Wall clock time and date at job start Tue Mar 31 2020 06:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99915 * 2 1 4 4 H 1.48502 * 109.46815 * 269.99523 * 3 2 1 5 5 H 1.48499 * 109.47431 * 29.99422 * 3 2 1 6 6 H 1.48497 * 109.47373 * 149.99469 * 3 2 1 7 7 C 1.37876 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00414 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99874 * 0.02562 * 7 2 1 10 10 O 1.42107 * 106.39880 * 66.46364 * 9 7 2 11 11 O 1.42095 * 106.40544 * 293.54221 * 9 7 2 12 12 N 1.65594 * 107.21798 * 180.02562 * 9 7 2 13 13 C 1.39700 * 120.00189 * 67.81668 * 12 9 7 14 14 C 1.37796 * 120.24375 * 324.91315 * 13 12 9 15 15 C 1.39185 * 120.81052 * 179.97438 * 14 13 12 16 16 C 1.36577 * 121.01175 * 359.97438 * 15 14 13 17 17 O 1.35959 * 120.07630 * 179.97438 * 16 15 14 18 18 C 1.40882 * 119.84912 * 0.25692 * 16 15 14 19 19 C 1.40490 * 121.19271 * 180.30572 * 18 16 15 20 20 C 1.36119 * 119.67018 * 179.75277 * 19 18 16 21 21 C 1.39358 * 120.96705 * 359.69873 * 20 19 18 22 22 C 1.36146 * 120.95910 * 0.02613 * 21 20 19 23 23 C 1.40403 * 119.66597 * 359.97438 * 22 21 20 24 24 H 0.96998 * 120.00349 * 0.02562 * 1 2 3 25 25 H 0.97006 * 120.00151 * 247.82130 * 12 9 7 26 26 H 1.07999 * 119.59215 * 359.97427 * 14 13 12 27 27 H 1.08005 * 119.48955 * 179.97438 * 15 14 13 28 28 H 0.96695 * 114.00123 * 89.99738 * 17 16 15 29 29 H 1.08003 * 120.15890 * 359.47145 * 19 18 16 30 30 H 1.07997 * 119.51150 * 179.72380 * 20 19 18 31 31 H 1.07998 * 119.51843 * 180.02562 * 21 20 19 32 32 H 1.07998 * 120.16656 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1236 -2.7200 0.0005 10 8 0.4520 -2.7955 -1.2496 11 8 0.4509 -2.7951 1.2499 12 7 2.2483 -3.9354 0.0019 13 6 3.0572 -4.1373 1.1229 14 6 3.4859 -3.0631 1.8720 15 6 4.2916 -3.2507 2.9913 16 6 4.6786 -4.5021 3.3780 17 8 5.4663 -4.6634 4.4744 18 6 4.2645 -5.6251 2.6348 19 6 4.6407 -6.9254 3.0108 20 6 4.2188 -7.9887 2.2730 21 6 3.4123 -7.8082 1.1510 22 6 3.0238 -6.5630 0.7607 23 6 3.4397 -5.4425 1.4974 24 1 -0.4850 0.8400 -0.0004 25 1 2.3456 -4.5071 -0.7756 26 1 3.1931 -2.0634 1.5870 27 1 4.6157 -2.3935 3.5628 28 1 4.9742 -4.7758 5.2991 29 1 5.2652 -7.0802 3.8782 30 1 4.5132 -8.9869 2.5617 31 1 3.0907 -8.6685 0.5828 32 1 2.3990 -6.4378 -0.1112 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192978938.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:30 Heat of formation + Delta-G solvation = -116.950079 kcal Electronic energy + Delta-G solvation = -21062.061282 eV Core-core repulsion = 17691.776095 eV Total energy + Delta-G solvation = -3370.285188 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.64230 -38.63343 -37.99184 -37.40256 -36.31296 -35.35575 -34.82920 -32.01008 -31.35318 -28.81857 -28.25349 -24.41337 -24.22192 -22.63388 -21.13661 -19.71409 -19.31664 -19.17340 -18.41219 -17.69463 -17.42547 -16.86519 -16.25921 -16.03752 -15.73535 -15.42558 -14.95701 -14.88963 -14.46844 -14.16108 -13.97183 -13.69130 -13.16584 -13.01799 -12.94302 -12.78563 -12.65093 -12.56885 -12.37505 -12.29384 -12.04759 -11.62578 -11.34140 -11.21465 -10.96469 -10.34932 -9.64071 -8.82600 -8.42360 -7.54940 -0.46424 0.00356 0.09180 1.01194 1.34771 1.35155 1.51912 2.00771 2.17834 2.53374 2.69042 3.01657 3.30065 3.55561 3.75710 3.83593 3.97844 4.10420 4.14694 4.32305 4.44788 4.49443 4.67471 4.80438 5.00668 5.08824 5.17958 5.25223 5.28188 5.33227 5.57518 5.62174 5.74697 5.84352 6.01751 6.16638 6.71312 6.88359 8.16083 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.005774 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.813904 B = 4848.547308 C = 5821.539624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.075 3.925 3 Si 0.991 3.009 4 H -0.256 1.256 5 H -0.262 1.262 6 H -0.244 1.244 7 C -1.032 5.032 8 H 0.129 0.871 9 S 2.709 3.291 10 O -1.033 7.033 11 O -1.026 7.026 12 N -1.055 6.055 13 C 0.166 3.834 14 C -0.185 4.185 15 C -0.116 4.116 16 C 0.093 3.907 17 O -0.491 6.491 18 C -0.071 4.071 19 C -0.104 4.104 20 C -0.112 4.112 21 C -0.110 4.110 22 C -0.127 4.127 23 C -0.074 4.074 24 H 0.301 0.699 25 H 0.424 0.576 26 H 0.144 0.856 27 H 0.150 0.850 28 H 0.407 0.593 29 H 0.154 0.846 30 H 0.160 0.840 31 H 0.154 0.846 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.294 -11.582 6.519 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.139 4.139 3 Si 0.809 3.191 4 H -0.180 1.180 5 H -0.186 1.186 6 H -0.167 1.167 7 C -1.166 5.166 8 H 0.147 0.853 9 S 2.811 3.189 10 O -1.023 7.023 11 O -1.016 7.016 12 N -0.801 5.801 13 C 0.069 3.931 14 C -0.207 4.207 15 C -0.135 4.135 16 C 0.048 3.952 17 O -0.304 6.304 18 C -0.072 4.072 19 C -0.122 4.122 20 C -0.129 4.129 21 C -0.128 4.128 22 C -0.145 4.145 23 C -0.077 4.077 24 H 0.112 0.888 25 H 0.261 0.739 26 H 0.162 0.838 27 H 0.168 0.832 28 H 0.266 0.734 29 H 0.172 0.828 30 H 0.178 0.822 31 H 0.172 0.828 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.521 -11.516 6.196 16.784 hybrid contribution -0.113 1.101 -0.354 1.162 sum 10.408 -10.415 5.842 15.841 Atomic orbital electron populations 1.69972 1.08801 1.32628 1.40622 1.25996 0.95348 1.05223 0.87343 0.85106 0.79280 0.74609 0.80115 1.17980 1.18640 1.16728 1.30800 1.07163 1.11452 1.67214 0.85341 1.00490 0.72446 0.74145 0.71810 1.93338 1.74211 1.88118 1.46624 1.93346 1.73783 1.87813 1.46617 1.53511 1.53042 1.51289 1.22251 1.17575 0.93223 0.93680 0.88656 1.21681 1.00577 0.99775 0.98654 1.20997 0.97238 0.98306 0.96986 1.17926 0.95139 0.91007 0.91168 1.84759 1.34142 1.94706 1.16792 1.18424 0.98058 0.95390 0.95371 1.21213 0.99834 0.90149 1.00965 1.21294 0.96789 1.00310 0.94519 1.21239 0.97221 0.96925 0.97398 1.21120 1.00646 0.92568 1.00185 1.18045 1.00510 0.92083 0.97101 0.88844 0.73923 0.83839 0.83232 0.73385 0.82836 0.82223 0.82820 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.82 13.19 21.45 0.28 -51.54 16 2 C 0.07 4.04 5.46 84.65 0.46 4.50 16 3 Si 0.99 40.05 29.54 68.60 2.03 42.07 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.24 -9.16 7.11 99.48 0.71 -8.45 16 7 C -1.03 -55.25 7.65 67.73 0.52 -54.73 16 8 H 0.13 6.19 6.79 -2.91 -0.02 6.17 16 9 S 2.71 146.16 4.65 -56.49 -0.26 145.90 16 10 O -1.03 -61.30 18.02 -128.00 -2.31 -63.61 16 11 O -1.03 -61.55 17.49 -128.00 -2.24 -63.79 16 12 N -1.05 -44.24 5.45 -50.67 -0.28 -44.51 16 13 C 0.17 6.63 6.17 38.48 0.24 6.87 16 14 C -0.18 -7.40 9.02 22.39 0.20 -7.20 16 15 C -0.12 -3.81 9.87 22.11 0.22 -3.59 16 16 C 0.09 2.70 6.67 22.53 0.15 2.85 16 17 O -0.49 -10.72 12.70 -93.09 -1.18 -11.90 16 18 C -0.07 -2.11 5.75 -21.23 -0.12 -2.23 16 19 C -0.10 -2.29 9.56 22.33 0.21 -2.08 16 20 C -0.11 -2.09 9.95 22.05 0.22 -1.87 16 21 C -0.11 -2.33 9.95 22.05 0.22 -2.11 16 22 C -0.13 -3.60 9.46 22.31 0.21 -3.39 16 23 C -0.07 -2.52 5.75 -21.21 -0.12 -2.64 16 24 H 0.30 15.72 8.31 -92.71 -0.77 14.95 16 25 H 0.42 14.95 7.77 -96.74 -0.75 14.19 16 26 H 0.14 6.29 4.38 -2.91 -0.01 6.28 16 27 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 28 H 0.41 4.92 9.06 -74.06 -0.67 4.25 16 29 H 0.15 2.57 7.60 -2.91 -0.02 2.54 16 30 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 31 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 32 H 0.13 3.42 6.90 -2.91 -0.02 3.40 16 Total: -1.00 -78.24 292.62 -1.77 -80.01 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: -0.22 Total: 32.99 kcal Atomic # 6 Polarization: -68.03 SS G_CDS: 2.41 Total: -65.62 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: 0.01 Total: -96.05 kcal Atomic # 8 Polarization: -133.57 SS G_CDS: -5.73 Total: -139.30 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.07 kcal Atomic # 16 Polarization: 146.16 SS G_CDS: -0.26 Total: 145.90 kcal Total: -78.24 -1.77 -80.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978938.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.938 kcal (2) G-P(sol) polarization free energy of solvation -78.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds