Wall clock time and date at job start Tue Mar 31 2020 06:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 N 1.65600 * 107.21522 * 179.72073 * 9 7 2 13 13 C 1.39617 * 120.00274 * 64.99957 * 12 9 7 14 14 C 1.40035 * 119.66661 * 44.99802 * 13 12 9 15 15 C 1.35918 * 120.92488 * 179.97438 * 14 13 12 16 16 C 1.40591 * 119.92123 * 0.02562 * 15 14 13 17 17 C 1.40582 * 121.07021 * 180.02562 * 16 15 14 18 18 C 1.35994 * 119.77306 * 179.97438 * 17 16 15 19 19 C 1.39844 * 120.94418 * 0.02562 * 18 17 16 20 20 O 1.35885 * 119.58000 * 179.97438 * 19 18 17 21 21 C 1.36574 * 120.84081 * 359.97438 * 19 18 17 22 22 C 1.40506 * 119.62741 * 0.04117 * 21 19 18 23 23 C 1.37739 * 119.66773 * 224.73040 * 13 12 9 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 0.96998 * 119.99801 * 244.99599 * 12 9 7 26 26 H 1.08007 * 119.54139 * 359.97438 * 14 13 12 27 27 H 1.07995 * 120.03570 * 179.97438 * 15 14 13 28 28 H 1.08008 * 120.11365 * 359.96092 * 17 16 15 29 29 H 1.08003 * 119.52635 * 180.02562 * 18 17 16 30 30 H 0.96701 * 113.99665 * 90.00125 * 20 19 18 31 31 H 1.07998 * 120.18142 * 180.02562 * 21 19 18 32 32 H 1.07996 * 120.24942 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4512 -2.8009 1.2430 11 8 0.4514 -2.7897 -1.2564 12 7 2.2481 -3.9354 -0.0117 13 6 3.0973 -4.1057 1.0834 14 6 2.5738 -4.0528 2.3812 15 6 3.3770 -4.2156 3.4655 16 6 4.7538 -4.4402 3.2910 17 6 5.6065 -4.6124 4.3953 18 6 6.9343 -4.8287 4.1960 19 6 7.4682 -4.8824 2.9046 20 8 8.7991 -5.0996 2.7375 21 6 6.6690 -4.7194 1.8092 22 6 5.2928 -4.4939 1.9808 23 6 4.4405 -4.3295 0.8763 24 1 -0.4850 0.8401 -0.0004 25 1 2.3170 -4.5291 -0.7757 26 1 1.5170 -3.8802 2.5225 27 1 2.9581 -4.1717 4.4599 28 1 5.2086 -4.5728 5.3986 29 1 7.5857 -4.9608 5.0472 30 1 9.0392 -6.0335 2.6654 31 1 7.0925 -4.7633 0.8167 32 1 4.8362 -4.3737 -0.1276 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192979030.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:54 Heat of formation + Delta-G solvation = -91.460404 kcal Electronic energy + Delta-G solvation = -20616.700407 eV Core-core repulsion = 17247.520535 eV Total energy + Delta-G solvation = -3369.179872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.34362 -38.27650 -36.13070 -35.34218 -34.17317 -33.30194 -33.04567 -32.30082 -28.68226 -28.12196 -26.21280 -23.15592 -22.57019 -21.88003 -19.31931 -18.76602 -17.63179 -17.41964 -16.95688 -16.33303 -15.71183 -15.25365 -14.97646 -14.50404 -14.23916 -13.91360 -13.62126 -13.40307 -13.29874 -13.13913 -12.50470 -12.10450 -11.80915 -11.41447 -11.37564 -11.25100 -11.11019 -10.64379 -10.59083 -10.48785 -10.44670 -10.13170 -9.83983 -9.63171 -9.30867 -8.92334 -7.99406 -7.53008 -6.78083 -5.40988 0.65431 1.11175 2.05015 2.23706 3.03749 3.04783 3.11140 3.18963 3.99626 4.09192 4.29647 4.45965 4.57817 4.73730 4.98520 5.17160 5.26735 5.36385 5.44101 5.55545 5.71839 5.76443 5.92312 6.05420 6.22336 6.32334 6.41451 6.45336 6.49716 6.75638 6.83518 6.96816 7.15287 7.26064 7.59062 7.71206 7.89653 8.81444 10.16024 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.019827 B = 0.004901 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.879633 B = 5711.649666 C = 6250.978658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.135 3.865 3 Si 0.921 3.079 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.261 1.261 7 C -1.014 5.014 8 H 0.104 0.896 9 S 2.705 3.295 10 O -0.995 6.995 11 O -0.996 6.996 12 N -1.076 6.076 13 C 0.197 3.803 14 C -0.136 4.136 15 C -0.087 4.087 16 C -0.078 4.078 17 C -0.079 4.079 18 C -0.156 4.156 19 C 0.102 3.898 20 O -0.502 6.502 21 C -0.137 4.137 22 C -0.016 4.016 23 C -0.151 4.151 24 H 0.292 0.708 25 H 0.413 0.587 26 H 0.166 0.834 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.386 0.614 31 H 0.130 0.870 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.876 -9.928 6.114 16.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.084 4.084 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.185 1.185 7 C -1.148 5.148 8 H 0.123 0.877 9 S 2.806 3.194 10 O -0.985 6.985 11 O -0.986 6.986 12 N -0.819 5.819 13 C 0.099 3.901 14 C -0.156 4.156 15 C -0.106 4.106 16 C -0.078 4.078 17 C -0.097 4.097 18 C -0.175 4.175 19 C 0.058 3.942 20 O -0.312 6.312 21 C -0.155 4.155 22 C -0.017 4.017 23 C -0.174 4.174 24 H 0.103 0.897 25 H 0.247 0.753 26 H 0.184 0.816 27 H 0.150 0.850 28 H 0.147 0.853 29 H 0.142 0.858 30 H 0.241 0.759 31 H 0.148 0.852 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.681 -9.255 6.220 15.441 hybrid contribution 1.098 0.516 -0.496 1.310 sum 11.779 -8.739 5.724 15.744 Atomic orbital electron populations 1.69883 1.06748 1.30936 1.39809 1.24731 0.94495 1.00834 0.88321 0.86137 0.80287 0.79787 0.79298 1.19089 1.19832 1.18498 1.30405 1.06169 1.11070 1.67181 0.87738 1.00917 0.72053 0.73282 0.73126 1.93296 1.72633 1.87189 1.45332 1.93397 1.72491 1.87355 1.45381 1.54112 1.53789 1.49455 1.24536 1.17434 0.89320 0.96218 0.87094 1.21886 1.03625 0.99243 0.90857 1.20881 0.91705 0.98908 0.99059 1.18141 0.94226 1.02827 0.92647 1.20904 0.92804 0.97803 0.98149 1.20981 0.95703 1.04320 0.96502 1.18081 0.82747 1.01194 0.92176 1.84837 1.20422 1.30672 1.95282 1.21191 0.92399 1.03067 0.98880 1.17651 0.92695 0.98840 0.92542 1.21119 0.91664 1.06298 0.98348 0.89731 0.75296 0.81646 0.85039 0.85272 0.85822 0.75883 0.85217 0.85159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.27 13.19 55.43 0.73 -23.53 16 2 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 3 Si 0.92 20.56 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 5 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 7 C -1.01 -27.55 9.68 30.60 0.30 -27.25 16 8 H 0.10 2.66 7.81 -52.49 -0.41 2.25 16 9 S 2.70 69.22 4.95 -107.50 -0.53 68.69 16 10 O -0.99 -27.09 14.89 -57.17 -0.85 -27.94 16 11 O -1.00 -28.18 18.02 -57.17 -1.03 -29.21 16 12 N -1.08 -21.03 5.74 32.40 0.19 -20.84 16 13 C 0.20 3.66 6.20 -83.82 -0.52 3.14 16 14 C -0.14 -2.52 9.08 -39.74 -0.36 -2.88 16 15 C -0.09 -1.34 9.74 -39.53 -0.39 -1.73 16 16 C -0.08 -1.15 5.74 -106.78 -0.61 -1.77 16 17 C -0.08 -0.96 9.75 -39.50 -0.39 -1.34 16 18 C -0.16 -1.81 9.88 -39.79 -0.39 -2.21 16 19 C 0.10 1.26 6.65 -39.58 -0.26 1.00 16 20 O -0.50 -5.31 13.47 -19.38 -0.26 -5.58 16 21 C -0.14 -1.82 9.68 -39.33 -0.38 -2.20 16 22 C -0.02 -0.25 5.74 -106.85 -0.61 -0.86 16 23 C -0.15 -2.45 9.71 -38.92 -0.38 -2.82 16 24 H 0.29 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.41 6.69 8.95 -34.47 -0.31 6.38 16 26 H 0.17 3.35 5.51 -52.48 -0.29 3.07 16 27 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 29 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 30 H 0.39 2.09 9.06 45.56 0.41 2.50 16 31 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 298.37 15.07 4.50 4.50 Total: -1.00 -34.92 298.37 -8.22 -43.14 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -1.84 Total: 10.58 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: -4.09 Total: -35.32 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.92 Total: -44.38 kcal Atomic # 8 Polarization: -60.59 SS G_CDS: -2.14 Total: -62.73 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 69.22 SS G_CDS: -0.53 Total: 68.69 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.92 -8.22 -43.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192979030.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.325 kcal (2) G-P(sol) polarization free energy of solvation -34.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds