Wall clock time and date at job start Tue Mar 31 2020 06:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99874 * 2 1 4 4 H 1.48501 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46773 * 299.99607 * 3 2 1 6 6 H 1.48495 * 109.47204 * 59.99740 * 3 2 1 7 7 C 1.37872 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00334 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99878 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.39885 * 71.33416 * 9 7 2 11 11 O 1.42092 * 106.40772 * 298.41724 * 9 7 2 12 12 N 1.65602 * 107.21899 * 184.87366 * 9 7 2 13 13 C 1.39671 * 119.99946 * 64.22809 * 12 9 7 14 14 C 1.38979 * 120.03728 * 75.42724 * 13 12 9 15 15 C 1.38128 * 120.05649 * 180.30018 * 14 13 12 16 16 C 1.38187 * 120.14198 * 359.71852 * 15 14 13 17 17 C 1.38873 * 120.08079 * 0.02562 * 16 15 14 18 18 N 1.40181 * 120.02950 * 179.97438 * 17 16 15 19 19 C 1.35231 * 126.05348 * 359.97438 * 18 17 16 20 20 C 1.35320 * 107.71304 * 179.97438 * 19 18 17 21 21 C 1.39926 * 107.93043 * 359.97438 * 20 19 18 22 22 N 1.30876 * 108.24514 * 359.75887 * 21 20 19 23 23 C 1.38723 * 119.94290 * 359.97438 * 17 16 15 24 24 H 0.97003 * 119.99944 * 0.02562 * 1 2 3 25 25 H 0.97006 * 119.99638 * 244.23539 * 12 9 7 26 26 H 1.08001 * 119.97636 * 0.02562 * 14 13 12 27 27 H 1.08006 * 119.92966 * 179.69723 * 15 14 13 28 28 H 1.07999 * 119.96258 * 180.02562 * 16 15 14 29 29 H 1.07993 * 126.14443 * 359.95463 * 19 18 17 30 30 H 1.07996 * 126.03638 * 180.02562 * 20 19 18 31 31 H 1.07996 * 125.87760 * 180.02562 * 21 20 19 32 32 H 1.07995 * 120.07264 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1236 -2.7199 0.0019 10 8 0.5446 -2.8501 -1.2893 11 8 0.3616 -2.7424 1.2010 12 7 2.2435 -3.9324 0.1367 13 6 3.0215 -4.0392 1.2917 14 6 2.4643 -4.5408 2.4619 15 6 3.2317 -4.6408 3.6060 16 6 4.5565 -4.2483 3.5895 17 6 5.1207 -3.7512 2.4219 18 7 6.4646 -3.3528 2.4065 19 6 7.3203 -3.3985 3.4526 20 6 8.5158 -2.9280 3.0275 21 6 8.3878 -2.5838 1.6773 22 7 7.1608 -2.8430 1.3029 23 6 4.3532 -3.6493 1.2709 24 1 -0.4850 0.8401 -0.0004 25 1 2.3591 -4.5684 -0.5867 26 1 1.4292 -4.8485 2.4780 27 1 2.7952 -5.0263 4.5157 28 1 5.1540 -4.3281 4.4857 29 1 7.0908 -3.7474 4.4485 30 1 9.4109 -2.8355 3.6246 31 1 9.1684 -2.1783 1.0508 32 1 4.7899 -3.2634 0.3617 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192978731.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:12 Heat of formation + Delta-G solvation = -5.090910 kcal Electronic energy + Delta-G solvation = -20759.345239 eV Core-core repulsion = 17426.203380 eV Total energy + Delta-G solvation = -3333.141859 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.43369 -40.28444 -37.49557 -36.28792 -36.20429 -35.22742 -33.94926 -31.60550 -30.32131 -29.50805 -28.32219 -24.51724 -23.88243 -21.76994 -21.50960 -21.11837 -19.75332 -19.17103 -18.40358 -17.48596 -17.16559 -16.90541 -16.47085 -16.19870 -15.87855 -15.71339 -15.28741 -14.69972 -14.39851 -14.07945 -13.81833 -13.64785 -13.42150 -13.09213 -13.02840 -12.85362 -12.62370 -12.55392 -12.38823 -12.38190 -11.65201 -11.33938 -11.32017 -11.20299 -10.77695 -10.10853 -9.82192 -9.02822 -8.82620 -7.54643 -0.19956 0.00858 0.42829 1.24075 1.25396 1.26904 1.43392 1.45035 1.90440 2.14069 2.50426 2.68916 2.78841 3.50326 3.66127 3.83705 3.98837 4.07989 4.20742 4.22703 4.37467 4.51008 4.57053 4.76925 4.80419 5.02916 5.08300 5.20302 5.23629 5.34688 5.43729 5.66359 5.76413 5.83726 6.20105 6.28116 6.69424 6.72051 8.14495 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.006013 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.771379 B = 4655.315733 C = 5758.335772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.077 3.923 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.253 1.253 6 H -0.253 1.253 7 C -1.036 5.036 8 H 0.108 0.892 9 S 2.719 3.281 10 O -1.038 7.038 11 O -1.020 7.020 12 N -1.072 6.072 13 C 0.154 3.846 14 C -0.136 4.136 15 C -0.072 4.072 16 C -0.128 4.128 17 C 0.149 3.851 18 N -0.336 5.336 19 C 0.050 3.950 20 C -0.264 4.264 21 C 0.047 3.953 22 N -0.348 5.348 23 C -0.138 4.138 24 H 0.301 0.699 25 H 0.424 0.576 26 H 0.133 0.867 27 H 0.180 0.820 28 H 0.177 0.823 29 H 0.218 0.782 30 H 0.186 0.814 31 H 0.214 0.786 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.202 -7.338 10.926 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.137 4.137 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.177 1.177 6 H -0.177 1.177 7 C -1.170 5.170 8 H 0.126 0.874 9 S 2.821 3.179 10 O -1.028 7.028 11 O -1.009 7.009 12 N -0.826 5.826 13 C 0.059 3.941 14 C -0.157 4.157 15 C -0.091 4.091 16 C -0.149 4.149 17 C 0.056 3.944 18 N -0.112 5.112 19 C -0.092 4.092 20 C -0.292 4.292 21 C -0.139 4.139 22 N -0.167 5.167 23 C -0.161 4.161 24 H 0.111 0.889 25 H 0.261 0.739 26 H 0.151 0.849 27 H 0.197 0.803 28 H 0.194 0.806 29 H 0.234 0.766 30 H 0.204 0.796 31 H 0.230 0.770 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.120 -7.297 9.989 18.773 hybrid contribution 1.091 0.902 -0.408 1.473 sum 15.211 -6.395 9.581 19.081 Atomic orbital electron populations 1.69966 1.08377 1.32353 1.41131 1.25873 0.95384 1.04887 0.87556 0.85204 0.79052 0.75683 0.79908 1.18288 1.17694 1.17742 1.30798 1.06625 1.12632 1.66908 0.87387 1.00149 0.72369 0.73590 0.71811 1.93332 1.77567 1.88013 1.43921 1.93314 1.70144 1.87803 1.49672 1.53179 1.56880 1.47570 1.25005 1.17231 0.89820 0.99647 0.87396 1.21852 1.01488 0.99252 0.93111 1.21291 0.92293 0.97258 0.98273 1.21251 0.96478 1.00697 0.96438 1.17596 0.80806 1.00420 0.95614 1.45999 1.07723 1.48677 1.08777 1.23437 0.89842 1.00794 0.95098 1.22037 1.00033 1.11327 0.95840 1.24716 0.94093 0.97930 0.97168 1.77516 1.08109 1.20779 1.10289 1.21056 0.93807 1.02409 0.98824 0.88885 0.73870 0.84928 0.80263 0.80570 0.76567 0.79630 0.76990 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.39 13.10 21.45 0.28 -53.11 16 2 C 0.08 4.39 5.46 84.65 0.46 4.85 16 3 Si 0.98 43.29 29.54 68.60 2.03 45.32 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 6 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 7 C -1.04 -59.67 9.66 67.73 0.65 -59.01 16 8 H 0.11 5.92 7.81 -2.91 -0.02 5.90 16 9 S 2.72 149.70 5.02 -56.49 -0.28 149.42 16 10 O -1.04 -62.91 18.02 -128.00 -2.31 -65.21 16 11 O -1.02 -60.30 16.98 -128.00 -2.17 -62.47 16 12 N -1.07 -45.34 5.70 -51.41 -0.29 -45.63 16 13 C 0.15 5.93 5.79 38.20 0.22 6.16 16 14 C -0.14 -4.49 9.29 22.42 0.21 -4.29 16 15 C -0.07 -1.70 10.03 22.23 0.22 -1.48 16 16 C -0.13 -2.84 9.45 22.41 0.21 -2.63 16 17 C 0.15 4.51 6.68 38.07 0.25 4.76 16 18 N -0.34 -9.53 3.80 -187.82 -0.71 -10.25 16 19 C 0.05 0.94 10.80 83.50 0.90 1.84 16 20 C -0.26 -4.58 10.81 22.01 0.24 -4.34 16 21 C 0.05 1.06 12.03 85.24 1.03 2.09 16 22 N -0.35 -10.97 11.87 -56.97 -0.68 -11.65 16 23 C -0.14 -5.09 9.58 22.51 0.22 -4.88 16 24 H 0.30 16.14 8.31 -92.71 -0.77 15.37 16 25 H 0.42 15.26 8.95 -96.74 -0.87 14.40 16 26 H 0.13 4.47 7.96 -2.91 -0.02 4.45 16 27 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 28 H 0.18 2.14 6.73 -2.91 -0.02 2.13 16 29 H 0.22 1.98 7.04 -2.91 -0.02 1.96 16 30 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.21 3.19 8.06 -2.91 -0.02 3.16 16 32 H 0.12 4.87 7.69 -2.91 -0.02 4.84 16 Total: -1.00 -84.53 303.60 0.78 -83.74 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.31 Total: 26.76 kcal Atomic # 6 Polarization: -61.54 SS G_CDS: 4.62 Total: -56.92 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -1.40 Total: -120.63 kcal Atomic # 8 Polarization: -123.20 SS G_CDS: -4.48 Total: -127.68 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 149.70 SS G_CDS: -0.28 Total: 149.42 kcal Total: -84.53 0.78 -83.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978731.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.653 kcal (2) G-P(sol) polarization free energy of solvation -84.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds