Wall clock time and date at job start Tue Mar 31 2020 06:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00301 * 2 1 4 4 H 1.48502 * 109.47198 * 270.00236 * 3 2 1 5 5 H 1.48500 * 109.47136 * 29.99986 * 3 2 1 6 6 H 1.48501 * 109.47461 * 150.00251 * 3 2 1 7 7 C 1.37881 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00064 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99873 * 180.27357 * 7 2 1 10 10 O 1.42104 * 106.40617 * 304.80127 * 9 7 2 11 11 O 1.42095 * 106.40411 * 77.72161 * 9 7 2 12 12 N 1.65608 * 107.21679 * 191.26342 * 9 7 2 13 13 C 1.39664 * 119.99681 * 298.46844 * 12 9 7 14 14 C 1.38979 * 120.04603 * 313.58391 * 13 12 9 15 15 C 1.38126 * 120.05320 * 179.70367 * 14 13 12 16 16 C 1.38196 * 120.14086 * 0.59107 * 15 14 13 17 17 C 1.38848 * 120.08252 * 359.68494 * 16 15 14 18 18 N 1.40234 * 120.02607 * 179.97438 * 17 16 15 19 19 C 1.37098 * 126.47652 * 0.02562 * 18 17 16 20 20 C 1.34651 * 106.83637 * 179.97438 * 19 18 17 21 21 N 1.34129 * 108.19877 * 0.02562 * 20 19 18 22 22 C 1.30526 * 109.34557 * 359.74399 * 21 20 19 23 23 C 1.38705 * 119.94597 * 0.02562 * 17 16 15 24 24 H 0.97003 * 119.99849 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99804 * 118.46402 * 12 9 7 26 26 H 1.07997 * 119.96897 * 359.97090 * 14 13 12 27 27 H 1.08003 * 119.92431 * 180.29552 * 15 14 13 28 28 H 1.07996 * 119.95608 * 179.70329 * 16 15 14 29 29 H 1.08003 * 126.58093 * 359.97438 * 19 18 17 30 30 H 1.08003 * 125.90046 * 180.02562 * 20 19 18 31 31 H 1.07998 * 125.71212 * 180.25100 * 22 21 20 32 32 H 1.08006 * 120.07037 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 16 3.7664 -1.1941 0.0068 10 8 4.1724 -0.4130 -1.1087 11 8 4.1622 -0.9080 1.3411 12 7 4.2579 -2.7447 -0.3046 13 6 3.9102 -3.7763 0.5703 14 6 4.0634 -3.6074 1.9412 15 6 3.7139 -4.6253 2.8070 16 6 3.2225 -5.8186 2.3126 17 6 3.0724 -5.9957 0.9437 18 7 2.5741 -7.2073 0.4433 19 6 2.1954 -8.2994 1.1805 20 6 1.7809 -9.2356 0.3059 21 7 1.9016 -8.7347 -0.9325 22 6 2.3709 -7.5187 -0.8632 23 6 3.4167 -4.9737 0.0714 24 1 -0.4850 0.8401 -0.0004 25 1 4.7871 -2.9363 -1.0946 26 1 4.4521 -2.6779 2.3302 27 1 3.8293 -4.4901 3.8723 28 1 2.9546 -6.6143 2.9919 29 1 2.2239 -8.3911 2.2562 30 1 1.4145 -10.2198 0.5581 31 1 2.5669 -6.8698 -1.7039 32 1 3.3004 -5.1091 -0.9938 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192972349.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:15 Heat of formation + Delta-G solvation = -4.713799 kcal Electronic energy + Delta-G solvation = -20699.152213 eV Core-core repulsion = 17366.026707 eV Total energy + Delta-G solvation = -3333.125506 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.27300 -40.45223 -37.86210 -36.67080 -36.50047 -35.24244 -34.50149 -31.47468 -30.05423 -29.76428 -28.62533 -24.67673 -24.03079 -22.06677 -21.61978 -21.16200 -20.04993 -19.23174 -18.81463 -17.72176 -17.25413 -17.03768 -16.47173 -16.23473 -16.06021 -15.48919 -15.30524 -15.02922 -14.86704 -14.57630 -14.31479 -14.15917 -13.69400 -13.50637 -13.21885 -13.03828 -12.73513 -12.58403 -12.38177 -12.03828 -11.81427 -11.45974 -11.38612 -11.12857 -11.08790 -9.79795 -9.56142 -9.20864 -9.00183 -7.58924 -0.25094 -0.10476 0.32065 1.05494 1.10729 1.20186 1.31511 1.65651 1.85538 2.11790 2.28360 2.41858 2.68907 3.11834 3.66112 3.71675 3.79567 3.87627 4.03140 4.10426 4.24871 4.34682 4.52293 4.65593 4.72310 4.89715 4.93534 5.30361 5.31675 5.42509 5.42773 5.67112 5.79053 5.96045 6.09916 6.25725 6.47945 6.98852 8.17455 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.024903 B = 0.004634 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.102955 B = 6040.335419 C = 6339.943672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.109 3.891 3 Si 0.852 3.148 4 H -0.239 1.239 5 H -0.226 1.226 6 H -0.246 1.246 7 C -1.032 5.032 8 H 0.104 0.896 9 S 2.695 3.305 10 O -1.018 7.018 11 O -1.010 7.010 12 N -1.050 6.050 13 C 0.173 3.827 14 C -0.175 4.175 15 C -0.065 4.065 16 C -0.139 4.139 17 C 0.137 3.863 18 N -0.410 5.410 19 C -0.049 4.049 20 C -0.045 4.045 21 N -0.519 5.519 22 C 0.173 3.827 23 C -0.157 4.157 24 H 0.293 0.707 25 H 0.433 0.567 26 H 0.146 0.854 27 H 0.170 0.830 28 H 0.166 0.834 29 H 0.212 0.788 30 H 0.197 0.803 31 H 0.223 0.777 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.404 -12.930 4.988 15.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.109 4.109 3 Si 0.671 3.329 4 H -0.163 1.163 5 H -0.149 1.149 6 H -0.170 1.170 7 C -1.165 5.165 8 H 0.122 0.878 9 S 2.797 3.203 10 O -1.008 7.008 11 O -0.999 6.999 12 N -0.801 5.801 13 C 0.076 3.924 14 C -0.197 4.197 15 C -0.084 4.084 16 C -0.159 4.159 17 C 0.044 3.956 18 N -0.089 5.089 19 C -0.179 4.179 20 C -0.190 4.190 21 N -0.237 5.237 22 C -0.108 4.108 23 C -0.181 4.181 24 H 0.104 0.896 25 H 0.271 0.729 26 H 0.163 0.837 27 H 0.188 0.812 28 H 0.184 0.816 29 H 0.229 0.771 30 H 0.214 0.786 31 H 0.239 0.761 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.541 -12.393 4.533 14.729 hybrid contribution -0.284 0.901 -0.135 0.954 sum 6.258 -11.492 4.398 13.805 Atomic orbital electron populations 1.70009 1.07536 1.30680 1.39682 1.25175 0.95645 1.01476 0.88591 0.87095 0.81016 0.82348 0.82469 1.16277 1.14896 1.16998 1.30761 1.17257 1.01727 1.66768 0.87818 1.00817 0.75928 0.70675 0.72912 1.93374 1.85080 1.67763 1.54596 1.93395 1.84775 1.82723 1.39029 1.52942 1.66886 1.24517 1.35721 1.17267 0.97143 0.88449 0.89549 1.22155 1.02767 1.02434 0.92309 1.21236 0.95019 0.90801 1.01341 1.21203 1.02540 0.99890 0.92297 1.17674 0.99574 0.84505 0.93871 1.43315 1.46303 1.11071 1.08203 1.23374 1.06959 0.86900 1.00639 1.22855 1.06550 1.01880 0.87700 1.70322 1.18919 1.08304 1.26178 1.25691 1.03252 0.95073 0.86775 1.20850 1.03346 0.92841 1.01035 0.89646 0.72925 0.83667 0.81244 0.81625 0.77101 0.78638 0.76110 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.02 13.96 21.45 0.30 -47.72 16 2 C 0.11 6.05 5.47 84.66 0.46 6.51 16 3 Si 0.85 40.99 26.08 68.60 1.79 42.78 16 4 H -0.24 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.23 -9.57 7.11 99.48 0.71 -8.86 16 6 H -0.25 -11.98 6.23 99.48 0.62 -11.36 16 7 C -1.03 -56.07 10.17 67.74 0.69 -55.38 16 8 H 0.10 5.87 8.06 -2.91 -0.02 5.85 16 9 S 2.70 126.00 4.10 -56.49 -0.23 125.77 16 10 O -1.02 -50.62 15.79 -128.00 -2.02 -52.64 16 11 O -1.01 -49.40 14.38 -128.00 -1.84 -51.24 16 12 N -1.05 -37.15 5.76 -51.41 -0.30 -37.45 16 13 C 0.17 5.72 6.13 38.20 0.23 5.96 16 14 C -0.17 -5.63 9.22 22.42 0.21 -5.42 16 15 C -0.07 -1.55 10.03 22.23 0.22 -1.33 16 16 C -0.14 -2.97 9.47 22.41 0.21 -2.76 16 17 C 0.14 3.46 6.63 38.05 0.25 3.71 16 18 N -0.41 -9.84 2.99 -350.45 -1.05 -10.89 16 19 C -0.05 -0.96 10.85 83.05 0.90 -0.06 16 20 C -0.04 -0.98 11.85 83.52 0.99 0.01 16 21 N -0.52 -14.29 11.25 -199.70 -2.25 -16.53 16 22 C 0.17 4.38 11.91 180.00 2.14 6.52 16 23 C -0.16 -4.44 9.39 22.51 0.21 -4.23 16 24 H 0.29 14.86 8.31 -92.71 -0.77 14.09 16 25 H 0.43 12.19 8.96 -96.74 -0.87 11.32 16 26 H 0.15 5.21 5.72 -2.91 -0.02 5.19 16 27 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 28 H 0.17 2.26 6.81 -2.91 -0.02 2.24 16 29 H 0.21 2.40 7.15 -2.91 -0.02 2.37 16 30 H 0.20 3.03 8.06 -2.91 -0.02 3.00 16 31 H 0.22 4.51 7.06 -2.91 -0.02 4.49 16 32 H 0.15 3.61 6.77 -2.91 -0.02 3.59 16 Total: -1.00 -71.33 290.81 1.16 -70.17 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.23 Total: 24.21 kcal Atomic # 6 Polarization: -52.98 SS G_CDS: 6.53 Total: -46.45 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -3.29 Total: -112.59 kcal Atomic # 8 Polarization: -100.02 SS G_CDS: -3.86 Total: -103.88 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.79 Total: 42.78 kcal Atomic # 16 Polarization: 126.00 SS G_CDS: -0.23 Total: 125.77 kcal Total: -71.33 1.16 -70.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972349.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.454 kcal (2) G-P(sol) polarization free energy of solvation -71.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds