Wall clock time and date at job start Tue Mar 31 2020 06:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99827 * 2 1 4 4 H 1.48501 * 109.47169 * 239.99993 * 3 2 1 5 5 H 1.48498 * 109.47103 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47376 * 120.00424 * 3 2 1 7 7 C 1.37880 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00116 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99597 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.40414 * 65.49842 * 9 7 2 11 11 O 1.42101 * 106.40378 * 292.57644 * 9 7 2 12 12 N 1.65606 * 107.21800 * 179.04022 * 9 7 2 13 13 C 1.39795 * 119.99494 * 298.45340 * 12 9 7 14 14 C 1.38916 * 120.01048 * 313.54114 * 13 12 9 15 15 C 1.38034 * 119.99539 * 179.72192 * 14 13 12 16 16 C 1.38848 * 120.00185 * 0.55727 * 15 14 13 17 17 N 1.40317 * 119.98995 * 179.69974 * 16 15 14 18 18 C 1.35190 * 126.04909 * 359.73963 * 17 16 15 19 19 C 1.35356 * 107.71274 * 179.83971 * 18 17 16 20 20 C 1.39884 * 107.93267 * 0.41736 * 19 18 17 21 21 N 1.30902 * 108.23996 * 359.74224 * 20 19 18 22 22 C 1.38841 * 120.02107 * 359.71693 * 16 15 14 23 23 C 1.38043 * 120.00649 * 0.02562 * 22 16 15 24 24 H 0.97001 * 120.00511 * 359.97438 * 1 2 3 25 25 H 0.96991 * 120.00128 * 118.72754 * 12 9 7 26 26 H 1.08002 * 120.00259 * 0.02562 * 14 13 12 27 27 H 1.07992 * 120.00088 * 180.29862 * 15 14 13 28 28 H 1.08000 * 126.14499 * 359.97438 * 18 17 16 29 29 H 1.07998 * 126.03128 * 180.15535 * 19 18 17 30 30 H 1.07997 * 125.88399 * 179.75478 * 20 19 18 31 31 H 1.08000 * 120.00115 * 180.02562 * 22 16 15 32 32 H 1.07993 * 120.00224 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4329 -2.7846 -1.2407 11 8 0.4702 -2.8061 1.2584 12 7 2.2482 -3.9353 -0.0277 13 6 3.1303 -4.0472 -1.1065 14 6 2.6519 -3.9561 -2.4075 15 6 3.5240 -4.0609 -3.4723 16 6 4.8776 -4.2690 -3.2433 17 7 5.7629 -4.3818 -4.3260 18 6 5.4319 -4.3123 -5.6349 19 6 6.5676 -4.4640 -6.3555 20 6 7.6263 -4.6413 -5.4586 21 7 7.1453 -4.5923 -4.2422 22 6 5.3553 -4.3658 -1.9432 23 6 4.4845 -4.2557 -0.8778 24 1 -0.4851 0.8400 0.0004 25 1 2.2922 -4.5718 0.7028 26 1 1.5985 -3.7984 -2.5857 27 1 3.1529 -3.9853 -4.4836 28 1 4.4398 -4.1606 -6.0339 29 1 6.6424 -4.4544 -7.4329 30 1 8.6622 -4.7925 -5.7240 31 1 6.4082 -4.5272 -1.7654 32 1 4.8561 -4.3315 0.1334 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192972058.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:35 Heat of formation + Delta-G solvation = -3.964355 kcal Electronic energy + Delta-G solvation = -20525.125889 eV Core-core repulsion = 17192.032881 eV Total energy + Delta-G solvation = -3333.093008 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.40974 -40.33577 -37.52692 -36.38860 -36.24009 -35.21098 -33.23412 -32.25190 -30.96712 -28.74782 -28.29598 -24.28223 -24.21716 -21.72884 -21.56467 -21.08304 -19.58717 -19.19796 -18.57510 -18.28798 -17.03012 -16.35934 -16.17341 -16.02989 -15.83844 -15.74934 -14.97713 -14.70985 -14.47672 -14.05206 -13.99666 -13.78704 -13.54780 -13.38833 -13.04008 -12.71351 -12.64535 -12.60190 -12.35328 -12.26531 -11.79696 -11.49362 -11.27036 -11.09650 -10.71827 -10.09508 -9.97234 -8.87181 -8.71282 -7.52680 -0.25256 0.22549 0.28014 1.21677 1.32226 1.33410 1.43624 1.46636 1.91184 2.17016 2.54530 2.67949 2.77480 3.51256 3.57748 3.81335 3.96210 4.02697 4.15057 4.29844 4.33383 4.50186 4.67699 4.76178 4.80235 5.03017 5.09270 5.15325 5.23955 5.24943 5.47149 5.63044 5.78547 5.85543 6.16155 6.29581 6.69610 6.74505 8.16666 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020206 B = 0.004655 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.374331 B = 6013.281537 C = 6655.798948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.077 3.923 3 Si 0.984 3.016 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.251 1.251 7 C -1.036 5.036 8 H 0.116 0.884 9 S 2.716 3.284 10 O -1.022 7.022 11 O -1.034 7.034 12 N -1.060 6.060 13 C 0.145 3.855 14 C -0.139 4.139 15 C -0.112 4.112 16 C 0.128 3.872 17 N -0.332 5.332 18 C 0.039 3.961 19 C -0.264 4.264 20 C 0.051 3.949 21 N -0.334 5.334 22 C -0.104 4.104 23 C -0.110 4.110 24 H 0.301 0.699 25 H 0.427 0.573 26 H 0.146 0.854 27 H 0.159 0.841 28 H 0.201 0.799 29 H 0.182 0.818 30 H 0.220 0.780 31 H 0.148 0.852 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.318 -7.375 -10.282 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.137 4.137 3 Si 0.803 3.197 4 H -0.178 1.178 5 H -0.184 1.184 6 H -0.175 1.175 7 C -1.170 5.170 8 H 0.134 0.866 9 S 2.818 3.182 10 O -1.011 7.011 11 O -1.024 7.024 12 N -0.810 5.810 13 C 0.048 3.952 14 C -0.161 4.161 15 C -0.133 4.133 16 C 0.035 3.965 17 N -0.108 5.108 18 C -0.103 4.103 19 C -0.292 4.292 20 C -0.135 4.135 21 N -0.153 5.153 22 C -0.125 4.125 23 C -0.132 4.132 24 H 0.111 0.889 25 H 0.264 0.736 26 H 0.164 0.836 27 H 0.176 0.824 28 H 0.218 0.782 29 H 0.200 0.800 30 H 0.236 0.764 31 H 0.166 0.834 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 12.331 -7.395 -9.053 16.991 hybrid contribution 0.222 0.817 -0.289 0.894 sum 12.552 -6.578 -9.342 16.974 Atomic orbital electron populations 1.69950 1.08503 1.32528 1.40961 1.25882 0.95346 1.04944 0.87507 0.85241 0.78922 0.74963 0.80618 1.17807 1.18404 1.17507 1.30734 1.06937 1.12153 1.67139 0.86599 1.00256 0.72342 0.73683 0.71933 1.93280 1.73241 1.87809 1.46784 1.93340 1.74908 1.88092 1.46106 1.53313 1.51867 1.46447 1.29373 1.17672 0.90024 1.00874 0.86664 1.21755 1.02098 1.00898 0.91342 1.20782 0.89872 1.01961 1.00639 1.17680 0.88232 1.04099 0.86445 1.45976 1.05624 1.54619 1.04580 1.23319 1.02948 1.01101 0.82897 1.21994 0.90700 1.14269 1.02271 1.24710 1.02230 0.97317 0.89225 1.77394 0.87942 1.25475 1.24497 1.20808 1.00982 1.01003 0.89667 1.21242 0.90220 1.01028 1.00711 0.88909 0.73566 0.83625 0.82370 0.78191 0.80044 0.76351 0.83412 0.82327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.59 13.19 21.45 0.28 -51.31 16 2 C 0.08 4.20 5.46 84.66 0.46 4.67 16 3 Si 0.98 40.90 29.54 68.60 2.03 42.93 16 4 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 5 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 7 C -1.04 -56.01 9.61 67.74 0.65 -55.36 16 8 H 0.12 5.76 7.81 -2.91 -0.02 5.74 16 9 S 2.72 141.06 4.92 -56.49 -0.28 140.78 16 10 O -1.02 -57.13 15.16 -128.00 -1.94 -59.07 16 11 O -1.03 -59.93 18.02 -128.00 -2.31 -62.23 16 12 N -1.06 -41.06 5.77 -51.29 -0.30 -41.36 16 13 C 0.14 5.17 6.13 38.19 0.23 5.41 16 14 C -0.14 -5.02 9.22 22.38 0.21 -4.82 16 15 C -0.11 -3.29 9.45 22.37 0.21 -3.08 16 16 C 0.13 3.76 6.69 38.07 0.25 4.01 16 17 N -0.33 -8.90 3.80 -187.64 -0.71 -9.61 16 18 C 0.04 0.81 10.80 83.51 0.90 1.71 16 19 C -0.26 -4.48 10.81 22.00 0.24 -4.24 16 20 C 0.05 0.97 12.03 85.23 1.02 2.00 16 21 N -0.33 -8.81 11.87 -56.98 -0.68 -9.48 16 22 C -0.10 -2.98 9.65 22.37 0.22 -2.76 16 23 C -0.11 -3.25 9.96 22.38 0.22 -3.02 16 24 H 0.30 15.70 8.31 -92.71 -0.77 14.93 16 25 H 0.43 13.60 8.96 -96.75 -0.87 12.73 16 26 H 0.15 5.93 5.72 -2.91 -0.02 5.91 16 27 H 0.16 3.61 6.73 -2.91 -0.02 3.59 16 28 H 0.20 2.86 7.04 -2.91 -0.02 2.84 16 29 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 30 H 0.22 2.32 8.06 -2.91 -0.02 2.29 16 31 H 0.15 3.86 7.69 -2.91 -0.02 3.84 16 32 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -76.36 299.82 1.03 -75.32 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.31 Total: 29.53 kcal Atomic # 6 Polarization: -60.11 SS G_CDS: 4.62 Total: -55.49 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -1.40 Total: -111.76 kcal Atomic # 8 Polarization: -117.06 SS G_CDS: -4.25 Total: -121.31 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: 141.06 SS G_CDS: -0.28 Total: 140.78 kcal Total: -76.36 1.03 -75.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972058.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.357 kcal (2) G-P(sol) polarization free energy of solvation -76.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds