 1.01739 0.94137 0.93561 1.21158 0.93267 0.99721 1.00286 0.88694 0.73994 0.82677 0.74933 0.86616 0.82316 0.81519 0.81720 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.93 13.19 21.45 0.28 -50.64 16 2 C 0.08 4.18 5.46 84.65 0.46 4.64 16 3 Si 0.99 40.12 29.54 68.60 2.03 42.15 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 6 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 7 C -1.02 -55.16 8.96 67.73 0.61 -54.55 16 8 H 0.12 5.93 7.81 -2.91 -0.02 5.91 16 9 S 2.71 144.85 4.58 -56.49 -0.26 144.59 16 10 O -1.02 -59.47 18.02 -128.00 -2.31 -61.78 16 11 O -1.01 -58.76 16.20 -128.00 -2.07 -60.83 16 12 N -1.04 -44.59 5.48 -55.03 -0.30 -44.89 16 13 C 0.34 14.11 7.32 131.17 0.96 15.07 16 14 C -0.32 -13.26 9.28 22.17 0.21 -13.06 16 15 C 0.09 3.09 12.00 85.21 1.02 4.11 16 16 N -0.31 -10.82 12.33 -57.06 -0.70 -11.53 16 17 N -0.35 -12.94 3.76 -184.85 -0.69 -13.63 16 18 C 0.13 3.96 6.39 38.10 0.24 4.20 16 19 C -0.17 -4.74 8.44 22.39 0.19 -4.55 16 20 C -0.09 -1.81 10.04 22.25 0.22 -1.59 16 21 C -0.12 -1.80 10.04 22.29 0.22 -1.58 16 22 C -0.09 -1.58 10.04 22.25 0.22 -1.35 16 23 C -0.12 -3.13 9.77 22.39 0.22 -2.91 16 24 H 0.30 15.50 8.31 -92.71 -0.77 14.73 16 25 H 0.42 15.86 6.24 -96.75 -0.60 15.25 16 26 H 0.16 7.00 6.48 -2.91 -0.02 6.98 16 27 H 0.23 5.18 8.06 -2.91 -0.02 5.16 16 28 H 0.12 3.47 6.33 -2.91 -0.02 3.45 16 29 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 31 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -76.35 297.63 1.12 -75.23 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.57 Total: 32.90 kcal Atomic # 6 Polarization: -56.15 SS G_CDS: 4.58 Total: -51.57 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -1.42 Total: -120.69 kcal Atomic # 8 Polarization: -118.23 SS G_CDS: -4.38 Total: -122.61 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Atomic # 16 Polarization: 144.85 SS G_CDS: -0.26 Total: 144.59 kcal Total: -76.35 1.12 -75.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192938767.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.492 kcal (2) G-P(sol) polarization free energy of solvation -76.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds