Wall clock time and date at job start Tue Mar 31 2020 06:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99915 * 2 1 4 4 H 1.48502 * 109.46815 * 269.99523 * 3 2 1 5 5 H 1.48499 * 109.47431 * 29.99422 * 3 2 1 6 6 H 1.48497 * 109.47373 * 149.99469 * 3 2 1 7 7 C 1.37876 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00414 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99874 * 0.02562 * 7 2 1 10 10 O 1.42107 * 106.39880 * 66.46364 * 9 7 2 11 11 O 1.42095 * 106.40544 * 293.54221 * 9 7 2 12 12 N 1.65594 * 107.21798 * 180.02562 * 9 7 2 13 13 C 1.39700 * 120.00189 * 67.81668 * 12 9 7 14 14 C 1.37796 * 120.24375 * 324.91315 * 13 12 9 15 15 C 1.39185 * 120.81052 * 179.97438 * 14 13 12 16 16 C 1.36577 * 121.01175 * 359.97438 * 15 14 13 17 17 O 1.35959 * 120.07630 * 179.97438 * 16 15 14 18 18 C 1.40882 * 119.84912 * 0.25692 * 16 15 14 19 19 C 1.40490 * 121.19271 * 180.30572 * 18 16 15 20 20 C 1.36119 * 119.67018 * 179.75277 * 19 18 16 21 21 C 1.39358 * 120.96705 * 359.69873 * 20 19 18 22 22 C 1.36146 * 120.95910 * 0.02613 * 21 20 19 23 23 C 1.40403 * 119.66597 * 359.97438 * 22 21 20 24 24 H 0.96998 * 120.00349 * 0.02562 * 1 2 3 25 25 H 0.97006 * 120.00151 * 247.82130 * 12 9 7 26 26 H 1.07999 * 119.59215 * 359.97427 * 14 13 12 27 27 H 1.08005 * 119.48955 * 179.97438 * 15 14 13 28 28 H 0.96695 * 114.00123 * 89.99738 * 17 16 15 29 29 H 1.08003 * 120.15890 * 359.47145 * 19 18 16 30 30 H 1.07997 * 119.51150 * 179.72380 * 20 19 18 31 31 H 1.07998 * 119.51843 * 180.02562 * 21 20 19 32 32 H 1.07998 * 120.16656 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1236 -2.7200 0.0005 10 8 0.4520 -2.7955 -1.2496 11 8 0.4509 -2.7951 1.2499 12 7 2.2483 -3.9354 0.0019 13 6 3.0572 -4.1373 1.1229 14 6 3.4859 -3.0631 1.8720 15 6 4.2916 -3.2507 2.9913 16 6 4.6786 -4.5021 3.3780 17 8 5.4663 -4.6634 4.4744 18 6 4.2645 -5.6251 2.6348 19 6 4.6407 -6.9254 3.0108 20 6 4.2188 -7.9887 2.2730 21 6 3.4123 -7.8082 1.1510 22 6 3.0238 -6.5630 0.7607 23 6 3.4397 -5.4425 1.4974 24 1 -0.4850 0.8400 -0.0004 25 1 2.3456 -4.5071 -0.7756 26 1 3.1931 -2.0634 1.5870 27 1 4.6157 -2.3935 3.5628 28 1 4.9742 -4.7758 5.2991 29 1 5.2652 -7.0802 3.8782 30 1 4.5132 -8.9869 2.5617 31 1 3.0907 -8.6685 0.5828 32 1 2.3990 -6.4378 -0.1112 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192978938.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:31 Heat of formation + Delta-G solvation = -89.177635 kcal Electronic energy + Delta-G solvation = -21060.856979 eV Core-core repulsion = 17691.776095 eV Total energy + Delta-G solvation = -3369.080884 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.46659 -37.54698 -36.63590 -35.36269 -34.17546 -33.68084 -33.17271 -30.87953 -30.19557 -27.42301 -26.33316 -23.26597 -23.01857 -21.39317 -19.33475 -18.16356 -17.89423 -17.73922 -16.90740 -16.19405 -16.00585 -15.20375 -14.95508 -14.35292 -14.20273 -13.92858 -13.73404 -13.61922 -13.21827 -12.67856 -12.51795 -12.17067 -11.69230 -11.51544 -11.29471 -11.17759 -11.09406 -10.73104 -10.67406 -10.49960 -10.39247 -10.36271 -10.03179 -9.35274 -9.22537 -8.89239 -8.47375 -7.17629 -6.83213 -5.48343 0.70497 1.17208 1.99661 2.18709 3.00730 3.08071 3.13642 3.17466 3.94294 4.12919 4.35683 4.47778 4.52377 4.85142 4.94778 5.03493 5.19682 5.42203 5.48889 5.55539 5.66046 5.80497 5.95906 6.05240 6.25541 6.30229 6.42988 6.48621 6.53079 6.65842 6.86036 6.97798 7.08159 7.19889 7.62172 7.79066 7.81551 8.73461 10.10458 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.005774 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.813904 B = 4848.547308 C = 5821.539624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.134 3.866 3 Si 0.923 3.077 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.260 1.260 7 C -1.022 5.022 8 H 0.111 0.889 9 S 2.700 3.300 10 O -0.996 6.996 11 O -0.987 6.987 12 N -1.067 6.067 13 C 0.202 3.798 14 C -0.166 4.166 15 C -0.093 4.093 16 C 0.068 3.932 17 O -0.494 6.494 18 C -0.050 4.050 19 C -0.104 4.104 20 C -0.119 4.119 21 C -0.127 4.127 22 C -0.096 4.096 23 C -0.062 4.062 24 H 0.293 0.707 25 H 0.412 0.588 26 H 0.167 0.833 27 H 0.133 0.867 28 H 0.382 0.618 29 H 0.128 0.872 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.833 -9.949 5.238 14.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.085 4.085 3 Si 0.746 3.254 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.184 1.184 7 C -1.155 5.155 8 H 0.129 0.871 9 S 2.800 3.200 10 O -0.986 6.986 11 O -0.977 6.977 12 N -0.808 5.808 13 C 0.103 3.897 14 C -0.188 4.188 15 C -0.112 4.112 16 C 0.023 3.977 17 O -0.303 6.303 18 C -0.051 4.051 19 C -0.122 4.122 20 C -0.137 4.137 21 C -0.145 4.145 22 C -0.114 4.114 23 C -0.065 4.065 24 H 0.104 0.896 25 H 0.246 0.754 26 H 0.184 0.816 27 H 0.151 0.849 28 H 0.237 0.763 29 H 0.146 0.854 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.066 -9.846 4.896 13.637 hybrid contribution 0.546 0.854 -0.068 1.016 sum 8.612 -8.992 4.828 13.354 Atomic orbital electron populations 1.69880 1.06859 1.31099 1.39047 1.24756 0.94502 1.00902 0.88319 0.86114 0.80197 0.79707 0.79368 1.19080 1.19861 1.18359 1.30527 1.06195 1.11215 1.67594 0.87064 1.01142 0.72126 0.73489 0.73194 1.93402 1.72419 1.87305 1.45461 1.93411 1.71958 1.87024 1.45326 1.54312 1.53409 1.52122 1.20930 1.17356 0.91768 0.92239 0.88346 1.21721 0.99181 1.00726 0.97150 1.20886 0.96465 0.96786 0.97100 1.17921 0.97206 0.91581 0.90983 1.84831 1.34249 1.94879 1.16380 1.18110 0.97717 0.93785 0.95528 1.20876 0.99958 0.91256 1.00106 1.20799 0.98416 0.98743 0.95707 1.20772 0.99085 0.97035 0.97601 1.20927 0.99105 0.91986 0.99379 1.17863 0.99918 0.92565 0.96154 0.89599 0.75405 0.81561 0.84949 0.76317 0.85409 0.86233 0.86092 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.66 13.19 55.43 0.73 -22.93 16 2 C 0.13 3.56 5.46 -17.82 -0.10 3.46 16 3 Si 0.92 19.58 29.54 -169.99 -5.02 14.56 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -1.02 -26.47 7.65 30.60 0.23 -26.23 16 8 H 0.11 2.60 6.79 -52.49 -0.36 2.25 16 9 S 2.70 69.33 4.65 -107.50 -0.50 68.83 16 10 O -1.00 -28.13 18.02 -57.17 -1.03 -29.16 16 11 O -0.99 -28.07 17.49 -57.17 -1.00 -29.07 16 12 N -1.07 -21.34 5.45 32.63 0.18 -21.16 16 13 C 0.20 3.90 6.17 -83.36 -0.51 3.39 16 14 C -0.17 -3.21 9.02 -39.39 -0.36 -3.56 16 15 C -0.09 -1.53 9.87 -39.83 -0.39 -1.92 16 16 C 0.07 1.05 6.67 -39.18 -0.26 0.79 16 17 O -0.49 -6.18 12.70 -19.61 -0.25 -6.43 16 18 C -0.05 -0.79 5.75 -106.74 -0.61 -1.40 16 19 C -0.10 -1.35 9.56 -39.50 -0.38 -1.73 16 20 C -0.12 -1.39 9.95 -39.93 -0.40 -1.79 16 21 C -0.13 -1.56 9.95 -39.92 -0.40 -1.96 16 22 C -0.10 -1.41 9.46 -39.52 -0.37 -1.79 16 23 C -0.06 -1.06 5.75 -106.69 -0.61 -1.67 16 24 H 0.29 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.41 6.88 7.77 -34.47 -0.27 6.61 16 26 H 0.17 3.45 4.38 -52.49 -0.23 3.22 16 27 H 0.13 1.86 8.06 -52.48 -0.42 1.44 16 28 H 0.38 3.01 9.06 45.56 0.41 3.42 16 29 H 0.13 1.39 7.60 -52.48 -0.40 0.99 16 30 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 32 H 0.13 1.67 6.90 -52.49 -0.36 1.31 16 LS Contribution 292.62 15.07 4.41 4.41 Total: -1.00 -34.61 292.62 -8.25 -42.86 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -1.61 Total: 12.51 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: -4.16 Total: -34.42 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.91 Total: -44.09 kcal Atomic # 8 Polarization: -62.39 SS G_CDS: -2.28 Total: -64.66 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 16 Polarization: 69.33 SS G_CDS: -0.50 Total: 68.83 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.61 -8.25 -42.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978938.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.316 kcal (2) G-P(sol) polarization free energy of solvation -34.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds