Wall clock time and date at job start Tue Mar 31 2020 06:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99900 * 2 1 4 4 H 1.48495 * 109.47212 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47326 * 300.00062 * 3 2 1 6 6 H 1.48499 * 109.47355 * 60.00145 * 3 2 1 7 7 C 1.37877 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99802 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99869 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.40538 * 66.46290 * 9 7 2 11 11 O 1.42097 * 106.39943 * 293.53632 * 9 7 2 12 12 N 1.65599 * 107.21638 * 180.02562 * 9 7 2 13 13 C 1.39777 * 120.00249 * 67.81698 * 12 9 7 14 14 C 1.38766 * 120.10245 * 324.61021 * 13 12 9 15 15 C 1.38177 * 119.99460 * 179.97438 * 14 13 12 16 16 C 1.38315 * 120.19366 * 0.02770 * 15 14 13 17 17 C 1.38201 * 120.20120 * 359.70108 * 16 15 14 18 18 C 1.38671 * 120.00920 * 0.54667 * 17 16 15 19 19 N 1.40299 * 120.09879 * 179.74927 * 18 17 16 20 20 C 1.35192 * 126.05029 * 359.72582 * 19 18 17 21 21 C 1.35357 * 107.71523 * 179.97438 * 20 19 18 22 22 C 1.39882 * 107.93192 * 0.02562 * 21 20 19 23 23 N 1.30903 * 108.24275 * 359.97438 * 22 21 20 24 24 H 0.97005 * 119.99932 * 359.97438 * 1 2 3 25 25 H 0.97003 * 120.00305 * 247.81355 * 12 9 7 26 26 H 1.07999 * 120.00365 * 359.96292 * 14 13 12 27 27 H 1.07998 * 119.90489 * 180.02562 * 15 14 13 28 28 H 1.08001 * 119.89648 * 179.97438 * 16 15 14 29 29 H 1.08007 * 119.99588 * 180.30226 * 17 16 15 30 30 H 1.07995 * 126.14257 * 359.71910 * 20 19 18 31 31 H 1.07997 * 126.03073 * 179.97438 * 21 20 19 32 32 H 1.08005 * 125.87836 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 16 1.1235 -2.7199 -0.0019 10 8 0.4519 -2.7945 -1.2519 11 8 0.4510 -2.7960 1.2475 12 7 2.2483 -3.9353 -0.0016 13 6 3.0576 -4.1384 1.1198 14 6 3.4928 -3.0547 1.8694 15 6 4.2924 -3.2580 2.9779 16 6 4.6617 -4.5399 3.3435 17 6 4.2282 -5.6253 2.6061 18 6 3.4298 -5.4306 1.4891 19 7 2.9930 -6.5308 0.7360 20 6 3.2797 -7.8286 0.9835 21 6 2.6710 -8.5737 0.0314 22 6 1.9904 -7.7035 -0.8267 23 7 2.1823 -6.4791 -0.4054 24 1 -0.4850 0.8401 0.0004 25 1 2.3455 -4.5064 -0.7796 26 1 3.2069 -2.0525 1.5864 27 1 4.6300 -2.4136 3.5605 28 1 5.2871 -4.6932 4.2106 29 1 4.5146 -6.6251 2.8974 30 1 3.8887 -8.2032 1.7928 31 1 2.7056 -9.6499 -0.0516 32 1 1.4069 -7.9922 -1.6885 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192972035.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:02 Heat of formation + Delta-G solvation = 2.202328 kcal Electronic energy + Delta-G solvation = -21282.966152 eV Core-core repulsion = 17950.140551 eV Total energy + Delta-G solvation = -3332.825600 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.50576 -40.20875 -37.55717 -36.31160 -35.95650 -35.26558 -34.44077 -31.14830 -30.65536 -29.35201 -28.42880 -24.53275 -23.89157 -21.95385 -21.59652 -20.84629 -19.83211 -18.99295 -18.32206 -18.24038 -17.13975 -16.36173 -16.07621 -16.05741 -15.96490 -15.78546 -15.31154 -14.65046 -14.41497 -14.13198 -13.99650 -13.62983 -13.42810 -13.08035 -12.93613 -12.78832 -12.66113 -12.59788 -12.30937 -12.21132 -11.90519 -11.44440 -11.34524 -11.28928 -10.91595 -10.11412 -9.51130 -8.87108 -8.73927 -7.57902 -0.10851 0.11116 0.41922 1.25474 1.32907 1.33433 1.46463 1.52768 1.87574 2.17402 2.51361 2.74146 2.79626 3.45373 3.58750 3.90784 3.99785 4.09957 4.14884 4.34050 4.38015 4.51263 4.66222 4.77818 4.79005 5.06030 5.10012 5.21984 5.31414 5.34824 5.56488 5.65805 5.79375 5.88747 6.20952 6.32481 6.67777 6.69178 8.15393 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.006226 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.295400 B = 4496.101382 C = 5489.062268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.999 3.001 4 H -0.242 1.242 5 H -0.261 1.261 6 H -0.254 1.254 7 C -1.029 5.029 8 H 0.130 0.870 9 S 2.704 3.296 10 O -1.041 7.041 11 O -1.033 7.033 12 N -1.052 6.052 13 C 0.152 3.848 14 C -0.185 4.185 15 C -0.092 4.092 16 C -0.108 4.108 17 C -0.107 4.107 18 C 0.091 3.909 19 N -0.325 5.325 20 C 0.052 3.948 21 C -0.263 4.263 22 C 0.042 3.958 23 N -0.361 5.361 24 H 0.301 0.699 25 H 0.423 0.577 26 H 0.142 0.858 27 H 0.161 0.839 28 H 0.182 0.818 29 H 0.175 0.825 30 H 0.222 0.778 31 H 0.189 0.811 32 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.762 -12.680 6.577 19.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.143 4.143 3 Si 0.816 3.184 4 H -0.165 1.165 5 H -0.185 1.185 6 H -0.178 1.178 7 C -1.164 5.164 8 H 0.148 0.852 9 S 2.807 3.193 10 O -1.031 7.031 11 O -1.023 7.023 12 N -0.803 5.803 13 C 0.052 3.948 14 C -0.207 4.207 15 C -0.111 4.111 16 C -0.128 4.128 17 C -0.127 4.127 18 C -0.005 4.005 19 N -0.101 5.101 20 C -0.091 4.091 21 C -0.291 4.291 22 C -0.143 4.143 23 N -0.182 5.182 24 H 0.112 0.888 25 H 0.264 0.736 26 H 0.159 0.841 27 H 0.178 0.822 28 H 0.200 0.800 29 H 0.193 0.807 30 H 0.239 0.761 31 H 0.206 0.794 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 12.299 -11.403 6.447 17.968 hybrid contribution 0.080 0.095 -0.875 0.883 sum 12.379 -11.308 5.572 17.668 Atomic orbital electron populations 1.70008 1.09043 1.32624 1.40667 1.26142 0.95415 1.05546 0.87232 0.84982 0.79592 0.74300 0.79541 1.16452 1.18540 1.17792 1.30814 1.07088 1.11205 1.67274 0.85218 1.00542 0.72770 0.74265 0.71690 1.93307 1.74655 1.88305 1.46881 1.93317 1.74221 1.88068 1.46686 1.53733 1.52757 1.50977 1.22786 1.17541 0.94531 0.93164 0.89528 1.21979 1.00755 0.98886 0.99045 1.21455 0.95491 0.99768 0.94389 1.21439 1.00351 0.90289 1.00691 1.21154 0.97003 1.02706 0.91866 1.17912 1.03739 0.83317 0.95522 1.45931 1.37767 1.05358 1.21039 1.23456 1.01350 0.81963 1.02302 1.21987 1.06592 1.02268 0.98254 1.24705 0.99088 0.89544 1.00947 1.77108 1.15004 1.24709 1.01397 0.88823 0.73575 0.84089 0.82152 0.80042 0.80734 0.76144 0.79378 0.77341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.11 13.19 21.45 0.28 -53.82 16 2 C 0.07 3.91 5.46 84.66 0.46 4.38 16 3 Si 1.00 40.89 29.54 68.60 2.03 42.92 16 4 H -0.24 -9.07 7.11 99.48 0.71 -8.37 16 5 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 7 C -1.03 -57.94 7.65 67.73 0.52 -57.42 16 8 H 0.13 6.53 6.76 -2.91 -0.02 6.51 16 9 S 2.70 160.04 4.66 -56.49 -0.26 159.77 16 10 O -1.04 -68.18 18.02 -128.00 -2.31 -70.49 16 11 O -1.03 -66.74 17.50 -128.00 -2.24 -68.98 16 12 N -1.05 -51.43 5.11 -51.06 -0.26 -51.69 16 13 C 0.15 6.44 6.17 38.29 0.24 6.67 16 14 C -0.19 -7.25 9.05 22.38 0.20 -7.05 16 15 C -0.09 -2.52 10.04 22.27 0.22 -2.29 16 16 C -0.11 -2.20 10.04 22.28 0.22 -1.98 16 17 C -0.11 -2.42 9.45 22.36 0.21 -2.21 16 18 C 0.09 3.11 6.71 38.18 0.26 3.36 16 19 N -0.33 -10.64 3.80 -187.33 -0.71 -11.35 16 20 C 0.05 1.13 10.80 83.51 0.90 2.03 16 21 C -0.26 -5.44 10.81 22.00 0.24 -5.20 16 22 C 0.04 1.17 12.02 85.23 1.02 2.19 16 23 N -0.36 -13.52 9.30 -56.98 -0.53 -14.05 16 24 H 0.30 16.24 8.31 -92.70 -0.77 15.47 16 25 H 0.42 19.95 6.41 -96.74 -0.62 19.33 16 26 H 0.14 6.20 4.41 -2.91 -0.01 6.18 16 27 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 28 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 29 H 0.18 2.22 6.74 -2.91 -0.02 2.20 16 30 H 0.22 2.41 7.04 -2.91 -0.02 2.38 16 31 H 0.19 2.33 8.06 -2.91 -0.02 2.30 16 32 H 0.21 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -89.29 292.55 1.06 -88.23 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: 0.56 Total: 36.97 kcal Atomic # 6 Polarization: -62.02 SS G_CDS: 4.50 Total: -57.52 kcal Atomic # 7 Polarization: -129.69 SS G_CDS: -1.22 Total: -130.91 kcal Atomic # 8 Polarization: -134.92 SS G_CDS: -4.55 Total: -139.47 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Atomic # 16 Polarization: 160.04 SS G_CDS: -0.26 Total: 159.77 kcal Total: -89.29 1.06 -88.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972035.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.434 kcal (2) G-P(sol) polarization free energy of solvation -89.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds