Wall clock time and date at job start Tue Mar 31 2020 06:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 N 1.65600 * 107.21522 * 179.72073 * 9 7 2 13 13 C 1.39617 * 120.00274 * 64.99957 * 12 9 7 14 14 C 1.40035 * 119.66661 * 44.99802 * 13 12 9 15 15 C 1.35918 * 120.92488 * 179.97438 * 14 13 12 16 16 C 1.40591 * 119.92123 * 0.02562 * 15 14 13 17 17 C 1.40582 * 121.07021 * 180.02562 * 16 15 14 18 18 C 1.35994 * 119.77306 * 179.97438 * 17 16 15 19 19 C 1.39844 * 120.94418 * 0.02562 * 18 17 16 20 20 O 1.35885 * 119.58000 * 179.97438 * 19 18 17 21 21 C 1.36574 * 120.84081 * 359.97438 * 19 18 17 22 22 C 1.40506 * 119.62741 * 0.04117 * 21 19 18 23 23 C 1.37739 * 119.66773 * 224.73040 * 13 12 9 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 0.96998 * 119.99801 * 244.99599 * 12 9 7 26 26 H 1.08007 * 119.54139 * 359.97438 * 14 13 12 27 27 H 1.07995 * 120.03570 * 179.97438 * 15 14 13 28 28 H 1.08008 * 120.11365 * 359.96092 * 17 16 15 29 29 H 1.08003 * 119.52635 * 180.02562 * 18 17 16 30 30 H 0.96701 * 113.99665 * 90.00125 * 20 19 18 31 31 H 1.07998 * 120.18142 * 180.02562 * 21 19 18 32 32 H 1.07996 * 120.24942 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4512 -2.8009 1.2430 11 8 0.4514 -2.7897 -1.2564 12 7 2.2481 -3.9354 -0.0117 13 6 3.0973 -4.1057 1.0834 14 6 2.5738 -4.0528 2.3812 15 6 3.3770 -4.2156 3.4655 16 6 4.7538 -4.4402 3.2910 17 6 5.6065 -4.6124 4.3953 18 6 6.9343 -4.8287 4.1960 19 6 7.4682 -4.8824 2.9046 20 8 8.7991 -5.0996 2.7375 21 6 6.6690 -4.7194 1.8092 22 6 5.2928 -4.4939 1.9808 23 6 4.4405 -4.3295 0.8763 24 1 -0.4850 0.8401 -0.0004 25 1 2.3170 -4.5291 -0.7757 26 1 1.5170 -3.8802 2.5225 27 1 2.9581 -4.1717 4.4599 28 1 5.2086 -4.5728 5.3986 29 1 7.5857 -4.9608 5.0472 30 1 9.0392 -6.0335 2.6654 31 1 7.0925 -4.7633 0.8167 32 1 4.8362 -4.3737 -0.1276 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192979030.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:53 Heat of formation + Delta-G solvation = -119.075626 kcal Electronic energy + Delta-G solvation = -20617.897893 eV Core-core repulsion = 17247.520535 eV Total energy + Delta-G solvation = -3370.377358 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.43308 -39.33400 -37.61529 -37.09784 -36.27388 -35.24932 -34.41120 -33.41495 -29.78884 -29.33098 -28.31106 -24.27210 -23.75103 -22.97886 -21.17805 -20.06701 -19.20250 -18.82910 -18.32676 -17.96942 -17.05477 -16.78669 -16.28471 -15.98920 -15.69987 -15.55214 -15.03692 -14.60149 -14.47140 -14.22185 -14.04351 -13.57656 -13.41125 -13.08714 -13.05174 -12.83741 -12.63252 -12.45650 -12.34569 -12.30433 -11.66476 -11.42227 -11.28843 -11.24052 -10.96761 -10.72203 -9.19780 -8.83626 -8.66335 -7.53862 -0.44845 -0.08305 0.24188 1.09599 1.31109 1.31552 1.47924 1.93572 2.16763 2.53319 2.73690 3.09040 3.32116 3.55593 3.73787 4.00467 4.06543 4.08480 4.31313 4.32412 4.38973 4.55028 4.59821 4.88901 4.97973 5.16235 5.21830 5.22521 5.29602 5.44363 5.54392 5.65118 5.82082 5.85022 5.94187 6.28647 6.73258 6.91080 8.15907 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.019827 B = 0.004901 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.879633 B = 5711.649666 C = 6250.978658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.076 3.924 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.258 1.258 6 H -0.253 1.253 7 C -1.036 5.036 8 H 0.114 0.886 9 S 2.716 3.284 10 O -1.021 7.021 11 O -1.034 7.034 12 N -1.062 6.062 13 C 0.162 3.838 14 C -0.173 4.173 15 C -0.076 4.076 16 C -0.091 4.091 17 C -0.077 4.077 18 C -0.150 4.150 19 C 0.114 3.886 20 O -0.508 6.508 21 C -0.151 4.151 22 C -0.031 4.031 23 C -0.143 4.143 24 H 0.301 0.699 25 H 0.426 0.574 26 H 0.138 0.862 27 H 0.158 0.842 28 H 0.160 0.840 29 H 0.153 0.847 30 H 0.411 0.589 31 H 0.143 0.857 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.351 -9.896 7.586 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.138 4.138 3 Si 0.804 3.196 4 H -0.176 1.176 5 H -0.182 1.182 6 H -0.177 1.177 7 C -1.170 5.170 8 H 0.132 0.868 9 S 2.818 3.182 10 O -1.011 7.011 11 O -1.024 7.024 12 N -0.811 5.811 13 C 0.065 3.935 14 C -0.193 4.193 15 C -0.094 4.094 16 C -0.092 4.092 17 C -0.095 4.095 18 C -0.168 4.168 19 C 0.070 3.930 20 O -0.322 6.322 21 C -0.170 4.170 22 C -0.032 4.032 23 C -0.165 4.165 24 H 0.111 0.889 25 H 0.263 0.737 26 H 0.156 0.844 27 H 0.176 0.824 28 H 0.177 0.823 29 H 0.171 0.829 30 H 0.271 0.729 31 H 0.161 0.839 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 14.162 -9.267 7.685 18.588 hybrid contribution 0.270 0.330 -0.827 0.931 sum 14.432 -8.937 6.858 18.308 Atomic orbital electron populations 1.69961 1.08520 1.32487 1.41011 1.25921 0.95389 1.05032 0.87462 0.85183 0.79102 0.75079 0.80213 1.17647 1.18208 1.17669 1.30764 1.06861 1.12240 1.67103 0.86798 1.00239 0.72356 0.73657 0.71912 1.93267 1.74026 1.87758 1.46049 1.93334 1.74188 1.88140 1.46729 1.53337 1.53444 1.48513 1.25802 1.17599 0.90102 0.99323 0.86470 1.21758 1.02843 1.02561 0.92181 1.21160 0.92032 0.96933 0.99301 1.18410 0.94192 1.02971 0.93605 1.21212 0.92790 0.96871 0.98637 1.21349 0.95815 1.02489 0.97177 1.18225 0.83273 0.99307 0.92205 1.84773 1.19112 1.33117 1.95196 1.21323 0.91617 1.03848 1.00210 1.17878 0.93622 0.99175 0.92501 1.21321 0.90637 1.04790 0.99796 0.88887 0.73712 0.84438 0.82434 0.82287 0.82900 0.72905 0.83922 0.83405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.42 13.19 21.45 0.28 -52.14 16 2 C 0.08 4.20 5.46 84.66 0.46 4.67 16 3 Si 0.99 41.65 29.54 68.60 2.03 43.68 16 4 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 7 C -1.04 -57.54 9.68 67.74 0.66 -56.88 16 8 H 0.11 5.88 7.81 -2.91 -0.02 5.86 16 9 S 2.72 145.28 4.95 -56.49 -0.28 145.00 16 10 O -1.02 -58.75 14.89 -128.00 -1.91 -60.66 16 11 O -1.03 -61.16 18.02 -128.00 -2.31 -63.46 16 12 N -1.06 -43.25 5.74 -51.42 -0.30 -43.54 16 13 C 0.16 6.14 6.20 38.22 0.24 6.38 16 14 C -0.17 -6.64 9.08 22.17 0.20 -6.44 16 15 C -0.08 -2.31 9.74 22.31 0.22 -2.09 16 16 C -0.09 -2.53 5.74 -21.26 -0.12 -2.65 16 17 C -0.08 -1.59 9.75 22.32 0.22 -1.37 16 18 C -0.15 -2.79 9.88 22.14 0.22 -2.58 16 19 C 0.11 2.37 6.65 22.27 0.15 2.52 16 20 O -0.51 -8.56 13.47 -92.26 -1.24 -9.80 16 21 C -0.15 -3.61 9.68 22.43 0.22 -3.39 16 22 C -0.03 -0.89 5.74 -21.31 -0.12 -1.01 16 23 C -0.14 -4.54 9.71 22.70 0.22 -4.32 16 24 H 0.30 15.88 8.31 -92.70 -0.77 15.11 16 25 H 0.43 14.38 8.95 -96.75 -0.87 13.52 16 26 H 0.14 5.99 5.51 -2.91 -0.02 5.98 16 27 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 28 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 29 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 30 H 0.41 2.60 9.06 -74.06 -0.67 1.93 16 31 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 32 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -77.72 298.37 -1.51 -79.23 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: -0.34 Total: 28.85 kcal Atomic # 6 Polarization: -69.72 SS G_CDS: 2.55 Total: -67.17 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -0.01 Total: -95.68 kcal Atomic # 8 Polarization: -128.47 SS G_CDS: -5.45 Total: -133.92 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: 145.28 SS G_CDS: -0.28 Total: 145.00 kcal Total: -77.72 -1.51 -79.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192979030.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.842 kcal (2) G-P(sol) polarization free energy of solvation -77.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds