Wall clock time and date at job start Tue Mar 31 2020 06:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00301 * 2 1 4 4 H 1.48502 * 109.47198 * 270.00236 * 3 2 1 5 5 H 1.48500 * 109.47136 * 29.99986 * 3 2 1 6 6 H 1.48501 * 109.47461 * 150.00251 * 3 2 1 7 7 C 1.37881 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00064 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99873 * 180.27357 * 7 2 1 10 10 O 1.42104 * 106.40617 * 304.80127 * 9 7 2 11 11 O 1.42095 * 106.40411 * 77.72161 * 9 7 2 12 12 N 1.65608 * 107.21679 * 191.26342 * 9 7 2 13 13 C 1.39664 * 119.99681 * 298.46844 * 12 9 7 14 14 C 1.38979 * 120.04603 * 313.58391 * 13 12 9 15 15 C 1.38126 * 120.05320 * 179.70367 * 14 13 12 16 16 C 1.38196 * 120.14086 * 0.59107 * 15 14 13 17 17 C 1.38848 * 120.08252 * 359.68494 * 16 15 14 18 18 N 1.40234 * 120.02607 * 179.97438 * 17 16 15 19 19 C 1.37098 * 126.47652 * 0.02562 * 18 17 16 20 20 C 1.34651 * 106.83637 * 179.97438 * 19 18 17 21 21 N 1.34129 * 108.19877 * 0.02562 * 20 19 18 22 22 C 1.30526 * 109.34557 * 359.74399 * 21 20 19 23 23 C 1.38705 * 119.94597 * 0.02562 * 17 16 15 24 24 H 0.97003 * 119.99849 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99804 * 118.46402 * 12 9 7 26 26 H 1.07997 * 119.96897 * 359.97090 * 14 13 12 27 27 H 1.08003 * 119.92431 * 180.29552 * 15 14 13 28 28 H 1.07996 * 119.95608 * 179.70329 * 16 15 14 29 29 H 1.08003 * 126.58093 * 359.97438 * 19 18 17 30 30 H 1.08003 * 125.90046 * 180.02562 * 20 19 18 31 31 H 1.07998 * 125.71212 * 180.25100 * 22 21 20 32 32 H 1.08006 * 120.07037 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 16 3.7664 -1.1941 0.0068 10 8 4.1724 -0.4130 -1.1087 11 8 4.1622 -0.9080 1.3411 12 7 4.2579 -2.7447 -0.3046 13 6 3.9102 -3.7763 0.5703 14 6 4.0634 -3.6074 1.9412 15 6 3.7139 -4.6253 2.8070 16 6 3.2225 -5.8186 2.3126 17 6 3.0724 -5.9957 0.9437 18 7 2.5741 -7.2073 0.4433 19 6 2.1954 -8.2994 1.1805 20 6 1.7809 -9.2356 0.3059 21 7 1.9016 -8.7347 -0.9325 22 6 2.3709 -7.5187 -0.8632 23 6 3.4167 -4.9737 0.0714 24 1 -0.4850 0.8401 -0.0004 25 1 4.7871 -2.9363 -1.0946 26 1 4.4521 -2.6779 2.3302 27 1 3.8293 -4.4901 3.8723 28 1 2.9546 -6.6143 2.9919 29 1 2.2239 -8.3911 2.2562 30 1 1.4145 -10.2198 0.5581 31 1 2.5669 -6.8698 -1.7039 32 1 3.3004 -5.1091 -0.9938 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972349.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:16 Heat of formation + Delta-G solvation = 18.164360 kcal Electronic energy + Delta-G solvation = -20698.160142 eV Core-core repulsion = 17366.026707 eV Total energy + Delta-G solvation = -3332.133435 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.31613 -39.31632 -35.99111 -35.25023 -34.72125 -33.41752 -33.16454 -30.42423 -29.07423 -28.59723 -26.56988 -23.60943 -22.93590 -20.96699 -20.60901 -19.46274 -18.73853 -17.53182 -17.08683 -16.34348 -16.03171 -15.50239 -15.26087 -15.08948 -14.48635 -14.05390 -14.00064 -13.60488 -13.51619 -13.38156 -13.00327 -12.88678 -12.26131 -11.70031 -11.55537 -11.43269 -11.11025 -10.81465 -10.79828 -10.56959 -10.18440 -10.13155 -10.02678 -9.36257 -9.22413 -8.79330 -8.47847 -8.06304 -6.92906 -5.50363 0.90356 1.25261 1.76716 2.30996 2.64238 3.00100 3.05651 3.06563 3.16423 3.77640 3.83164 3.93881 4.46713 4.57587 4.68727 4.70411 4.92472 5.03982 5.15095 5.31752 5.35866 5.39175 5.58625 5.76473 5.84388 5.97657 6.06410 6.39586 6.45296 6.61978 6.65875 6.82955 7.19846 7.32514 7.43334 7.92904 8.07393 8.55218 10.19014 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.024903 B = 0.004634 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.102955 B = 6040.335419 C = 6339.943672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.151 3.849 3 Si 0.831 3.169 4 H -0.244 1.244 5 H -0.260 1.260 6 H -0.242 1.242 7 C -1.010 5.010 8 H 0.124 0.876 9 S 2.667 3.333 10 O -1.000 7.000 11 O -0.996 6.996 12 N -1.063 6.063 13 C 0.204 3.796 14 C -0.150 4.150 15 C -0.070 4.070 16 C -0.152 4.152 17 C 0.141 3.859 18 N -0.404 5.404 19 C -0.053 4.053 20 C -0.029 4.029 21 N -0.490 5.490 22 C 0.190 3.810 23 C -0.154 4.154 24 H 0.283 0.717 25 H 0.418 0.582 26 H 0.165 0.835 27 H 0.138 0.862 28 H 0.129 0.871 29 H 0.177 0.823 30 H 0.172 0.828 31 H 0.208 0.792 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.984 -11.719 3.752 13.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.070 4.070 3 Si 0.653 3.347 4 H -0.168 1.168 5 H -0.185 1.185 6 H -0.165 1.165 7 C -1.145 5.145 8 H 0.141 0.859 9 S 2.770 3.230 10 O -0.990 6.990 11 O -0.986 6.986 12 N -0.808 5.808 13 C 0.106 3.894 14 C -0.171 4.171 15 C -0.090 4.090 16 C -0.172 4.172 17 C 0.048 3.952 18 N -0.082 5.082 19 C -0.183 4.183 20 C -0.175 4.175 21 N -0.207 5.207 22 C -0.091 4.091 23 C -0.177 4.177 24 H 0.094 0.906 25 H 0.253 0.747 26 H 0.182 0.818 27 H 0.155 0.845 28 H 0.147 0.853 29 H 0.194 0.806 30 H 0.190 0.810 31 H 0.225 0.775 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.153 -11.178 3.302 13.180 hybrid contribution -0.147 0.749 0.212 0.792 sum 6.006 -10.429 3.513 12.538 Atomic orbital electron populations 1.69981 1.06573 1.29309 1.38498 1.24456 0.94891 0.98904 0.88710 0.87424 0.81483 0.84017 0.81791 1.16798 1.18467 1.16546 1.30238 1.14515 1.02515 1.67229 0.85851 1.01826 0.77776 0.69724 0.73647 1.93406 1.85447 1.66135 1.54058 1.93411 1.85295 1.81549 1.38346 1.53601 1.66823 1.25741 1.34607 1.17073 0.94880 0.88013 0.89462 1.22104 1.01256 1.01910 0.91816 1.20881 0.96358 0.91606 1.00128 1.20774 1.04644 0.99448 0.92373 1.17518 0.99931 0.84484 0.93280 1.43221 1.46077 1.10941 1.07990 1.22753 1.08469 0.88003 0.99114 1.22325 1.06373 1.00550 0.88278 1.70330 1.18142 1.07611 1.24651 1.25299 1.02982 0.94857 0.85993 1.20721 1.03849 0.93279 0.99875 0.90636 0.74745 0.81754 0.84466 0.85350 0.80590 0.81043 0.77509 0.84695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.80 13.96 55.43 0.77 -22.03 16 2 C 0.15 4.17 5.47 -17.82 -0.10 4.07 16 3 Si 0.83 20.49 26.08 -169.99 -4.43 16.06 16 4 H -0.24 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.24 -6.00 6.23 56.52 0.35 -5.65 16 7 C -1.01 -26.94 10.17 30.60 0.31 -26.63 16 8 H 0.12 3.38 8.06 -52.49 -0.42 2.96 16 9 S 2.67 62.08 4.10 -107.50 -0.44 61.64 16 10 O -1.00 -24.95 15.79 -57.17 -0.90 -25.85 16 11 O -1.00 -24.28 14.38 -57.17 -0.82 -25.10 16 12 N -1.06 -18.81 5.76 32.40 0.19 -18.63 16 13 C 0.20 3.42 6.13 -83.81 -0.51 2.90 16 14 C -0.15 -2.45 9.22 -39.35 -0.36 -2.82 16 15 C -0.07 -0.93 10.03 -39.64 -0.40 -1.33 16 16 C -0.15 -1.88 9.47 -39.37 -0.37 -2.26 16 17 C 0.14 1.94 6.63 -83.61 -0.55 1.38 16 18 N -0.40 -5.32 2.99 -62.12 -0.19 -5.50 16 19 C -0.05 -0.60 10.85 -16.47 -0.18 -0.78 16 20 C -0.03 -0.35 11.85 -17.82 -0.21 -0.56 16 21 N -0.49 -7.05 11.25 -14.47 -0.16 -7.21 16 22 C 0.19 2.52 11.91 -89.63 -1.07 1.46 16 23 C -0.15 -2.25 9.39 -39.21 -0.37 -2.62 16 24 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.42 5.94 8.96 -34.48 -0.31 5.63 16 26 H 0.17 2.93 5.72 -52.49 -0.30 2.63 16 27 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 28 H 0.13 1.22 6.81 -52.49 -0.36 0.86 16 29 H 0.18 1.43 7.15 -52.48 -0.38 1.06 16 30 H 0.17 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.21 2.18 7.06 -52.49 -0.37 1.81 16 32 H 0.14 1.69 6.77 -52.48 -0.36 1.33 16 LS Contribution 290.81 15.07 4.38 4.38 Total: -1.00 -32.91 290.81 -7.94 -40.85 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -2.52 Total: 8.56 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -3.81 Total: -27.17 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.61 Total: -53.37 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -1.72 Total: -50.95 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.43 Total: 16.06 kcal Atomic # 16 Polarization: 62.08 SS G_CDS: -0.44 Total: 61.64 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.91 -7.94 -40.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972349.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.013 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds