Wall clock time and date at job start Tue Mar 31 2020 06:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36940 * 120.00578 * 2 1 4 4 H 1.07994 * 119.99849 * 202.47274 * 3 2 1 5 5 C 1.38992 * 119.99599 * 22.47303 * 3 2 1 6 6 N 1.31404 * 120.00286 * 11.56044 * 5 3 2 7 7 Si 1.86804 * 120.00087 * 191.55444 * 5 3 2 8 8 H 1.48500 * 109.46472 * 60.00359 * 7 5 3 9 9 H 1.48493 * 109.47094 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47031 * 300.00255 * 7 5 3 11 11 C 1.34777 * 119.99700 * 179.97438 * 2 1 3 12 12 O 1.21658 * 120.00093 * 179.97438 * 11 2 1 13 13 C 1.47187 * 120.00083 * 0.28215 * 11 2 1 14 14 C 1.40311 * 120.17389 * 269.72037 * 13 11 2 15 15 O 1.35764 * 120.11069 * 359.97438 * 14 13 11 16 16 C 1.38581 * 119.77305 * 180.02562 * 14 13 11 17 17 F 1.35097 * 119.93859 * 180.02562 * 16 14 13 18 18 C 1.38606 * 120.12342 * 359.97438 * 16 14 13 19 19 F 1.35104 * 119.82432 * 179.97438 * 18 16 14 20 20 C 1.38819 * 120.35558 * 0.02562 * 18 16 14 21 21 F 1.35103 * 119.88824 * 179.97438 * 20 18 16 22 22 C 1.38175 * 120.22468 * 359.72283 * 20 18 16 23 23 F 1.35098 * 120.06523 * 180.27353 * 22 20 18 24 24 H 1.08998 * 109.47253 * 272.21968 * 1 2 3 25 25 H 1.09003 * 109.46776 * 32.21488 * 1 2 3 26 26 H 1.08998 * 109.47243 * 152.21660 * 1 2 3 27 27 H 0.97003 * 120.00297 * 180.02562 * 6 5 3 28 28 H 0.96699 * 114.00295 * 90.00011 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1682 1.2212 -0.3575 5 6 1.5340 2.3439 0.4601 6 7 0.3895 2.2692 1.1014 7 14 2.3335 4.0066 0.1670 8 1 2.4807 4.2344 -1.2930 9 1 1.4829 5.0746 0.7508 10 1 3.6719 4.0323 0.8096 11 6 2.1388 -1.1672 0.0005 12 8 3.3553 -1.1673 0.0001 13 6 1.4028 -2.4419 -0.0052 14 6 1.0501 -3.0580 1.2051 15 8 1.3870 -2.4807 2.3868 16 6 0.3577 -4.2583 1.1900 17 9 0.0159 -4.8542 2.3533 18 6 0.0141 -4.8481 -0.0164 19 9 -0.6606 -6.0186 -0.0240 20 6 0.3604 -4.2431 -1.2168 21 9 0.0212 -4.8265 -2.3872 22 6 1.0463 -3.0436 -1.2188 23 9 1.3768 -2.4548 -2.3889 24 1 -0.3634 0.0398 1.0269 25 1 -0.3633 0.8695 -0.5479 26 1 -0.3633 -0.9092 -0.4790 27 1 -0.0404 3.0774 1.4222 28 1 0.7198 -1.8715 2.7313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195293124.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:49 Heat of formation + Delta-G solvation = -206.319613 kcal Electronic energy + Delta-G solvation = -23957.312638 eV Core-core repulsion = 19475.082180 eV Total energy + Delta-G solvation = -4482.230458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.046 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.99923 -49.55030 -48.94187 -48.45679 -39.98124 -37.95885 -36.51154 -34.91629 -31.95204 -30.51382 -29.61204 -26.60230 -25.29414 -23.65568 -23.32593 -20.23851 -19.20300 -18.83845 -18.01671 -17.53868 -17.11372 -17.00822 -16.60848 -16.24290 -15.93903 -15.84156 -15.33243 -14.97016 -14.93374 -14.69173 -14.50945 -14.30521 -14.09151 -13.68622 -13.12918 -12.63580 -12.21976 -11.95220 -11.63690 -11.53259 -11.29723 -11.05590 -11.00725 -10.54991 -10.47852 -9.26561 -9.09397 -8.84648 -8.74171 -7.96485 -6.55167 -4.10844 0.28374 0.35697 2.60156 2.85069 3.01183 3.15147 3.18633 3.30378 3.65640 3.71003 3.82578 3.99186 4.22148 4.25345 4.74115 4.81586 4.94717 5.15150 5.49705 5.52067 5.64799 6.01186 6.25009 6.60152 6.93216 7.36381 7.41208 7.83494 8.21029 8.90593 9.11008 9.63464 10.48208 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.024049 B = 0.005482 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.988922 B = 5106.524854 C = 5647.626816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.421 5.421 3 C -0.308 4.308 4 H 0.104 0.896 5 C 0.036 3.964 6 N -0.876 5.876 7 Si 0.933 3.067 8 H -0.271 1.271 9 H -0.282 1.282 10 H -0.270 1.270 11 C 0.480 3.520 12 O -0.562 6.562 13 C -0.098 4.098 14 C 0.156 3.844 15 O -0.460 6.460 16 C 0.060 3.940 17 F -0.108 7.108 18 C 0.076 3.924 19 F -0.107 7.107 20 C 0.050 3.950 21 F -0.108 7.108 22 C 0.128 3.872 23 F -0.100 7.100 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.022 0.978 27 H 0.272 0.728 28 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.840 -8.963 -0.675 10.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.137 5.137 3 C -0.435 4.435 4 H 0.122 0.878 5 C -0.169 4.169 6 N -0.515 5.515 7 Si 0.759 3.241 8 H -0.196 1.196 9 H -0.208 1.208 10 H -0.195 1.195 11 C 0.266 3.734 12 O -0.446 6.446 13 C -0.103 4.103 14 C 0.108 3.892 15 O -0.272 6.272 16 C 0.038 3.962 17 F -0.087 7.087 18 C 0.054 3.946 19 F -0.086 7.086 20 C 0.029 3.971 21 F -0.087 7.087 22 C 0.106 3.894 23 F -0.078 7.078 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -4.938 -9.156 -0.672 10.424 hybrid contribution -0.535 0.671 -0.200 0.882 sum -5.474 -8.484 -0.873 10.135 Atomic orbital electron populations 1.21615 0.80793 0.99242 1.02078 1.43528 1.05645 1.04302 1.60258 1.19685 0.99930 0.83112 1.40798 0.87830 1.25406 0.96342 1.00353 0.94752 1.69950 1.17048 1.30038 1.34428 0.85885 0.79145 0.80096 0.79022 1.19642 1.20751 1.19489 1.17069 0.87211 0.81938 0.87217 1.90707 1.12359 1.85646 1.55844 1.20685 0.99604 0.99793 0.90255 1.17707 0.94427 0.90566 0.86505 1.84835 1.47307 1.62648 1.32378 1.17451 1.03006 0.94801 0.80907 1.91568 1.90169 1.82506 1.44420 1.16918 1.00787 0.85642 0.91239 1.91582 1.76983 1.43016 1.96987 1.16946 1.05098 0.93668 0.81401 1.91582 1.90391 1.83071 1.43638 1.17116 0.98919 0.90814 0.82522 1.91627 1.89836 1.82608 1.43712 0.91868 0.90330 0.95923 0.91743 0.73342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.16 8.54 59.84 0.51 2.67 15 2 N -0.42 -10.06 3.01 -123.51 -0.37 -10.44 15 3 C -0.31 -8.04 9.28 -14.99 -0.14 -8.18 15 4 H 0.10 2.85 7.40 -52.49 -0.39 2.46 15 5 C 0.04 0.88 5.11 -17.46 -0.09 0.79 15 6 N -0.88 -21.22 10.61 55.50 0.59 -20.63 15 7 Si 0.93 19.46 29.57 -169.99 -5.03 14.43 15 8 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 9 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 10 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 11 C 0.48 11.32 6.23 -12.63 -0.08 11.24 15 12 O -0.56 -15.48 16.80 5.23 0.09 -15.39 15 13 C -0.10 -1.82 3.90 -104.80 -0.41 -2.23 15 14 C 0.16 2.53 6.72 -38.68 -0.26 2.27 15 15 O -0.46 -7.41 12.81 -19.00 -0.24 -7.66 15 16 C 0.06 0.85 7.30 -39.32 -0.29 0.56 15 17 F -0.11 -1.51 17.01 2.25 0.04 -1.47 15 18 C 0.08 1.05 7.31 -39.23 -0.29 0.76 15 19 F -0.11 -1.44 17.07 2.25 0.04 -1.40 15 20 C 0.05 0.74 7.30 -39.39 -0.29 0.45 15 21 F -0.11 -1.56 17.08 2.25 0.04 -1.52 15 22 C 0.13 2.17 6.84 -38.92 -0.27 1.90 15 23 F -0.10 -1.82 16.73 2.25 0.04 -1.78 15 24 H 0.06 1.26 7.53 -51.93 -0.39 0.87 15 25 H 0.08 1.69 7.07 -51.93 -0.37 1.33 15 26 H 0.02 0.39 6.44 -51.93 -0.33 0.05 15 27 H 0.27 6.27 8.31 -40.82 -0.34 5.94 15 28 H 0.41 4.94 9.06 45.56 0.41 5.36 15 LS Contribution 276.36 15.07 4.16 4.16 Total: -1.00 -28.88 276.36 -2.44 -31.32 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -0.20 Total: 0.13 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -1.59 Total: 10.24 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.22 Total: -31.07 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.16 Total: -23.05 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.15 Total: -6.18 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.88 -2.44 -31.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195293124.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.996 kcal (2) G-P(sol) polarization free energy of solvation -28.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds