Wall clock time and date at job start Tue Mar 31 2020 06:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99874 * 2 1 4 4 H 1.48501 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46773 * 299.99607 * 3 2 1 6 6 H 1.48495 * 109.47204 * 59.99740 * 3 2 1 7 7 C 1.37872 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00334 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99878 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.39885 * 71.33416 * 9 7 2 11 11 O 1.42092 * 106.40772 * 298.41724 * 9 7 2 12 12 N 1.65602 * 107.21899 * 184.87366 * 9 7 2 13 13 C 1.39671 * 119.99946 * 64.22809 * 12 9 7 14 14 C 1.38979 * 120.03728 * 75.42724 * 13 12 9 15 15 C 1.38128 * 120.05649 * 180.30018 * 14 13 12 16 16 C 1.38187 * 120.14198 * 359.71852 * 15 14 13 17 17 C 1.38873 * 120.08079 * 0.02562 * 16 15 14 18 18 N 1.40181 * 120.02950 * 179.97438 * 17 16 15 19 19 C 1.35231 * 126.05348 * 359.97438 * 18 17 16 20 20 C 1.35320 * 107.71304 * 179.97438 * 19 18 17 21 21 C 1.39926 * 107.93043 * 359.97438 * 20 19 18 22 22 N 1.30876 * 108.24514 * 359.75887 * 21 20 19 23 23 C 1.38723 * 119.94290 * 359.97438 * 17 16 15 24 24 H 0.97003 * 119.99944 * 0.02562 * 1 2 3 25 25 H 0.97006 * 119.99638 * 244.23539 * 12 9 7 26 26 H 1.08001 * 119.97636 * 0.02562 * 14 13 12 27 27 H 1.08006 * 119.92966 * 179.69723 * 15 14 13 28 28 H 1.07999 * 119.96258 * 180.02562 * 16 15 14 29 29 H 1.07993 * 126.14443 * 359.95463 * 19 18 17 30 30 H 1.07996 * 126.03638 * 180.02562 * 20 19 18 31 31 H 1.07996 * 125.87760 * 180.02562 * 21 20 19 32 32 H 1.07995 * 120.07264 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1236 -2.7199 0.0019 10 8 0.5446 -2.8501 -1.2893 11 8 0.3616 -2.7424 1.2010 12 7 2.2435 -3.9324 0.1367 13 6 3.0215 -4.0392 1.2917 14 6 2.4643 -4.5408 2.4619 15 6 3.2317 -4.6408 3.6060 16 6 4.5565 -4.2483 3.5895 17 6 5.1207 -3.7512 2.4219 18 7 6.4646 -3.3528 2.4065 19 6 7.3203 -3.3985 3.4526 20 6 8.5158 -2.9280 3.0275 21 6 8.3878 -2.5838 1.6773 22 7 7.1608 -2.8430 1.3029 23 6 4.3532 -3.6493 1.2709 24 1 -0.4850 0.8401 -0.0004 25 1 2.3591 -4.5684 -0.5867 26 1 1.4292 -4.8485 2.4780 27 1 2.7952 -5.0263 4.5157 28 1 5.1540 -4.3281 4.4857 29 1 7.0908 -3.7474 4.4485 30 1 9.4109 -2.8355 3.6246 31 1 9.1684 -2.1783 1.0508 32 1 4.7899 -3.2634 0.3617 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192978731.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:13 Heat of formation + Delta-G solvation = 23.258126 kcal Electronic energy + Delta-G solvation = -20758.115933 eV Core-core repulsion = 17426.203380 eV Total energy + Delta-G solvation = -3331.912553 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.47828 -39.07990 -35.34559 -34.82121 -34.05284 -33.11026 -32.81627 -30.58425 -29.20137 -28.31156 -26.15237 -23.44503 -22.71928 -20.65114 -20.50740 -19.13622 -18.45628 -17.41333 -16.41559 -16.03800 -15.95998 -15.24284 -15.19020 -14.94816 -14.36943 -13.97885 -13.69018 -13.49637 -13.44343 -12.83756 -12.53734 -12.05844 -11.79196 -11.59255 -11.25935 -11.23626 -10.80782 -10.66755 -10.58639 -10.39279 -10.27857 -10.19260 -9.50162 -9.27081 -9.15777 -8.87165 -8.48125 -7.94107 -6.72837 -5.34215 0.93456 1.36929 2.15851 2.29843 2.43053 2.74063 3.05563 3.13828 3.23360 3.88101 4.04423 4.40358 4.62502 4.65178 4.69660 4.97218 5.06226 5.29352 5.45044 5.51420 5.61131 5.65422 5.71952 5.83827 5.93959 6.24619 6.34470 6.49389 6.57429 6.59568 6.71622 6.92429 7.22994 7.31520 7.62298 7.78518 7.96452 8.87688 10.21541 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.006013 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.771379 B = 4655.315733 C = 5758.335772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.135 3.865 3 Si 0.918 3.082 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.271 1.271 7 C -1.014 5.014 8 H 0.104 0.896 9 S 2.706 3.294 10 O -1.001 7.001 11 O -0.992 6.992 12 N -1.087 6.087 13 C 0.188 3.812 14 C -0.114 4.114 15 C -0.087 4.087 16 C -0.145 4.145 17 C 0.154 3.846 18 N -0.314 5.314 19 C 0.052 3.948 20 C -0.269 4.269 21 C 0.048 3.952 22 N -0.284 5.284 23 C -0.115 4.115 24 H 0.291 0.709 25 H 0.412 0.588 26 H 0.140 0.860 27 H 0.136 0.864 28 H 0.128 0.872 29 H 0.177 0.823 30 H 0.151 0.849 31 H 0.187 0.813 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.551 -7.606 8.079 17.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.083 4.083 3 Si 0.742 3.258 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.196 1.196 7 C -1.148 5.148 8 H 0.122 0.878 9 S 2.807 3.193 10 O -0.991 6.991 11 O -0.982 6.982 12 N -0.836 5.836 13 C 0.092 3.908 14 C -0.135 4.135 15 C -0.107 4.107 16 C -0.167 4.167 17 C 0.061 3.939 18 N -0.090 5.090 19 C -0.091 4.091 20 C -0.298 4.298 21 C -0.139 4.139 22 N -0.104 5.104 23 C -0.138 4.138 24 H 0.101 0.899 25 H 0.248 0.752 26 H 0.157 0.843 27 H 0.154 0.846 28 H 0.146 0.854 29 H 0.194 0.806 30 H 0.169 0.831 31 H 0.204 0.796 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 11.465 -7.550 7.147 15.477 hybrid contribution 1.729 1.085 0.396 2.079 sum 13.193 -6.465 7.543 16.515 Atomic orbital electron populations 1.69902 1.06717 1.30677 1.40143 1.24715 0.94451 1.00764 0.88383 0.86152 0.80673 0.80368 0.78595 1.18491 1.19480 1.19569 1.30471 1.06203 1.11305 1.66804 0.87801 1.00868 0.72106 0.73291 0.73024 1.93396 1.75962 1.87311 1.42470 1.93366 1.68676 1.87153 1.48994 1.53944 1.57428 1.48732 1.23505 1.16994 0.89442 0.96937 0.87445 1.21707 1.01158 0.98224 0.92429 1.20801 0.92448 0.99165 0.98248 1.20728 0.96452 1.03440 0.96044 1.17335 0.80132 1.00862 0.95542 1.45915 1.07757 1.47407 1.07891 1.22612 0.90314 1.01801 0.94380 1.21549 0.99007 1.12709 0.96492 1.24053 0.94693 0.99478 0.95711 1.77544 1.06213 1.18240 1.08358 1.21198 0.93662 1.00756 0.98169 0.89896 0.75247 0.84254 0.84611 0.85405 0.80629 0.83128 0.79607 0.83893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.88 13.10 55.43 0.73 -24.15 16 2 C 0.13 3.81 5.46 -17.82 -0.10 3.71 16 3 Si 0.92 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -1.01 -28.32 9.66 30.60 0.30 -28.02 16 8 H 0.10 2.74 7.81 -52.49 -0.41 2.33 16 9 S 2.71 71.36 5.02 -107.50 -0.54 70.82 16 10 O -1.00 -28.97 18.02 -57.18 -1.03 -30.00 16 11 O -0.99 -28.25 16.98 -57.18 -0.97 -29.22 16 12 N -1.09 -21.80 5.70 32.40 0.18 -21.61 16 13 C 0.19 3.50 5.79 -83.81 -0.49 3.02 16 14 C -0.11 -1.90 9.29 -39.35 -0.37 -2.27 16 15 C -0.09 -1.16 10.03 -39.64 -0.40 -1.56 16 16 C -0.15 -1.88 9.45 -39.36 -0.37 -2.25 16 17 C 0.15 2.43 6.68 -83.62 -0.56 1.87 16 18 N -0.31 -4.73 3.80 -10.72 -0.04 -4.77 16 19 C 0.05 0.60 10.80 -17.09 -0.18 0.41 16 20 C -0.27 -2.83 10.81 -39.99 -0.43 -3.26 16 21 C 0.05 0.58 12.03 -17.33 -0.21 0.37 16 22 N -0.28 -4.55 11.87 30.64 0.36 -4.18 16 23 C -0.12 -2.06 9.58 -39.20 -0.38 -2.44 16 24 H 0.29 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.41 6.93 8.95 -34.47 -0.31 6.62 16 26 H 0.14 2.30 7.96 -52.49 -0.42 1.88 16 27 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 28 H 0.13 1.18 6.73 -52.49 -0.35 0.83 16 29 H 0.18 1.33 7.04 -52.49 -0.37 0.96 16 30 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.19 1.60 8.06 -52.49 -0.42 1.17 16 32 H 0.14 2.65 7.69 -52.49 -0.40 2.25 16 LS Contribution 303.60 15.07 4.58 4.58 Total: -1.00 -36.89 303.60 -7.60 -44.50 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -2.67 Total: 8.31 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: -3.18 Total: -30.42 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 1.23 Total: -54.72 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -2.00 Total: -59.22 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 71.36 SS G_CDS: -0.54 Total: 70.82 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -36.89 -7.60 -44.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978731.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.754 kcal (2) G-P(sol) polarization free energy of solvation -36.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds