Wall clock time and date at job start Tue Mar 31 2020 06:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36940 * 120.00578 * 2 1 4 4 H 1.07994 * 119.99849 * 202.47274 * 3 2 1 5 5 C 1.38992 * 119.99599 * 22.47303 * 3 2 1 6 6 N 1.31404 * 120.00286 * 11.56044 * 5 3 2 7 7 Si 1.86804 * 120.00087 * 191.55444 * 5 3 2 8 8 H 1.48500 * 109.46472 * 60.00359 * 7 5 3 9 9 H 1.48493 * 109.47094 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47031 * 300.00255 * 7 5 3 11 11 C 1.34777 * 119.99700 * 179.97438 * 2 1 3 12 12 O 1.21658 * 120.00093 * 179.97438 * 11 2 1 13 13 C 1.47187 * 120.00083 * 0.28215 * 11 2 1 14 14 C 1.40311 * 120.17389 * 269.72037 * 13 11 2 15 15 O 1.35764 * 120.11069 * 359.97438 * 14 13 11 16 16 C 1.38581 * 119.77305 * 180.02562 * 14 13 11 17 17 F 1.35097 * 119.93859 * 180.02562 * 16 14 13 18 18 C 1.38606 * 120.12342 * 359.97438 * 16 14 13 19 19 F 1.35104 * 119.82432 * 179.97438 * 18 16 14 20 20 C 1.38819 * 120.35558 * 0.02562 * 18 16 14 21 21 F 1.35103 * 119.88824 * 179.97438 * 20 18 16 22 22 C 1.38175 * 120.22468 * 359.72283 * 20 18 16 23 23 F 1.35098 * 120.06523 * 180.27353 * 22 20 18 24 24 H 1.08998 * 109.47253 * 272.21968 * 1 2 3 25 25 H 1.09003 * 109.46776 * 32.21488 * 1 2 3 26 26 H 1.08998 * 109.47243 * 152.21660 * 1 2 3 27 27 H 0.97003 * 120.00297 * 180.02562 * 6 5 3 28 28 H 0.96699 * 114.00295 * 90.00011 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1682 1.2212 -0.3575 5 6 1.5340 2.3439 0.4601 6 7 0.3895 2.2692 1.1014 7 14 2.3335 4.0066 0.1670 8 1 2.4807 4.2344 -1.2930 9 1 1.4829 5.0746 0.7508 10 1 3.6719 4.0323 0.8096 11 6 2.1388 -1.1672 0.0005 12 8 3.3553 -1.1673 0.0001 13 6 1.4028 -2.4419 -0.0052 14 6 1.0501 -3.0580 1.2051 15 8 1.3870 -2.4807 2.3868 16 6 0.3577 -4.2583 1.1900 17 9 0.0159 -4.8542 2.3533 18 6 0.0141 -4.8481 -0.0164 19 9 -0.6606 -6.0186 -0.0240 20 6 0.3604 -4.2431 -1.2168 21 9 0.0212 -4.8265 -2.3872 22 6 1.0463 -3.0436 -1.2188 23 9 1.3768 -2.4548 -2.3889 24 1 -0.3634 0.0398 1.0269 25 1 -0.3633 0.8695 -0.5479 26 1 -0.3633 -0.9092 -0.4790 27 1 -0.0404 3.0774 1.4222 28 1 0.7198 -1.8715 2.7313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195293124.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:48 Heat of formation + Delta-G solvation = -225.666548 kcal Electronic energy + Delta-G solvation = -23958.151584 eV Core-core repulsion = 19475.082180 eV Total energy + Delta-G solvation = -4483.069404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.046 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.19141 -50.79582 -50.18760 -49.66331 -41.45096 -39.61036 -37.79223 -36.80947 -33.81163 -31.93584 -30.88476 -28.37181 -26.96176 -25.17749 -24.58677 -21.82637 -20.47170 -20.10072 -19.45681 -18.98561 -18.77087 -18.24932 -17.94493 -17.72105 -17.26655 -17.09951 -16.75891 -16.59103 -16.16255 -16.05637 -15.91435 -15.69379 -15.62555 -15.16443 -14.78441 -14.00343 -13.74677 -13.55933 -13.38175 -13.19070 -12.77325 -12.64448 -12.41511 -12.32432 -12.13246 -11.10076 -10.83289 -10.22346 -10.07637 -9.84240 -8.42926 -6.07749 -0.99566 -0.88671 1.30403 1.33769 1.44099 1.52522 1.58978 1.66869 2.19563 2.37000 2.42766 2.57799 2.75142 2.90049 3.08588 3.30738 3.52753 3.82978 4.03777 4.20842 4.33432 4.44568 4.92705 5.01075 5.25206 5.39594 5.94574 6.29887 6.33873 7.01578 7.24378 7.78423 8.58570 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.024049 B = 0.005482 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.988922 B = 5106.524854 C = 5647.626816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.429 5.429 3 C -0.349 4.349 4 H 0.076 0.924 5 C 0.011 3.989 6 N -0.881 5.881 7 Si 0.989 3.011 8 H -0.269 1.269 9 H -0.267 1.267 10 H -0.276 1.276 11 C 0.476 3.524 12 O -0.616 6.616 13 C -0.119 4.119 14 C 0.167 3.833 15 O -0.474 6.474 16 C 0.078 3.922 17 F -0.100 7.100 18 C 0.102 3.898 19 F -0.097 7.097 20 C 0.067 3.933 21 F -0.102 7.102 22 C 0.125 3.875 23 F -0.112 7.112 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.279 0.721 28 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.421 -9.719 -0.318 12.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.145 5.145 3 C -0.476 4.476 4 H 0.093 0.907 5 C -0.193 4.193 6 N -0.518 5.518 7 Si 0.813 3.187 8 H -0.194 1.194 9 H -0.191 1.191 10 H -0.201 1.201 11 C 0.264 3.736 12 O -0.504 6.504 13 C -0.125 4.125 14 C 0.118 3.882 15 O -0.288 6.288 16 C 0.057 3.943 17 F -0.078 7.078 18 C 0.080 3.920 19 F -0.075 7.075 20 C 0.046 3.954 21 F -0.081 7.081 22 C 0.104 3.896 23 F -0.090 7.090 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -6.583 -9.914 -0.304 11.904 hybrid contribution -0.107 0.832 -0.266 0.880 sum -6.690 -9.081 -0.570 11.294 Atomic orbital electron populations 1.21600 0.78801 1.00074 1.02382 1.43720 1.06940 1.04059 1.59742 1.19612 0.99674 0.85034 1.43319 0.90651 1.26043 0.96775 1.02591 0.93883 1.69984 1.17173 1.31128 1.33522 0.85050 0.78155 0.76612 0.78925 1.19386 1.19077 1.20143 1.17598 0.86881 0.83299 0.85825 1.90652 1.14865 1.86917 1.57936 1.20193 1.01874 0.98399 0.92024 1.17591 0.94056 0.90907 0.85625 1.84795 1.48551 1.63216 1.32265 1.17111 1.02156 0.93821 0.81215 1.91602 1.89942 1.82184 1.44117 1.16716 0.99409 0.85276 0.90553 1.91626 1.76565 1.42414 1.96892 1.16644 1.04321 0.92654 0.81815 1.91608 1.90204 1.82770 1.43487 1.17076 0.99486 0.91545 0.81515 1.91596 1.90118 1.83009 1.44291 0.91499 0.91799 0.92889 0.91059 0.71494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.59 8.54 127.77 1.09 5.69 15 2 N -0.43 -20.95 3.01 -662.91 -2.00 -22.95 15 3 C -0.35 -18.79 9.28 84.08 0.78 -18.01 15 4 H 0.08 4.39 7.40 -2.91 -0.02 4.37 15 5 C 0.01 0.55 5.11 84.94 0.43 0.99 15 6 N -0.88 -42.07 10.61 21.67 0.23 -41.84 15 7 Si 0.99 39.75 29.57 68.60 2.03 41.78 15 8 H -0.27 -10.66 7.11 99.48 0.71 -9.95 15 9 H -0.27 -9.97 7.11 99.48 0.71 -9.26 15 10 H -0.28 -11.33 7.11 99.48 0.71 -10.62 15 11 C 0.48 23.03 6.23 86.59 0.54 23.57 15 12 O -0.62 -35.48 16.80 -4.21 -0.07 -35.55 15 13 C -0.12 -4.40 3.90 -19.98 -0.08 -4.48 15 14 C 0.17 5.13 6.72 22.86 0.15 5.28 15 15 O -0.47 -14.77 12.81 -90.91 -1.16 -15.94 15 16 C 0.08 2.00 7.30 22.44 0.16 2.17 15 17 F -0.10 -2.46 17.01 44.97 0.76 -1.69 15 18 C 0.10 2.49 7.31 22.50 0.16 2.65 15 19 F -0.10 -2.22 17.07 44.97 0.77 -1.45 15 20 C 0.07 1.80 7.30 22.39 0.16 1.96 15 21 F -0.10 -2.67 17.08 44.97 0.77 -1.90 15 22 C 0.13 4.11 6.84 22.70 0.16 4.27 15 23 F -0.11 -4.07 16.73 44.97 0.75 -3.32 15 24 H 0.07 2.61 7.53 -2.39 -0.02 2.59 15 25 H 0.06 2.74 7.07 -2.39 -0.02 2.72 15 26 H 0.05 1.78 6.44 -2.39 -0.02 1.76 15 27 H 0.28 12.48 8.31 -92.71 -0.77 11.71 15 28 H 0.42 9.77 9.06 -74.06 -0.67 9.10 15 Total: -1.00 -62.61 276.36 6.25 -56.35 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: 0.61 Total: 2.42 kcal Atomic # 6 Polarization: 20.53 SS G_CDS: 3.57 Total: 24.10 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -1.77 Total: -64.79 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -1.24 Total: -51.49 kcal Atomic # 9 Polarization: -11.42 SS G_CDS: 3.05 Total: -8.37 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -62.61 6.25 -56.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195293124.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.313 kcal (2) G-P(sol) polarization free energy of solvation -62.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds