Wall clock time and date at job start Tue Mar 31 2020 06:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36811 * 119.63878 * 2 1 4 4 C 1.40489 * 117.52569 * 179.97438 * 3 2 1 5 5 C 1.41892 * 118.14724 * 0.02562 * 4 3 2 6 6 C 1.40406 * 119.23644 * 180.02562 * 5 4 3 7 7 C 1.36206 * 119.94049 * 359.97438 * 6 5 4 8 8 C 1.39142 * 121.26305 * 0.25754 * 7 6 5 9 9 C 1.38003 * 120.68018 * 359.47878 * 8 7 6 10 10 N 1.39211 * 120.40396 * 180.26090 * 9 8 7 11 11 S 1.65603 * 119.99894 * 325.30306 * 10 9 8 12 12 O 1.42100 * 106.40017 * 181.32097 * 11 10 9 13 13 O 1.42095 * 106.40228 * 314.24342 * 11 10 9 14 14 C 1.76203 * 107.21684 * 67.78288 * 11 10 9 15 15 H 1.07999 * 120.00148 * 359.97438 * 14 11 10 16 16 C 1.37873 * 119.99837 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99958 * 179.97438 * 16 14 11 18 18 Si 1.86801 * 120.00177 * 359.97438 * 16 14 11 19 19 H 1.48499 * 109.47290 * 90.00198 * 18 16 14 20 20 H 1.48508 * 109.47052 * 210.00382 * 18 16 14 21 21 H 1.48504 * 109.47010 * 329.99947 * 18 16 14 22 22 N 1.33632 * 119.01291 * 359.97438 * 5 4 3 23 23 N 1.28487 * 121.33767 * 359.97438 * 22 5 4 24 24 H 1.09002 * 109.46506 * 89.99772 * 1 2 3 25 25 H 1.08993 * 109.47527 * 210.00247 * 1 2 3 26 26 H 1.09001 * 109.46917 * 330.00448 * 1 2 3 27 27 H 1.07997 * 121.23644 * 359.97343 * 3 2 1 28 28 H 1.07997 * 120.02733 * 179.97438 * 6 5 4 29 29 H 1.07997 * 119.36508 * 179.97438 * 7 6 5 30 30 H 1.08006 * 119.66197 * 179.72234 * 8 7 6 31 31 H 0.96995 * 120.00094 * 145.30395 * 10 9 8 32 32 H 0.97001 * 120.00036 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1836 1.1891 0.0000 4 6 3.5875 1.1373 0.0006 5 6 4.2103 -0.1376 0.0005 6 6 5.6122 -0.2161 0.0016 7 6 6.3569 0.9244 0.0022 8 6 5.7558 2.1793 0.0070 9 6 4.3812 2.3017 0.0006 10 7 3.7859 3.5601 0.0000 11 16 4.4938 4.8113 0.8221 12 8 3.6398 5.9347 0.6558 13 8 4.8633 4.2974 2.0943 14 6 5.9959 5.2002 -0.0127 15 1 6.2850 4.6434 -0.8918 16 6 6.8028 6.2148 0.4568 17 7 7.9242 6.5048 -0.1660 18 14 6.3031 7.1776 1.9777 19 1 6.8556 6.5152 3.1865 20 1 6.8349 8.5611 1.8845 21 1 4.8217 7.2220 2.0708 22 7 3.4447 -1.2329 0.0005 23 7 2.1624 -1.1519 0.0010 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6580 2.1325 -0.0004 28 1 6.0995 -1.1798 0.0020 29 1 7.4345 0.8532 0.0034 30 1 6.3713 3.0668 0.0119 31 1 2.9565 3.7040 -0.4818 32 1 8.4917 7.2189 0.1641 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192978966.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:43 Heat of formation + Delta-G solvation = -1.189485 kcal Electronic energy + Delta-G solvation = -21044.970549 eV Core-core repulsion = 17711.997868 eV Total energy + Delta-G solvation = -3332.972681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.31693 -38.23271 -35.96397 -35.37943 -34.78048 -33.48911 -33.27721 -31.88462 -29.48603 -27.36844 -26.67862 -25.23184 -23.35609 -21.85553 -19.75857 -18.60825 -17.96760 -17.47467 -17.28926 -16.48484 -15.68900 -15.29072 -15.21048 -14.69692 -14.23566 -13.99995 -13.73303 -13.58541 -13.32843 -13.10600 -12.55466 -12.46234 -12.32623 -12.01536 -11.59059 -11.49448 -11.09251 -10.96132 -10.90350 -10.79352 -10.71982 -10.12711 -10.09346 -9.66424 -9.39402 -9.24647 -9.09816 -7.67222 -7.01941 -5.61337 0.08779 0.73785 1.56834 1.90070 2.92114 2.93277 3.03142 3.10893 3.75769 3.80327 3.98853 4.01291 4.36518 4.45507 4.48643 4.55935 4.87090 4.93727 5.04906 5.24220 5.28125 5.41224 5.44817 5.59712 5.74028 5.79830 5.87062 6.04356 6.15349 6.29815 6.39680 6.57232 6.85654 7.23273 7.27784 7.92170 8.45057 8.69883 10.08526 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.025761 B = 0.005527 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.656347 B = 5064.485478 C = 5819.023826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.028 3.972 3 C -0.087 4.087 4 C -0.078 4.078 5 C 0.078 3.922 6 C -0.117 4.117 7 C -0.052 4.052 8 C -0.154 4.154 9 C 0.201 3.799 10 N -1.054 6.054 11 S 2.659 3.341 12 O -0.994 6.994 13 O -0.990 6.990 14 C -1.020 5.020 15 H 0.132 0.868 16 C 0.157 3.843 17 N -0.811 5.811 18 Si 0.800 3.200 19 H -0.243 1.243 20 H -0.252 1.252 21 H -0.222 1.222 22 N -0.205 5.205 23 N -0.224 5.224 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.148 0.852 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.176 0.824 31 H 0.416 0.584 32 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.149 -8.802 -1.244 11.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.117 4.117 4 C -0.089 4.089 5 C -0.050 4.050 6 C -0.140 4.140 7 C -0.074 4.074 8 C -0.178 4.178 9 C 0.101 3.899 10 N -0.795 5.795 11 S 2.762 3.238 12 O -0.984 6.984 13 O -0.980 6.980 14 C -1.154 5.154 15 H 0.150 0.850 16 C -0.065 4.065 17 N -0.438 5.438 18 Si 0.619 3.381 19 H -0.167 1.167 20 H -0.175 1.175 21 H -0.144 1.144 22 N -0.059 5.059 23 N -0.079 5.079 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.166 0.834 28 H 0.159 0.841 29 H 0.160 0.840 30 H 0.193 0.807 31 H 0.251 0.749 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.383 -9.805 -0.400 12.280 hybrid contribution 0.149 2.203 -0.148 2.213 sum -7.234 -7.602 -0.548 10.508 Atomic orbital electron populations 1.20627 0.87649 1.03825 1.03310 1.22175 0.98836 0.90042 0.99373 1.21932 0.93230 1.00030 0.96517 1.18709 0.94036 0.93965 1.02226 1.20139 0.96180 0.89361 0.99356 1.20608 0.90186 0.99853 1.03316 1.20853 1.00930 0.90844 0.94724 1.22235 0.93286 1.01589 1.00645 1.17091 0.91645 0.83708 0.97485 1.53732 1.37196 1.21188 1.67390 1.02154 0.76479 0.71149 0.74024 1.93512 1.69855 1.48228 1.86839 1.93472 1.84427 1.79320 1.40797 1.30347 1.25602 1.30503 1.28931 0.85030 1.24373 0.93038 0.93601 0.95465 1.69957 1.09837 1.26964 1.37085 0.87878 0.84084 0.82298 0.83805 1.16666 1.17533 1.14414 1.73796 0.98534 1.25304 1.08302 1.72803 1.02296 1.24813 1.07994 0.90221 0.90141 0.90482 0.83443 0.84074 0.84000 0.80705 0.74930 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.17 36.01 0.37 -0.51 16 2 C 0.03 0.37 6.82 -82.81 -0.56 -0.19 16 3 C -0.09 -1.22 9.23 -39.25 -0.36 -1.58 16 4 C -0.08 -1.28 5.76 -106.64 -0.61 -1.89 16 5 C 0.08 1.27 6.68 -84.87 -0.57 0.70 16 6 C -0.12 -1.66 9.99 -39.50 -0.39 -2.05 16 7 C -0.05 -0.75 9.93 -39.98 -0.40 -1.15 16 8 C -0.15 -2.73 9.01 -39.33 -0.35 -3.08 16 9 C 0.20 3.57 6.17 -83.58 -0.52 3.05 16 10 N -1.05 -19.01 5.48 32.54 0.18 -18.83 16 11 S 2.66 61.40 3.87 -107.50 -0.42 60.98 16 12 O -0.99 -24.66 16.02 -57.17 -0.92 -25.58 16 13 O -0.99 -24.77 16.30 -57.17 -0.93 -25.70 16 14 C -1.02 -25.56 8.18 30.60 0.25 -25.31 16 15 H 0.13 3.25 7.05 -52.49 -0.37 2.88 16 16 C 0.16 4.12 5.47 -17.82 -0.10 4.02 16 17 N -0.81 -21.42 13.96 55.43 0.77 -20.65 16 18 Si 0.80 19.14 26.54 -169.99 -4.51 14.63 16 19 H -0.24 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.25 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.22 -5.44 5.61 56.52 0.32 -5.13 16 22 N -0.21 -3.40 11.56 32.20 0.37 -3.03 16 23 N -0.22 -3.53 11.39 33.35 0.38 -3.15 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 27 H 0.15 1.66 7.10 -52.49 -0.37 1.29 16 28 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 30 H 0.18 3.42 4.41 -52.48 -0.23 3.18 16 31 H 0.42 6.05 7.88 -34.47 -0.27 5.78 16 32 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 287.56 15.07 4.33 4.33 Total: -1.00 -31.38 287.56 -6.56 -37.94 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -2.58 Total: 7.06 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -3.25 Total: -28.00 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 1.70 Total: -45.66 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -1.85 Total: -51.28 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.51 Total: 14.63 kcal Atomic # 16 Polarization: 61.40 SS G_CDS: -0.42 Total: 60.98 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.38 -6.56 -37.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978966.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.753 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds