Wall clock time and date at job start Tue Mar 31 2020 06:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00206 * 2 1 4 4 H 1.48502 * 109.47286 * 270.00078 * 3 2 1 5 5 H 1.48501 * 109.47128 * 30.00023 * 3 2 1 6 6 H 1.48498 * 109.47329 * 149.99902 * 3 2 1 7 7 C 1.37883 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00369 * 359.97438 * 7 2 1 9 9 S 1.76207 * 119.99530 * 179.97438 * 7 2 1 10 10 O 1.42094 * 106.40150 * 66.46019 * 9 7 2 11 11 O 1.42101 * 106.40183 * 293.53922 * 9 7 2 12 12 N 1.65601 * 107.21290 * 180.02562 * 9 7 2 13 13 C 1.39493 * 120.00597 * 67.79911 * 12 9 7 14 14 C 1.38698 * 120.14694 * 325.27499 * 13 12 9 15 15 C 1.38195 * 120.07056 * 179.71648 * 14 13 12 16 16 C 1.38438 * 120.36637 * 0.55748 * 15 14 13 17 17 C 1.37976 * 120.29725 * 359.71921 * 16 15 14 18 18 C 1.39515 * 119.92552 * 359.97438 * 17 16 15 19 19 C 1.47717 * 120.18155 * 179.97438 * 18 17 16 20 20 C 1.35986 * 125.93349 * 309.74657 * 19 18 17 21 21 C 1.40968 * 106.73708 * 179.85019 * 20 19 18 22 22 C 1.34704 * 107.03354 * 0.40599 * 21 20 19 23 23 O 1.34358 * 108.67813 * 359.74543 * 22 21 20 24 24 H 0.96998 * 119.99911 * 359.97438 * 1 2 3 25 25 H 0.97006 * 119.99667 * 248.07524 * 12 9 7 26 26 H 1.08003 * 119.96872 * 359.97178 * 14 13 12 27 27 H 1.07994 * 119.81846 * 180.29301 * 15 14 13 28 28 H 1.07998 * 119.84902 * 179.74008 * 16 15 14 29 29 H 1.07998 * 120.03164 * 180.02562 * 17 16 15 30 30 H 1.07998 * 126.63056 * 359.96772 * 20 19 18 31 31 H 1.08004 * 126.48419 * 180.14297 * 21 20 19 32 32 H 1.08010 * 125.65743 * 179.72738 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 16 3.7665 -1.1941 -0.0001 10 8 4.1682 -0.6488 1.2490 11 8 4.1673 -0.6505 -1.2504 12 7 4.2566 -2.7759 0.0000 13 6 4.0266 -3.5776 -1.1181 14 6 2.8769 -3.4049 -1.8745 15 6 2.6535 -4.1960 -2.9853 16 6 3.5671 -5.1722 -3.3445 17 6 4.7131 -5.3609 -2.5996 18 6 4.9541 -4.5649 -1.4795 19 6 6.1789 -4.7624 -0.6777 20 6 6.6309 -5.9487 -0.1902 21 6 7.8248 -5.6727 0.5067 22 6 8.0353 -4.3451 0.4187 23 8 7.0389 -3.7981 -0.2977 24 1 -0.4850 0.8400 0.0004 25 1 4.7001 -3.1462 0.7793 26 1 2.1575 -2.6485 -1.5975 27 1 1.7592 -4.0549 -3.5741 28 1 3.3820 -5.7886 -4.2118 29 1 5.4231 -6.1234 -2.8839 30 1 6.1661 -6.9156 -0.3146 31 1 8.4501 -6.3895 1.0183 32 1 8.8668 -3.8094 0.8523 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192985958.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:06 Heat of formation + Delta-G solvation = -34.360308 kcal Electronic energy + Delta-G solvation = -21233.341262 eV Core-core repulsion = 17866.637435 eV Total energy + Delta-G solvation = -3366.703827 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.40554 -39.08093 -35.79048 -34.62811 -34.56149 -33.20021 -33.01287 -31.81123 -29.10509 -27.75485 -26.59091 -23.11991 -22.34882 -21.34468 -20.39862 -19.07485 -18.14656 -17.63718 -17.03846 -16.77090 -15.87386 -15.53199 -15.28773 -14.51681 -14.43962 -13.97357 -13.51959 -13.43911 -13.13257 -12.81977 -12.76400 -12.70480 -12.33702 -11.98332 -11.46847 -11.43778 -11.07607 -10.93818 -10.76506 -10.58775 -10.36269 -9.93413 -9.87286 -9.29267 -9.09828 -9.07683 -8.20146 -7.70135 -6.91493 -5.48412 1.15810 1.64502 1.85985 2.01528 2.68843 3.01033 3.11590 3.13134 3.20474 3.87203 4.04084 4.07245 4.47685 4.70676 5.03986 5.07805 5.13684 5.18163 5.29321 5.43798 5.62587 5.76376 5.81645 5.92029 6.01379 6.05538 6.23018 6.43904 6.50828 6.59368 6.72447 6.87322 7.15129 7.22879 7.35601 7.56527 8.04785 8.56581 10.19253 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.006485 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.629847 B = 4316.840083 C = 5308.708194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.156 3.844 3 Si 0.799 3.201 4 H -0.244 1.244 5 H -0.253 1.253 6 H -0.221 1.221 7 C -1.019 5.019 8 H 0.131 0.869 9 S 2.664 3.336 10 O -0.998 6.998 11 O -0.993 6.993 12 N -1.054 6.054 13 C 0.218 3.782 14 C -0.169 4.169 15 C -0.072 4.072 16 C -0.153 4.153 17 C -0.071 4.071 18 C -0.073 4.073 19 C 0.044 3.956 20 C -0.202 4.202 21 C -0.214 4.214 22 C -0.045 4.045 23 O -0.165 6.165 24 H 0.283 0.717 25 H 0.415 0.585 26 H 0.170 0.830 27 H 0.130 0.870 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.058 -11.262 -2.870 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.065 4.065 3 Si 0.619 3.381 4 H -0.167 1.167 5 H -0.176 1.176 6 H -0.143 1.143 7 C -1.153 5.153 8 H 0.149 0.851 9 S 2.766 3.234 10 O -0.989 6.989 11 O -0.983 6.983 12 N -0.796 5.796 13 C 0.119 3.881 14 C -0.190 4.190 15 C -0.091 4.091 16 C -0.172 4.172 17 C -0.090 4.090 18 C -0.078 4.078 19 C -0.006 4.006 20 C -0.221 4.221 21 C -0.233 4.233 22 C -0.113 4.113 23 O -0.061 6.061 24 H 0.094 0.906 25 H 0.249 0.751 26 H 0.187 0.813 27 H 0.148 0.852 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.167 0.833 31 H 0.165 0.835 32 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 9.379 -9.992 -3.003 14.029 hybrid contribution -0.048 0.074 0.599 0.605 sum 9.331 -9.918 -2.405 13.828 Atomic orbital electron populations 1.69966 1.06471 1.29320 1.38480 1.24383 0.94812 0.98720 0.88542 0.87882 0.83587 0.84532 0.82084 1.16716 1.17645 1.14341 1.30441 1.14842 1.02549 1.67456 0.85129 1.01965 0.77844 0.69947 0.73621 1.93493 1.85612 1.74748 1.45005 1.93457 1.84991 1.74899 1.44905 1.53695 1.73195 1.31341 1.21380 1.17454 0.92340 0.90738 0.87577 1.22055 0.96599 1.03243 0.97098 1.21122 0.98903 0.93812 0.95230 1.20947 0.95160 1.00234 1.00906 1.20871 0.97484 0.98119 0.92477 1.17544 0.90686 1.01968 0.97581 1.20453 0.92374 0.86360 1.01437 1.21765 0.98172 0.98271 1.03877 1.21711 0.99638 0.96060 1.05900 1.24147 0.93576 0.93921 0.99630 1.84231 1.29759 1.37142 1.54946 0.90632 0.75062 0.81319 0.85195 0.85666 0.85641 0.83339 0.83463 0.78170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.48 13.96 55.43 0.77 -21.71 16 2 C 0.16 4.33 5.47 -17.82 -0.10 4.23 16 3 Si 0.80 20.12 26.54 -169.99 -4.51 15.61 16 4 H -0.24 -5.99 7.11 56.52 0.40 -5.58 16 5 H -0.25 -5.82 7.11 56.52 0.40 -5.41 16 6 H -0.22 -5.74 5.60 56.52 0.32 -5.42 16 7 C -1.02 -27.29 8.17 30.60 0.25 -27.04 16 8 H 0.13 3.45 7.04 -52.49 -0.37 3.09 16 9 S 2.66 67.32 3.87 -107.50 -0.42 66.91 16 10 O -1.00 -26.96 16.02 -57.17 -0.92 -27.87 16 11 O -0.99 -26.80 16.30 -57.17 -0.93 -27.74 16 12 N -1.05 -22.01 5.34 32.59 0.17 -21.84 16 13 C 0.22 4.26 6.17 -83.47 -0.52 3.75 16 14 C -0.17 -3.27 9.01 -39.43 -0.36 -3.62 16 15 C -0.07 -1.11 10.03 -39.52 -0.40 -1.51 16 16 C -0.15 -2.03 10.03 -39.60 -0.40 -2.42 16 17 C -0.07 -0.98 9.70 -39.20 -0.38 -1.36 16 18 C -0.07 -1.24 5.81 -104.81 -0.61 -1.85 16 19 C 0.04 0.70 5.87 -36.52 -0.21 0.49 16 20 C -0.20 -2.67 10.75 -39.36 -0.42 -3.10 16 21 C -0.21 -2.52 10.89 -39.80 -0.43 -2.95 16 22 C -0.04 -0.56 12.08 29.48 0.36 -0.21 16 23 O -0.17 -2.75 10.34 4.53 0.05 -2.70 16 24 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.42 7.75 8.17 -34.47 -0.28 7.47 16 26 H 0.17 3.63 4.42 -52.48 -0.23 3.40 16 27 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 28 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 31 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 32 H 0.20 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 292.44 15.07 4.41 4.41 Total: -1.00 -32.57 292.44 -7.23 -39.80 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -2.64 Total: 10.72 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: -3.21 Total: -35.59 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.95 Total: -43.54 kcal Atomic # 8 Polarization: -56.51 SS G_CDS: -1.80 Total: -58.31 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.51 Total: 15.61 kcal Atomic # 16 Polarization: 67.32 SS G_CDS: -0.42 Total: 66.91 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.57 -7.23 -39.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985958.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.439 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds