Wall clock time and date at job start Tue Mar 31 2020 06:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00206 * 2 1 4 4 H 1.48502 * 109.47286 * 270.00078 * 3 2 1 5 5 H 1.48501 * 109.47128 * 30.00023 * 3 2 1 6 6 H 1.48498 * 109.47329 * 149.99902 * 3 2 1 7 7 C 1.37883 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00369 * 359.97438 * 7 2 1 9 9 S 1.76207 * 119.99530 * 179.97438 * 7 2 1 10 10 O 1.42094 * 106.40150 * 66.46019 * 9 7 2 11 11 O 1.42101 * 106.40183 * 293.53922 * 9 7 2 12 12 N 1.65601 * 107.21290 * 180.02562 * 9 7 2 13 13 C 1.39493 * 120.00597 * 67.79911 * 12 9 7 14 14 C 1.38698 * 120.14694 * 325.27499 * 13 12 9 15 15 C 1.38195 * 120.07056 * 179.71648 * 14 13 12 16 16 C 1.38438 * 120.36637 * 0.55748 * 15 14 13 17 17 C 1.37976 * 120.29725 * 359.71921 * 16 15 14 18 18 C 1.39515 * 119.92552 * 359.97438 * 17 16 15 19 19 C 1.47717 * 120.18155 * 179.97438 * 18 17 16 20 20 C 1.35986 * 125.93349 * 309.74657 * 19 18 17 21 21 C 1.40968 * 106.73708 * 179.85019 * 20 19 18 22 22 C 1.34704 * 107.03354 * 0.40599 * 21 20 19 23 23 O 1.34358 * 108.67813 * 359.74543 * 22 21 20 24 24 H 0.96998 * 119.99911 * 359.97438 * 1 2 3 25 25 H 0.97006 * 119.99667 * 248.07524 * 12 9 7 26 26 H 1.08003 * 119.96872 * 359.97178 * 14 13 12 27 27 H 1.07994 * 119.81846 * 180.29301 * 15 14 13 28 28 H 1.07998 * 119.84902 * 179.74008 * 16 15 14 29 29 H 1.07998 * 120.03164 * 180.02562 * 17 16 15 30 30 H 1.07998 * 126.63056 * 359.96772 * 20 19 18 31 31 H 1.08004 * 126.48419 * 180.14297 * 21 20 19 32 32 H 1.08010 * 125.65743 * 179.72738 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 16 3.7665 -1.1941 -0.0001 10 8 4.1682 -0.6488 1.2490 11 8 4.1673 -0.6505 -1.2504 12 7 4.2566 -2.7759 0.0000 13 6 4.0266 -3.5776 -1.1181 14 6 2.8769 -3.4049 -1.8745 15 6 2.6535 -4.1960 -2.9853 16 6 3.5671 -5.1722 -3.3445 17 6 4.7131 -5.3609 -2.5996 18 6 4.9541 -4.5649 -1.4795 19 6 6.1789 -4.7624 -0.6777 20 6 6.6309 -5.9487 -0.1902 21 6 7.8248 -5.6727 0.5067 22 6 8.0353 -4.3451 0.4187 23 8 7.0389 -3.7981 -0.2977 24 1 -0.4850 0.8400 0.0004 25 1 4.7001 -3.1462 0.7793 26 1 2.1575 -2.6485 -1.5975 27 1 1.7592 -4.0549 -3.5741 28 1 3.3820 -5.7886 -4.2118 29 1 5.4231 -6.1234 -2.8839 30 1 6.1661 -6.9156 -0.3146 31 1 8.4501 -6.3895 1.0183 32 1 8.8668 -3.8094 0.8523 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192985958.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:06 Heat of formation + Delta-G solvation = -58.198288 kcal Electronic energy + Delta-G solvation = -21234.374954 eV Core-core repulsion = 17866.637435 eV Total energy + Delta-G solvation = -3367.737519 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.44776 -40.35534 -37.85904 -36.68803 -36.04713 -35.28534 -34.08339 -32.93649 -30.40759 -28.89367 -28.65618 -24.31274 -23.62832 -22.40362 -21.54822 -20.91221 -19.85673 -19.13712 -18.70459 -18.27263 -17.37309 -16.89151 -16.60060 -16.27092 -15.86747 -15.53826 -15.26861 -15.12728 -14.60554 -14.35164 -13.77989 -13.72268 -13.68374 -13.49243 -13.35002 -13.01032 -12.89139 -12.71534 -12.61829 -12.38080 -11.99389 -11.65739 -11.35120 -11.14057 -10.88563 -10.23003 -9.41844 -9.01976 -8.93982 -7.59508 -0.17158 0.01582 0.45083 0.94606 1.00941 1.10138 1.16945 1.73094 1.84542 2.12951 2.25354 2.36629 2.82455 3.16376 3.66809 3.87766 3.95012 4.08483 4.14133 4.25989 4.27730 4.48694 4.61182 4.77768 4.94450 5.02015 5.11310 5.16180 5.30745 5.39112 5.45348 5.59576 5.66138 5.87176 5.94749 6.12714 6.21554 6.44765 8.14105 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.006485 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.629847 B = 4316.840083 C = 5308.708194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.117 3.883 3 Si 0.817 3.183 4 H -0.237 1.237 5 H -0.214 1.214 6 H -0.236 1.236 7 C -1.029 5.029 8 H 0.121 0.879 9 S 2.685 3.315 10 O -1.022 7.022 11 O -1.015 7.015 12 N -1.046 6.046 13 C 0.175 3.825 14 C -0.202 4.202 15 C -0.078 4.078 16 C -0.132 4.132 17 C -0.065 4.065 18 C -0.075 4.075 19 C 0.001 3.999 20 C -0.186 4.186 21 C -0.212 4.212 22 C -0.052 4.052 23 O -0.200 6.200 24 H 0.294 0.706 25 H 0.422 0.578 26 H 0.136 0.864 27 H 0.151 0.849 28 H 0.172 0.828 29 H 0.163 0.837 30 H 0.172 0.828 31 H 0.180 0.820 32 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.515 -13.362 -3.754 17.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.101 4.101 3 Si 0.634 3.366 4 H -0.160 1.160 5 H -0.136 1.136 6 H -0.159 1.159 7 C -1.162 5.162 8 H 0.139 0.861 9 S 2.787 3.213 10 O -1.012 7.012 11 O -1.005 7.005 12 N -0.793 5.793 13 C 0.078 3.922 14 C -0.223 4.223 15 C -0.097 4.097 16 C -0.151 4.151 17 C -0.083 4.083 18 C -0.079 4.079 19 C -0.048 4.048 20 C -0.205 4.205 21 C -0.231 4.231 22 C -0.119 4.119 23 O -0.097 6.097 24 H 0.105 0.895 25 H 0.258 0.742 26 H 0.154 0.846 27 H 0.169 0.831 28 H 0.190 0.810 29 H 0.181 0.819 30 H 0.189 0.811 31 H 0.198 0.802 32 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 10.808 -12.091 -3.889 16.678 hybrid contribution -0.423 0.525 0.832 1.071 sum 10.385 -11.566 -3.057 15.842 Atomic orbital electron populations 1.69971 1.07039 1.30670 1.39129 1.24999 0.95599 1.00865 0.88650 0.87610 0.82803 0.83448 0.82758 1.16048 1.13588 1.15923 1.30734 1.16173 1.02317 1.67020 0.86100 1.01079 0.76854 0.70751 0.72633 1.93448 1.85617 1.76347 1.45770 1.93411 1.84981 1.76412 1.45719 1.53072 1.73394 1.30142 1.22660 1.17741 0.93859 0.92654 0.87935 1.21967 0.96651 1.04267 0.99402 1.21442 1.00396 0.93687 0.94157 1.21459 0.93522 0.98797 1.01295 1.21376 0.98204 0.97866 0.90879 1.17853 0.90519 1.01189 0.98369 1.20582 0.93024 0.87323 1.03882 1.22136 0.98066 0.98180 1.02122 1.22123 0.99335 0.96283 1.05370 1.24977 0.93370 0.94937 0.98574 1.84199 1.30966 1.38438 1.56100 0.89495 0.74209 0.84599 0.83090 0.81041 0.81947 0.81096 0.80216 0.75100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.16 13.96 21.45 0.30 -46.86 16 2 C 0.12 6.65 5.47 84.66 0.46 7.12 16 3 Si 0.82 40.89 26.54 68.60 1.82 42.71 16 4 H -0.24 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.21 -9.34 7.11 99.48 0.71 -8.63 16 6 H -0.24 -12.41 5.60 99.48 0.56 -11.85 16 7 C -1.03 -57.53 8.17 67.74 0.55 -56.97 16 8 H 0.12 6.81 7.04 -2.91 -0.02 6.79 16 9 S 2.69 140.82 3.87 -56.49 -0.22 140.60 16 10 O -1.02 -56.84 16.02 -128.00 -2.05 -58.89 16 11 O -1.02 -56.75 16.30 -128.00 -2.09 -58.84 16 12 N -1.05 -45.46 5.34 -50.82 -0.27 -45.73 16 13 C 0.18 7.03 6.17 38.51 0.24 7.26 16 14 C -0.20 -8.05 9.01 22.37 0.20 -7.85 16 15 C -0.08 -2.34 10.03 22.31 0.22 -2.11 16 16 C -0.13 -3.03 10.03 22.26 0.22 -2.81 16 17 C -0.06 -1.60 9.70 22.52 0.22 -1.38 16 18 C -0.07 -2.46 5.81 -19.99 -0.12 -2.58 16 19 C 0.00 0.03 5.87 24.25 0.14 0.18 16 20 C -0.19 -4.41 10.75 22.42 0.24 -4.17 16 21 C -0.21 -4.33 10.89 22.13 0.24 -4.09 16 22 C -0.05 -1.20 12.08 67.01 0.81 -0.39 16 23 O -0.20 -6.55 10.34 -6.72 -0.07 -6.62 16 24 H 0.29 14.86 8.31 -92.71 -0.77 14.09 16 25 H 0.42 16.48 8.17 -96.74 -0.79 15.69 16 26 H 0.14 6.26 4.42 -2.91 -0.01 6.25 16 27 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 28 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 29 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 30 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.18 2.39 8.06 -2.91 -0.02 2.36 16 32 H 0.23 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -73.35 292.44 1.10 -72.25 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.24 Total: 29.17 kcal Atomic # 6 Polarization: -71.24 SS G_CDS: 3.44 Total: -67.80 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: 0.03 Total: -92.59 kcal Atomic # 8 Polarization: -120.14 SS G_CDS: -4.21 Total: -124.35 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 1.82 Total: 42.71 kcal Atomic # 16 Polarization: 140.82 SS G_CDS: -0.22 Total: 140.60 kcal Total: -73.35 1.10 -72.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985958.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.052 kcal (2) G-P(sol) polarization free energy of solvation -73.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds