Wall clock time and date at job start Tue Mar 31 2020 06:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36811 * 119.63878 * 2 1 4 4 C 1.40489 * 117.52569 * 179.97438 * 3 2 1 5 5 C 1.41892 * 118.14724 * 0.02562 * 4 3 2 6 6 C 1.40406 * 119.23644 * 180.02562 * 5 4 3 7 7 C 1.36206 * 119.94049 * 359.97438 * 6 5 4 8 8 C 1.39142 * 121.26305 * 0.25754 * 7 6 5 9 9 C 1.38003 * 120.68018 * 359.47878 * 8 7 6 10 10 N 1.39211 * 120.40396 * 180.26090 * 9 8 7 11 11 S 1.65603 * 119.99894 * 325.30306 * 10 9 8 12 12 O 1.42100 * 106.40017 * 181.32097 * 11 10 9 13 13 O 1.42095 * 106.40228 * 314.24342 * 11 10 9 14 14 C 1.76203 * 107.21684 * 67.78288 * 11 10 9 15 15 H 1.07999 * 120.00148 * 359.97438 * 14 11 10 16 16 C 1.37873 * 119.99837 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99958 * 179.97438 * 16 14 11 18 18 Si 1.86801 * 120.00177 * 359.97438 * 16 14 11 19 19 H 1.48499 * 109.47290 * 90.00198 * 18 16 14 20 20 H 1.48508 * 109.47052 * 210.00382 * 18 16 14 21 21 H 1.48504 * 109.47010 * 329.99947 * 18 16 14 22 22 N 1.33632 * 119.01291 * 359.97438 * 5 4 3 23 23 N 1.28487 * 121.33767 * 359.97438 * 22 5 4 24 24 H 1.09002 * 109.46506 * 89.99772 * 1 2 3 25 25 H 1.08993 * 109.47527 * 210.00247 * 1 2 3 26 26 H 1.09001 * 109.46917 * 330.00448 * 1 2 3 27 27 H 1.07997 * 121.23644 * 359.97343 * 3 2 1 28 28 H 1.07997 * 120.02733 * 179.97438 * 6 5 4 29 29 H 1.07997 * 119.36508 * 179.97438 * 7 6 5 30 30 H 1.08006 * 119.66197 * 179.72234 * 8 7 6 31 31 H 0.96995 * 120.00094 * 145.30395 * 10 9 8 32 32 H 0.97001 * 120.00036 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1836 1.1891 0.0000 4 6 3.5875 1.1373 0.0006 5 6 4.2103 -0.1376 0.0005 6 6 5.6122 -0.2161 0.0016 7 6 6.3569 0.9244 0.0022 8 6 5.7558 2.1793 0.0070 9 6 4.3812 2.3017 0.0006 10 7 3.7859 3.5601 0.0000 11 16 4.4938 4.8113 0.8221 12 8 3.6398 5.9347 0.6558 13 8 4.8633 4.2974 2.0943 14 6 5.9959 5.2002 -0.0127 15 1 6.2850 4.6434 -0.8918 16 6 6.8028 6.2148 0.4568 17 7 7.9242 6.5048 -0.1660 18 14 6.3031 7.1776 1.9777 19 1 6.8556 6.5152 3.1865 20 1 6.8349 8.5611 1.8845 21 1 4.8217 7.2220 2.0708 22 7 3.4447 -1.2329 0.0005 23 7 2.1624 -1.1519 0.0010 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6580 2.1325 -0.0004 28 1 6.0995 -1.1798 0.0020 29 1 7.4345 0.8532 0.0034 30 1 6.3713 3.0668 0.0119 31 1 2.9565 3.7040 -0.4818 32 1 8.4917 7.2189 0.1641 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192978966.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:43 Heat of formation + Delta-G solvation = -25.097465 kcal Electronic energy + Delta-G solvation = -21046.007277 eV Core-core repulsion = 17711.997868 eV Total energy + Delta-G solvation = -3334.009408 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.49187 -39.48942 -37.85601 -36.71529 -36.62760 -35.27296 -34.61211 -33.05728 -30.69549 -28.79189 -28.21099 -26.43178 -24.52158 -23.11309 -21.38223 -20.10998 -19.58817 -19.06696 -18.52537 -18.08670 -17.10662 -16.92173 -16.37908 -16.09226 -15.80116 -15.55236 -15.16644 -14.96614 -14.68254 -14.34452 -13.96904 -13.67074 -13.50116 -13.24830 -13.15144 -13.04778 -12.91486 -12.82767 -12.62236 -12.16451 -11.93151 -11.89765 -11.40980 -11.35321 -11.08683 -10.83356 -10.31352 -8.99863 -8.93244 -7.58655 -1.10612 -0.43522 -0.19891 0.67711 1.04944 1.13334 1.19337 1.74824 1.86309 2.17115 2.38781 2.78740 2.92417 3.11348 3.31450 3.34241 3.49060 3.67702 3.82091 4.04383 4.06561 4.31528 4.32985 4.56315 4.77150 4.77800 4.86300 4.93732 5.01135 5.16917 5.31016 5.32364 5.35205 5.65601 5.93746 5.96915 6.47599 7.52832 8.15693 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.025761 B = 0.005527 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.656347 B = 5064.485478 C = 5819.023826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.031 3.969 3 C -0.090 4.090 4 C -0.090 4.090 5 C 0.061 3.939 6 C -0.104 4.104 7 C -0.055 4.055 8 C -0.171 4.171 9 C 0.179 3.821 10 N -1.041 6.041 11 S 2.684 3.316 12 O -1.013 7.013 13 O -1.012 7.012 14 C -1.031 5.031 15 H 0.125 0.875 16 C 0.120 3.880 17 N -0.838 5.838 18 Si 0.815 3.185 19 H -0.239 1.239 20 H -0.220 1.220 21 H -0.232 1.232 22 N -0.221 5.221 23 N -0.241 5.241 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.174 0.826 28 H 0.171 0.829 29 H 0.172 0.828 30 H 0.153 0.847 31 H 0.432 0.568 32 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.315 -9.592 -1.115 12.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.101 4.101 3 C -0.120 4.120 4 C -0.102 4.102 5 C -0.068 4.068 6 C -0.126 4.126 7 C -0.076 4.076 8 C -0.195 4.195 9 C 0.080 3.920 10 N -0.788 5.788 11 S 2.786 3.214 12 O -1.003 7.003 13 O -1.002 7.002 14 C -1.165 5.165 15 H 0.143 0.857 16 C -0.099 4.099 17 N -0.467 5.467 18 Si 0.633 3.367 19 H -0.162 1.162 20 H -0.142 1.142 21 H -0.155 1.155 22 N -0.075 5.075 23 N -0.095 5.095 24 H 0.117 0.883 25 H 0.104 0.896 26 H 0.117 0.883 27 H 0.192 0.808 28 H 0.188 0.812 29 H 0.190 0.810 30 H 0.171 0.829 31 H 0.270 0.730 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.536 -10.593 -0.282 13.607 hybrid contribution 0.431 2.301 -0.248 2.354 sum -8.105 -8.292 -0.530 11.607 Atomic orbital electron populations 1.20805 0.84391 1.05205 1.04903 1.22804 1.00840 0.89046 0.97408 1.22312 0.92449 1.01551 0.95718 1.18826 0.95191 0.93452 1.02712 1.20459 0.97159 0.89333 0.99818 1.20957 0.89502 1.00962 1.01160 1.21105 1.02473 0.89599 0.94420 1.22273 0.93406 1.02242 1.01587 1.17182 0.91908 0.83625 0.99278 1.53081 1.37650 1.20521 1.67542 1.01200 0.75526 0.71223 0.73495 1.93480 1.69834 1.49870 1.87138 1.93437 1.84800 1.79849 1.42096 1.30724 1.26847 1.30081 1.28802 0.85694 1.24964 0.93340 0.94490 0.97140 1.69971 1.10521 1.27995 1.38236 0.87629 0.83434 0.83506 0.82177 1.16210 1.14228 1.15468 1.73770 0.99117 1.25522 1.09054 1.72751 1.02170 1.26187 1.08386 0.88344 0.89563 0.88331 0.80835 0.81152 0.81047 0.82941 0.73028 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.17 71.24 0.72 -0.70 16 2 C 0.03 0.78 6.82 42.12 0.29 1.06 16 3 C -0.09 -2.34 9.23 22.48 0.21 -2.14 16 4 C -0.09 -2.87 5.76 -21.17 -0.12 -2.99 16 5 C 0.06 1.92 6.68 40.30 0.27 2.19 16 6 C -0.10 -2.76 9.99 22.32 0.22 -2.54 16 7 C -0.06 -1.53 9.93 22.01 0.22 -1.31 16 8 C -0.17 -6.07 9.01 22.43 0.20 -5.87 16 9 C 0.18 6.28 6.17 38.57 0.24 6.52 16 10 N -1.04 -36.98 5.48 -50.96 -0.28 -37.25 16 11 S 2.68 123.62 3.87 -56.49 -0.22 123.40 16 12 O -1.01 -49.83 16.02 -128.00 -2.05 -51.88 16 13 O -1.01 -50.59 16.30 -128.00 -2.09 -52.68 16 14 C -1.03 -52.37 8.18 67.73 0.55 -51.82 16 15 H 0.13 6.34 7.05 -2.91 -0.02 6.32 16 16 C 0.12 6.31 5.47 84.65 0.46 6.77 16 17 N -0.84 -44.52 13.96 21.45 0.30 -44.22 16 18 Si 0.82 38.15 26.54 68.60 1.82 39.97 16 19 H -0.24 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.22 -9.13 7.11 99.48 0.71 -8.42 16 21 H -0.23 -11.22 5.61 99.48 0.56 -10.66 16 22 N -0.22 -7.03 11.56 -52.03 -0.60 -7.63 16 23 N -0.24 -7.18 11.39 -48.39 -0.55 -7.73 16 24 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.10 1.08 8.07 -2.39 -0.02 1.07 16 27 H 0.17 3.43 7.10 -2.91 -0.02 3.41 16 28 H 0.17 3.43 8.06 -2.91 -0.02 3.40 16 29 H 0.17 3.58 8.06 -2.91 -0.02 3.56 16 30 H 0.15 6.12 4.41 -2.91 -0.01 6.11 16 31 H 0.43 12.05 7.88 -96.75 -0.76 11.29 16 32 H 0.29 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -67.19 287.56 -0.12 -67.31 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.28 Total: 21.53 kcal Atomic # 6 Polarization: -54.09 SS G_CDS: 3.27 Total: -50.82 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -1.13 Total: -96.84 kcal Atomic # 8 Polarization: -100.42 SS G_CDS: -4.14 Total: -104.56 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 1.82 Total: 39.97 kcal Atomic # 16 Polarization: 123.62 SS G_CDS: -0.22 Total: 123.40 kcal Total: -67.19 -0.12 -67.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978966.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.217 kcal (2) G-P(sol) polarization free energy of solvation -67.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds